Wall clock time and date at job start Sat Apr 11 2020 05:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 120.00440 * 2 1 4 4 O 1.21277 * 120.00043 * 179.97438 * 3 2 1 5 5 C 1.50708 * 119.99680 * 359.97438 * 3 2 1 6 6 S 1.80992 * 109.46979 * 180.02562 * 5 3 2 7 7 C 1.76201 * 100.00224 * 179.97438 * 6 5 3 8 8 H 1.08004 * 119.99477 * 0.02562 * 7 6 5 9 9 C 1.38799 * 120.00095 * 179.97438 * 7 6 5 10 10 N 1.31622 * 120.00125 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99544 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47348 * 60.00118 * 11 9 7 13 13 H 1.48502 * 109.46689 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47308 * 299.99856 * 11 9 7 15 15 C 1.46503 * 119.99713 * 179.97438 * 2 1 3 16 16 C 1.53782 * 113.60969 * 60.00568 * 15 2 1 17 17 C 1.53784 * 87.08248 * 219.93060 * 16 15 2 18 18 N 1.46492 * 113.61568 * 139.98259 * 17 16 15 19 19 C 1.38996 * 120.00451 * 156.53445 * 18 17 16 20 20 C 1.39069 * 119.68504 * 359.97438 * 19 18 17 21 21 C 1.38380 * 119.15738 * 180.02562 * 20 19 18 22 22 C 1.38757 * 118.53396 * 0.25426 * 21 20 19 23 23 C 1.38374 * 119.30150 * 359.49627 * 22 21 20 24 24 F 1.35104 * 119.59974 * 180.25365 * 23 22 21 25 25 N 1.32135 * 120.79629 * 0.51781 * 23 22 21 26 26 C 1.53784 * 87.16872 * 25.38946 * 17 16 15 27 27 H 1.09000 * 109.47214 * 270.00556 * 1 2 3 28 28 H 1.09005 * 109.46611 * 30.00413 * 1 2 3 29 29 H 1.08996 * 109.47265 * 150.00236 * 1 2 3 30 30 H 1.08999 * 109.47158 * 300.00439 * 5 3 2 31 31 H 1.09001 * 109.46943 * 60.00513 * 5 3 2 32 32 H 0.97000 * 120.00351 * 179.97438 * 10 9 7 33 33 H 1.08996 * 112.84742 * 191.19838 * 15 2 1 34 34 H 1.09007 * 113.61235 * 105.38623 * 16 15 2 35 35 H 1.08996 * 113.69763 * 334.49117 * 16 15 2 36 36 H 1.09002 * 113.61358 * 270.80326 * 17 16 15 37 37 H 0.97003 * 120.00140 * 336.53119 * 18 17 16 38 38 H 1.08000 * 120.42646 * 0.04480 * 20 19 18 39 39 H 1.08002 * 120.73050 * 179.97438 * 21 20 19 40 40 H 1.07994 * 120.34994 * 179.75200 * 22 21 20 41 41 H 1.09005 * 113.61322 * 89.15924 * 26 17 16 42 42 H 1.08996 * 113.61663 * 220.05709 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1670 0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5617 3.8479 -0.0012 7 6 1.4417 5.2082 -0.0026 8 1 0.3764 5.0305 -0.0024 9 6 1.9285 6.5080 -0.0028 10 7 3.2268 6.7245 -0.0026 11 14 0.7410 7.9500 -0.0036 12 1 -0.1144 7.8875 1.2087 13 1 1.5072 9.2221 -0.0044 14 1 -0.1137 7.8868 -1.2163 15 6 2.1975 -1.2688 0.0006 16 6 1.8953 -2.1549 -1.2194 17 6 1.9150 -3.3530 -0.2554 18 7 0.8747 -4.3464 -0.5326 19 6 1.0389 -5.6608 -0.1114 20 6 2.1936 -6.0258 0.5723 21 6 2.3459 -7.3374 0.9862 22 6 1.3371 -8.2451 0.6969 23 6 0.2118 -7.8131 0.0173 24 9 -0.7764 -8.6907 -0.2630 25 7 0.0945 -6.5539 -0.3653 26 6 1.5404 -2.3636 0.8607 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 0.7591 2.5298 -0.8908 31 1 0.7586 2.5303 0.8892 32 1 3.5671 7.6329 -0.0031 33 1 3.2624 -1.1426 0.1956 34 1 2.6992 -2.1735 -1.9554 35 1 0.9180 -1.9689 -1.6647 36 1 2.9026 -3.7975 -0.1315 37 1 0.0712 -4.0870 -1.0102 38 1 2.9616 -5.2948 0.7779 39 1 3.2325 -7.6487 1.5186 40 1 1.4274 -9.2770 1.0026 41 1 0.4655 -2.2337 0.9863 42 1 2.0580 -2.5503 1.8016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001126887987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:50 Heat of formation + Delta-G solvation = -4.231513 kcal Electronic energy + Delta-G solvation = -25437.326161 eV Core-core repulsion = 21459.525449 eV Total energy + Delta-G solvation = -3977.800712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.33598 -40.90076 -40.08062 -38.37487 -35.40514 -33.86388 -32.80850 -32.45597 -29.78756 -29.04484 -27.10637 -26.10351 -25.55717 -24.83667 -23.86036 -22.67142 -20.27144 -19.32998 -18.48079 -17.97586 -17.69376 -17.01727 -16.57518 -16.41108 -16.21356 -15.96012 -15.65158 -15.14355 -14.83162 -14.73605 -14.25814 -14.05604 -13.78333 -13.54618 -13.44398 -13.10132 -12.96737 -12.72878 -12.68872 -12.51603 -12.33384 -12.05030 -11.63475 -11.31271 -11.18680 -11.06971 -11.05975 -10.78199 -10.63913 -10.12637 -10.04663 -9.84261 -9.42914 -9.08470 -8.60781 -8.26829 -8.19972 -6.53481 -6.24103 -3.95162 0.66601 0.89206 2.38559 2.89733 2.94848 3.21475 3.23516 3.27110 3.28766 3.51163 3.57372 4.05625 4.17671 4.18449 4.21591 4.41478 4.48284 4.53181 4.72081 4.79134 4.86840 5.00270 5.10993 5.21230 5.29149 5.30388 5.30923 5.35570 5.41140 5.52280 5.53354 5.62779 5.67333 5.76378 5.84785 5.90321 6.08840 6.12730 6.48690 6.56179 7.00339 7.44816 7.51371 7.56664 8.32254 8.47376 9.21084 10.83240 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.039598 B = 0.001694 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.932893 B =16524.503682 C =16993.251898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.535 3.465 4 O -0.515 6.515 5 C -0.151 4.151 6 S -0.061 6.061 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.918 3.082 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.130 3.870 16 C -0.157 4.157 17 C 0.132 3.868 18 N -0.704 5.704 19 C 0.441 3.559 20 C -0.250 4.250 21 C -0.006 4.006 22 C -0.258 4.258 23 C 0.355 3.645 24 F -0.114 7.114 25 N -0.580 5.580 26 C -0.165 4.165 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.269 0.731 33 H 0.125 0.875 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.407 0.593 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.093 0.907 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.830 -28.284 1.170 28.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.347 5.347 3 C 0.323 3.677 4 O -0.389 6.389 5 C -0.301 4.301 6 S 0.165 5.835 7 C -0.685 4.685 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.199 1.199 15 C 0.024 3.976 16 C -0.197 4.197 17 C 0.025 3.975 18 N -0.335 5.335 19 C 0.205 3.795 20 C -0.275 4.275 21 C -0.032 4.032 22 C -0.283 4.283 23 C 0.201 3.799 24 F -0.093 7.093 25 N -0.304 5.304 26 C -0.205 4.205 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.133 0.867 37 H 0.244 0.756 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.111 0.889 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.501 -27.778 0.762 28.008 hybrid contribution -2.240 0.576 0.145 2.318 sum -5.741 -27.201 0.906 27.815 Atomic orbital electron populations 1.21742 0.79786 1.03086 1.01857 1.47751 1.06581 1.05106 1.75297 1.20387 0.87951 0.84566 0.74781 1.90688 1.13745 1.86780 1.47670 1.23569 1.04599 0.97206 1.04753 1.85387 1.08016 0.93332 1.96719 1.22815 0.94262 0.92210 1.59177 0.90991 1.24985 0.95676 0.98365 0.94493 1.70000 1.11746 1.21799 1.46691 0.86229 0.80192 0.80307 0.78803 1.19933 1.20786 1.19941 1.22243 0.98506 0.81705 0.95098 1.23856 1.03729 0.93983 0.98137 1.22423 0.91872 0.86326 0.96832 1.44617 1.23012 1.04480 1.61359 1.17864 0.88031 0.85096 0.88540 1.21509 0.99745 0.98405 1.07822 1.21215 0.97242 0.91592 0.93120 1.21489 0.95563 1.02644 1.08574 1.17661 0.84695 0.84339 0.93184 1.91628 1.60851 1.65421 1.91431 1.66224 1.33202 1.02141 1.28821 1.24062 1.02612 0.95075 0.98721 0.92599 0.90420 0.91472 0.89218 0.89226 0.92104 0.85728 0.89763 0.88996 0.86669 0.75612 0.84042 0.83779 0.83928 0.88855 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 8.86 59.85 0.53 1.27 16 2 N -0.61 -7.77 3.08 -172.89 -0.53 -8.30 16 3 C 0.53 9.63 7.69 -10.98 -0.08 9.54 16 4 O -0.51 -11.18 15.34 5.56 0.09 -11.10 16 5 C -0.15 -2.96 4.71 36.01 0.17 -2.79 16 6 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 7 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 8 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 9 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 10 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 11 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 15 C 0.13 1.31 4.20 -67.03 -0.28 1.03 16 16 C -0.16 -1.21 7.36 -25.92 -0.19 -1.40 16 17 C 0.13 0.84 3.98 -67.12 -0.27 0.57 16 18 N -0.70 -5.09 5.53 -53.15 -0.29 -5.38 16 19 C 0.44 3.86 7.65 -155.02 -1.19 2.68 16 20 C -0.25 -1.71 9.28 -39.22 -0.36 -2.08 16 21 C -0.01 -0.04 10.16 -39.34 -0.40 -0.44 16 22 C -0.26 -1.81 10.08 -39.34 -0.40 -2.21 16 23 C 0.36 3.44 8.41 -17.37 -0.15 3.30 16 24 F -0.11 -1.16 17.29 2.25 0.04 -1.12 16 25 N -0.58 -6.17 10.40 -12.78 -0.13 -6.31 16 26 C -0.16 -1.22 7.32 -25.83 -0.19 -1.41 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.76 6.44 -51.93 -0.33 0.42 16 29 H 0.07 0.47 6.35 -51.93 -0.33 0.14 16 30 H 0.09 1.63 7.40 -51.92 -0.38 1.24 16 31 H 0.09 1.64 8.11 -51.92 -0.42 1.22 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.12 1.46 7.23 -51.93 -0.38 1.08 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.67 6.89 -51.93 -0.36 0.31 16 36 H 0.12 0.61 6.17 -51.93 -0.32 0.29 16 37 H 0.41 2.83 8.83 -40.82 -0.36 2.47 16 38 H 0.14 0.71 6.06 -52.49 -0.32 0.39 16 39 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 41 H 0.09 0.69 6.75 -51.93 -0.35 0.34 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -34.86 367.90 -9.61 -44.48 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.21 Total: -0.26 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.61 Total: -4.71 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.23 Total: -45.12 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.86 -9.61 -44.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126887987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.244 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds