Wall clock time and date at job start Sat Apr 11 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00111 * 2 1 4 4 O 1.21280 * 120.00423 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.47156 * 179.97438 * 5 3 2 7 7 C 1.76193 * 100.00049 * 180.02562 * 6 5 3 8 8 H 1.08005 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00056 * 180.02562 * 7 6 5 10 10 N 1.31623 * 119.99640 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47282 * 59.99711 * 11 9 7 13 13 H 1.48497 * 109.47200 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47280 * 300.00084 * 11 9 7 15 15 C 1.46497 * 120.00322 * 180.02562 * 2 1 3 16 16 H 1.09002 * 110.29060 * 180.69638 * 15 2 1 17 17 C 1.54263 * 110.32328 * 302.82432 * 15 2 1 18 18 C 1.54378 * 105.05902 * 118.89397 * 17 15 2 19 19 N 1.48558 * 104.59852 * 23.85366 * 18 17 15 20 20 C 1.38990 * 111.00674 * 200.95780 * 19 18 17 21 21 C 1.39068 * 119.68811 * 299.85448 * 20 19 18 22 22 C 1.38384 * 119.15299 * 179.78696 * 21 20 19 23 23 C 1.38754 * 118.53564 * 0.47721 * 22 21 20 24 24 C 1.38362 * 119.30725 * 359.74716 * 23 22 21 25 25 F 1.35100 * 119.60768 * 180.02562 * 24 23 22 26 26 N 1.32142 * 120.79066 * 0.02562 * 24 23 22 27 27 C 1.48725 * 104.28781 * 320.57654 * 19 18 17 28 28 H 1.08995 * 109.47620 * 89.99771 * 1 2 3 29 29 H 1.09006 * 109.47028 * 209.99878 * 1 2 3 30 30 H 1.09002 * 109.47109 * 329.99455 * 1 2 3 31 31 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 32 32 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 33 33 H 0.97010 * 119.99946 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.32767 * 237.78988 * 17 15 2 35 35 H 1.09000 * 110.32241 * 359.90463 * 17 15 2 36 36 H 1.09000 * 110.41190 * 142.63740 * 18 17 15 37 37 H 1.09010 * 110.41560 * 265.07606 * 18 17 15 38 38 H 1.08002 * 120.42628 * 0.02562 * 21 20 19 39 39 H 1.08007 * 120.73030 * 180.22254 * 22 21 20 40 40 H 1.08008 * 120.34433 * 179.76913 * 23 22 21 41 41 H 1.09003 * 110.38612 * 280.64076 * 27 19 18 42 42 H 1.08999 * 110.50934 * 158.14053 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0026 8 1 0.3761 5.0305 0.0024 9 6 1.9281 6.5081 0.0028 10 7 3.2264 6.7247 0.0026 11 14 0.7407 7.9501 0.0036 12 1 -0.1141 7.8868 1.2162 13 1 1.5067 9.2222 0.0031 14 1 -0.1148 7.8875 -1.2087 15 6 2.1975 -1.2687 -0.0006 16 1 3.2718 -1.0848 0.0119 17 6 1.7863 -2.1253 1.2147 18 6 1.1848 -3.4132 0.6124 19 7 1.7901 -3.5120 -0.7406 20 6 1.0246 -4.3223 -1.5709 21 6 0.8071 -5.6518 -1.2258 22 6 0.0396 -6.4475 -2.0583 23 6 -0.4784 -5.8878 -3.2175 24 6 -0.2189 -4.5590 -3.5026 25 9 -0.7207 -4.0078 -4.6293 26 7 0.5139 -3.8226 -2.6860 27 6 1.8119 -2.1099 -1.2362 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 0.7583 2.5303 -0.8892 32 1 0.7589 2.5299 0.8908 33 1 3.5667 7.6331 0.0031 34 1 2.6590 -2.3634 1.8227 35 1 1.0407 -1.6011 1.8125 36 1 1.4587 -4.2788 1.2156 37 1 0.1005 -3.3281 0.5385 38 1 1.2285 -6.0572 -0.3178 39 1 -0.1485 -7.4824 -1.8131 40 1 -1.0782 -6.4832 -3.8900 41 1 0.8261 -1.8206 -1.6005 42 1 2.5578 -1.9944 -2.0226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102669669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:34 Heat of formation + Delta-G solvation = -34.793933 kcal Electronic energy + Delta-G solvation = -26343.286116 eV Core-core repulsion = 22364.160118 eV Total energy + Delta-G solvation = -3979.125998 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.07382 -41.98923 -40.92438 -39.16182 -36.40031 -34.59435 -33.84363 -33.09866 -31.00081 -30.17637 -29.17741 -27.76540 -27.56835 -24.75604 -24.50959 -22.45606 -22.26650 -20.38442 -19.64611 -19.13183 -18.36087 -18.33944 -17.30003 -17.23304 -17.06906 -16.88799 -16.83033 -16.47890 -16.33305 -15.61629 -15.39455 -14.94814 -14.61122 -14.52771 -14.43993 -14.14561 -14.04148 -13.68440 -13.49519 -13.34292 -13.25944 -13.16580 -13.06717 -12.88014 -12.70823 -12.69724 -12.51457 -11.87730 -11.74026 -11.15409 -11.13673 -10.93929 -10.80495 -10.72225 -10.28930 -9.78426 -9.30616 -8.68901 -8.35226 -6.13957 -0.11206 0.14482 1.22525 1.43224 1.43410 1.50706 1.54101 1.95556 2.25906 2.27830 2.51254 2.86218 2.98702 3.22183 3.37940 3.48005 3.65381 3.77910 3.92100 4.00945 4.06686 4.11847 4.18923 4.19729 4.26365 4.28984 4.43497 4.54571 4.61457 4.66740 4.71147 4.77950 4.82079 4.88136 4.98098 5.08595 5.11185 5.20715 5.40449 5.42052 5.57693 5.96146 6.17578 6.19641 6.62965 7.05568 7.07898 8.73804 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020744 B = 0.002222 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.441706 B =12596.676112 C =13352.466978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.603 5.603 3 C 0.534 3.466 4 O -0.563 6.563 5 C -0.123 4.123 6 S -0.152 6.152 7 C -0.546 4.546 8 H 0.083 0.917 9 C 0.013 3.987 10 N -0.911 5.911 11 Si 0.999 3.001 12 H -0.260 1.260 13 H -0.279 1.279 14 H -0.263 1.263 15 C 0.130 3.870 16 H 0.085 0.915 17 C -0.128 4.128 18 C 0.049 3.951 19 N -0.458 5.458 20 C 0.317 3.683 21 C -0.182 4.182 22 C -0.016 4.016 23 C -0.210 4.210 24 C 0.297 3.703 25 F -0.129 7.129 26 N -0.586 5.586 27 C 0.048 3.952 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.271 0.729 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.066 0.934 38 H 0.173 0.827 39 H 0.192 0.808 40 H 0.172 0.828 41 H 0.071 0.929 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.021 -31.984 0.843 34.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.336 5.336 3 C 0.322 3.678 4 O -0.441 6.441 5 C -0.274 4.274 6 S 0.075 5.925 7 C -0.694 4.694 8 H 0.101 0.899 9 C -0.192 4.192 10 N -0.547 5.547 11 Si 0.821 3.179 12 H -0.185 1.185 13 H -0.204 1.204 14 H -0.188 1.188 15 C 0.026 3.974 16 H 0.104 0.896 17 C -0.167 4.167 18 C -0.076 4.076 19 N -0.176 5.176 20 C 0.085 3.915 21 C -0.205 4.205 22 C -0.042 4.042 23 C -0.232 4.232 24 C 0.144 3.856 25 F -0.108 7.108 26 N -0.307 5.307 27 C -0.081 4.081 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.144 0.856 37 H 0.085 0.915 38 H 0.191 0.809 39 H 0.209 0.791 40 H 0.189 0.811 41 H 0.089 0.911 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.425 -31.202 0.644 32.903 hybrid contribution -2.260 1.115 -0.717 2.620 sum -12.684 -30.086 -0.073 32.651 Atomic orbital electron populations 1.22015 0.77381 1.04947 1.02786 1.47835 1.08093 1.04267 1.73446 1.20176 0.87299 0.85416 0.74951 1.90677 1.15644 1.87372 1.50386 1.23373 1.02724 0.94851 1.06416 1.85594 1.12624 0.97274 1.97036 1.23152 0.94595 0.92591 1.59024 0.89894 1.26149 0.97633 1.01719 0.93720 1.70181 1.14138 1.22541 1.47889 0.84995 0.77585 0.75839 0.79524 1.18453 1.20379 1.18775 1.21821 0.97625 0.82551 0.95411 0.89628 1.22741 1.03067 0.94413 0.96440 1.23371 0.97836 1.00076 0.86276 1.62620 1.42264 1.08904 1.03801 1.19927 0.89222 0.93016 0.89319 1.21985 1.02575 0.91645 1.04257 1.21877 0.90511 1.01777 0.90012 1.22069 1.06233 0.92940 1.01946 1.18309 0.93913 0.89821 0.83522 1.91599 1.84435 1.87095 1.47676 1.66672 1.14399 1.41715 1.07883 1.23137 1.02183 0.86131 0.96607 0.92272 0.88444 0.89671 0.87800 0.86967 0.91978 0.88774 0.88546 0.85639 0.91537 0.80927 0.79066 0.81072 0.91079 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 8.93 127.77 1.14 2.51 16 2 N -0.60 -16.75 2.80 -817.60 -2.29 -19.04 16 3 C 0.53 20.76 7.69 87.66 0.67 21.44 16 4 O -0.56 -27.07 15.22 -3.03 -0.05 -27.12 16 5 C -0.12 -5.02 4.71 71.24 0.34 -4.69 16 6 S -0.15 -8.64 20.57 -56.49 -1.16 -9.81 16 7 C -0.55 -31.52 9.50 67.96 0.65 -30.87 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 C 0.01 0.72 5.49 84.86 0.47 1.19 16 10 N -0.91 -56.63 13.22 21.65 0.29 -56.34 16 11 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 12 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 13 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 14 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 15 C 0.13 3.24 3.46 45.89 0.16 3.39 16 16 H 0.09 2.68 6.96 -2.39 -0.02 2.66 16 17 C -0.13 -2.01 6.16 31.49 0.19 -1.81 16 18 C 0.05 0.57 5.90 86.45 0.51 1.08 16 19 N -0.46 -8.47 5.41 -687.51 -3.72 -12.18 16 20 C 0.32 5.73 6.23 133.04 0.83 6.56 16 21 C -0.18 -1.81 9.40 22.50 0.21 -1.59 16 22 C -0.02 -0.10 10.16 22.43 0.23 0.12 16 23 C -0.21 -2.31 10.08 22.42 0.23 -2.08 16 24 C 0.30 5.95 8.40 84.68 0.71 6.66 16 25 F -0.13 -2.95 17.29 44.97 0.78 -2.18 16 26 N -0.59 -13.64 8.50 -194.35 -1.65 -15.29 16 27 C 0.05 1.16 5.49 86.42 0.47 1.63 16 28 H 0.06 1.16 7.90 -2.39 -0.02 1.14 16 29 H 0.10 1.31 6.74 -2.38 -0.02 1.29 16 30 H 0.08 1.59 6.44 -2.39 -0.02 1.57 16 31 H 0.10 3.94 8.11 -2.39 -0.02 3.92 16 32 H 0.11 4.07 7.40 -2.40 -0.02 4.05 16 33 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.10 1.33 6.88 -2.39 -0.02 1.32 16 36 H 0.13 0.74 8.01 -2.39 -0.02 0.72 16 37 H 0.07 0.68 7.97 -2.38 -0.02 0.66 16 38 H 0.17 0.71 7.88 -2.91 -0.02 0.69 16 39 H 0.19 -0.43 8.06 -2.91 -0.02 -0.45 16 40 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 41 H 0.07 1.81 6.05 -2.39 -0.01 1.79 16 42 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -83.29 364.32 2.08 -81.21 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.05 Total: 11.23 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 6.80 Total: 3.54 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -7.37 Total: -102.86 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.05 Total: -27.12 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.81 kcal Total: -83.29 2.08 -81.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102669669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.419 kcal (2) G-P(sol) polarization free energy of solvation -83.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds