Wall clock time and date at job start Sat Apr 11 2020 05:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 120.00440 * 2 1 4 4 O 1.21277 * 120.00043 * 179.97438 * 3 2 1 5 5 C 1.50708 * 119.99680 * 359.97438 * 3 2 1 6 6 S 1.80992 * 109.46979 * 180.02562 * 5 3 2 7 7 C 1.76201 * 100.00224 * 179.97438 * 6 5 3 8 8 H 1.08004 * 119.99477 * 0.02562 * 7 6 5 9 9 C 1.38799 * 120.00095 * 179.97438 * 7 6 5 10 10 N 1.31622 * 120.00125 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99544 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47348 * 60.00118 * 11 9 7 13 13 H 1.48502 * 109.46689 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47308 * 299.99856 * 11 9 7 15 15 C 1.46503 * 119.99713 * 179.97438 * 2 1 3 16 16 C 1.53782 * 113.60969 * 60.00568 * 15 2 1 17 17 C 1.53784 * 87.08248 * 219.93060 * 16 15 2 18 18 N 1.46492 * 113.61568 * 139.98259 * 17 16 15 19 19 C 1.38996 * 120.00451 * 156.53445 * 18 17 16 20 20 C 1.39069 * 119.68504 * 359.97438 * 19 18 17 21 21 C 1.38380 * 119.15738 * 180.02562 * 20 19 18 22 22 C 1.38757 * 118.53396 * 0.25426 * 21 20 19 23 23 C 1.38374 * 119.30150 * 359.49627 * 22 21 20 24 24 F 1.35104 * 119.59974 * 180.25365 * 23 22 21 25 25 N 1.32135 * 120.79629 * 0.51781 * 23 22 21 26 26 C 1.53784 * 87.16872 * 25.38946 * 17 16 15 27 27 H 1.09000 * 109.47214 * 270.00556 * 1 2 3 28 28 H 1.09005 * 109.46611 * 30.00413 * 1 2 3 29 29 H 1.08996 * 109.47265 * 150.00236 * 1 2 3 30 30 H 1.08999 * 109.47158 * 300.00439 * 5 3 2 31 31 H 1.09001 * 109.46943 * 60.00513 * 5 3 2 32 32 H 0.97000 * 120.00351 * 179.97438 * 10 9 7 33 33 H 1.08996 * 112.84742 * 191.19838 * 15 2 1 34 34 H 1.09007 * 113.61235 * 105.38623 * 16 15 2 35 35 H 1.08996 * 113.69763 * 334.49117 * 16 15 2 36 36 H 1.09002 * 113.61358 * 270.80326 * 17 16 15 37 37 H 0.97003 * 120.00140 * 336.53119 * 18 17 16 38 38 H 1.08000 * 120.42646 * 0.04480 * 20 19 18 39 39 H 1.08002 * 120.73050 * 179.97438 * 21 20 19 40 40 H 1.07994 * 120.34994 * 179.75200 * 22 21 20 41 41 H 1.09005 * 113.61322 * 89.15924 * 26 17 16 42 42 H 1.08996 * 113.61663 * 220.05709 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1670 0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5617 3.8479 -0.0012 7 6 1.4417 5.2082 -0.0026 8 1 0.3764 5.0305 -0.0024 9 6 1.9285 6.5080 -0.0028 10 7 3.2268 6.7245 -0.0026 11 14 0.7410 7.9500 -0.0036 12 1 -0.1144 7.8875 1.2087 13 1 1.5072 9.2221 -0.0044 14 1 -0.1137 7.8868 -1.2163 15 6 2.1975 -1.2688 0.0006 16 6 1.8953 -2.1549 -1.2194 17 6 1.9150 -3.3530 -0.2554 18 7 0.8747 -4.3464 -0.5326 19 6 1.0389 -5.6608 -0.1114 20 6 2.1936 -6.0258 0.5723 21 6 2.3459 -7.3374 0.9862 22 6 1.3371 -8.2451 0.6969 23 6 0.2118 -7.8131 0.0173 24 9 -0.7764 -8.6907 -0.2630 25 7 0.0945 -6.5539 -0.3653 26 6 1.5404 -2.3636 0.8607 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 0.7591 2.5298 -0.8908 31 1 0.7586 2.5303 0.8892 32 1 3.5671 7.6329 -0.0031 33 1 3.2624 -1.1426 0.1956 34 1 2.6992 -2.1735 -1.9554 35 1 0.9180 -1.9689 -1.6647 36 1 2.9026 -3.7975 -0.1315 37 1 0.0712 -4.0870 -1.0102 38 1 2.9616 -5.2948 0.7779 39 1 3.2325 -7.6487 1.5186 40 1 1.4274 -9.2770 1.0026 41 1 0.4655 -2.2337 0.9863 42 1 2.0580 -2.5503 1.8016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001126887987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:49 Heat of formation + Delta-G solvation = -27.116369 kcal Electronic energy + Delta-G solvation = -25438.318522 eV Core-core repulsion = 21459.525449 eV Total energy + Delta-G solvation = -3978.793074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.01176 -41.62881 -40.91094 -39.42341 -36.30957 -34.67411 -34.58218 -33.39798 -30.88479 -29.97968 -27.97994 -27.68039 -26.73021 -25.58607 -24.43413 -23.40079 -21.19212 -20.24888 -19.61884 -19.12460 -18.60122 -18.15750 -17.27867 -17.11417 -17.06118 -16.87717 -16.81322 -16.54852 -16.16146 -15.80041 -15.40899 -14.91752 -14.56989 -14.51707 -14.46243 -14.19979 -14.04461 -13.72158 -13.40068 -13.33379 -13.21120 -13.13301 -13.11275 -12.87055 -12.66039 -12.35943 -11.96641 -11.90597 -11.69675 -11.18294 -11.12897 -10.86938 -10.72273 -10.63251 -10.27001 -9.63796 -8.75811 -8.66885 -8.34416 -6.12651 0.08888 0.37729 1.25707 1.43681 1.45606 1.54992 1.56253 1.82832 2.19006 2.28106 2.71975 2.95266 2.99601 3.25351 3.41084 3.56459 3.70742 3.76919 3.86008 3.91321 3.93397 4.19111 4.25634 4.28441 4.31905 4.47423 4.55115 4.63384 4.68966 4.70049 4.79381 4.84555 4.96174 4.99992 5.02129 5.15394 5.28615 5.41435 5.56630 5.62147 5.95272 6.19420 6.27877 6.44573 6.94569 7.06743 7.14843 8.74460 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.039598 B = 0.001694 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.932893 B =16524.503682 C =16993.251898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.597 5.597 3 C 0.532 3.468 4 O -0.564 6.564 5 C -0.125 4.125 6 S -0.152 6.152 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.014 3.986 10 N -0.910 5.910 11 Si 0.997 3.003 12 H -0.262 1.262 13 H -0.279 1.279 14 H -0.262 1.262 15 C 0.112 3.888 16 C -0.149 4.149 17 C 0.147 3.853 18 N -0.702 5.702 19 C 0.424 3.576 20 C -0.249 4.249 21 C -0.002 4.002 22 C -0.252 4.252 23 C 0.323 3.677 24 F -0.127 7.127 25 N -0.612 5.612 26 C -0.152 4.152 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.271 0.729 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.408 0.592 38 H 0.162 0.838 39 H 0.180 0.820 40 H 0.164 0.836 41 H 0.099 0.901 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.285 -29.643 1.705 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.330 5.330 3 C 0.320 3.680 4 O -0.442 6.442 5 C -0.276 4.276 6 S 0.076 5.924 7 C -0.695 4.695 8 H 0.100 0.900 9 C -0.191 4.191 10 N -0.547 5.547 11 Si 0.819 3.181 12 H -0.187 1.187 13 H -0.204 1.204 14 H -0.187 1.187 15 C 0.008 3.992 16 C -0.189 4.189 17 C 0.041 3.959 18 N -0.333 5.333 19 C 0.188 3.812 20 C -0.274 4.274 21 C -0.027 4.027 22 C -0.276 4.276 23 C 0.171 3.829 24 F -0.106 7.106 25 N -0.337 5.337 26 C -0.191 4.191 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.148 0.852 37 H 0.244 0.756 38 H 0.180 0.820 39 H 0.197 0.803 40 H 0.181 0.819 41 H 0.118 0.882 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.004 -29.202 1.296 29.656 hybrid contribution -1.808 0.833 -0.011 1.991 sum -6.812 -28.369 1.285 29.204 Atomic orbital electron populations 1.22047 0.77391 1.04618 1.03277 1.47728 1.08030 1.04322 1.72917 1.20126 0.87292 0.85487 0.75132 1.90669 1.15585 1.87469 1.50514 1.23395 1.02761 0.95185 1.06268 1.85550 1.12608 0.97257 1.97029 1.23164 0.94632 0.92705 1.59015 0.89964 1.26110 0.97571 1.01648 0.93730 1.70169 1.14080 1.22526 1.47888 0.85024 0.77649 0.75968 0.79485 1.18670 1.20399 1.18685 1.22475 0.97678 0.81057 0.97997 1.23799 1.04075 0.93617 0.97364 1.22314 0.92358 0.85779 0.95458 1.44581 1.23138 1.04154 1.61388 1.18139 0.88527 0.85228 0.89320 1.21838 0.99336 0.99409 1.06770 1.21670 0.97836 0.90880 0.92329 1.21795 0.94631 1.03969 1.07167 1.18036 0.85624 0.84346 0.94937 1.91588 1.61524 1.65718 1.91766 1.66113 1.34594 1.02943 1.30002 1.23999 1.02705 0.93541 0.98894 0.91184 0.90599 0.88364 0.87492 0.87634 0.91990 0.87751 0.90004 0.88122 0.85159 0.75591 0.82039 0.80277 0.81868 0.88230 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 8.86 127.77 1.13 2.23 16 2 N -0.60 -14.32 3.08 -819.31 -2.53 -16.84 16 3 C 0.53 19.17 7.69 87.66 0.67 19.84 16 4 O -0.56 -25.35 15.34 -3.02 -0.05 -25.40 16 5 C -0.13 -4.88 4.71 71.24 0.34 -4.55 16 6 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 7 C -0.55 -30.99 9.50 67.95 0.65 -30.35 16 8 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 9 C 0.01 0.81 5.49 84.86 0.47 1.28 16 10 N -0.91 -55.56 13.22 21.65 0.29 -55.27 16 11 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 12 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 13 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 15 C 0.11 2.11 4.20 45.57 0.19 2.30 16 16 C -0.15 -1.98 7.36 31.12 0.23 -1.75 16 17 C 0.15 1.50 3.98 45.52 0.18 1.68 16 18 N -0.70 -8.61 5.53 -322.08 -1.78 -10.39 16 19 C 0.42 6.66 7.65 133.04 1.02 7.67 16 20 C -0.25 -2.70 9.28 22.50 0.21 -2.49 16 21 C 0.00 -0.02 10.16 22.43 0.23 0.21 16 22 C -0.25 -3.01 10.08 22.43 0.23 -2.79 16 23 C 0.32 6.07 8.41 84.68 0.71 6.78 16 24 F -0.13 -2.60 17.29 44.97 0.78 -1.82 16 25 N -0.61 -12.59 10.40 -194.33 -2.02 -14.61 16 26 C -0.15 -1.85 7.32 31.18 0.23 -1.62 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.28 6.44 -2.38 -0.02 1.27 16 29 H 0.10 1.00 6.35 -2.39 -0.02 0.99 16 30 H 0.11 3.78 7.40 -2.40 -0.02 3.76 16 31 H 0.11 3.75 8.11 -2.39 -0.02 3.73 16 32 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.10 2.44 7.23 -2.39 -0.02 2.43 16 34 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.10 1.18 6.89 -2.39 -0.02 1.17 16 36 H 0.13 0.98 6.17 -2.39 -0.01 0.96 16 37 H 0.41 4.88 8.83 -92.71 -0.82 4.06 16 38 H 0.16 1.02 6.06 -2.91 -0.02 1.00 16 39 H 0.18 0.22 8.06 -2.91 -0.02 0.19 16 40 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 41 H 0.10 1.14 6.75 -2.38 -0.02 1.12 16 42 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -79.86 367.90 2.28 -77.58 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.25 Total: 12.65 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 6.48 Total: -1.56 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -6.04 Total: -97.12 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.40 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.78 Total: -1.82 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -79.86 2.28 -77.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126887987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.466 kcal (2) G-P(sol) polarization free energy of solvation -79.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds