Wall clock time and date at job start Sat Apr 11 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.36019 * 117.00029 * 2 1 4 4 C 1.35488 * 120.48589 * 359.97438 * 3 2 1 5 5 O 1.33832 * 121.01884 * 180.02562 * 4 3 2 6 6 C 1.34293 * 122.04055 * 0.02562 * 5 4 3 7 7 C 1.48046 * 119.57453 * 179.97438 * 6 5 4 8 8 O 1.21510 * 120.00413 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99768 * 0.02562 * 7 6 5 10 10 C 1.46506 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47306 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00351 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46877 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00031 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99356 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99762 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99610 * 359.97438 * 17 16 14 19 19 C 1.38945 * 119.99881 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00228 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99877 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47146 * 90.00165 * 21 19 17 23 23 H 1.48500 * 109.47381 * 210.00177 * 21 19 17 24 24 H 1.48507 * 109.47296 * 330.00373 * 21 19 17 25 25 C 1.35800 * 120.85121 * 0.27684 * 6 5 4 26 26 C 1.42012 * 120.48171 * 180.02562 * 3 2 1 27 27 O 1.22120 * 120.92386 * 359.97136 * 26 3 2 28 28 H 1.08998 * 109.47408 * 300.00330 * 1 2 3 29 29 H 1.09006 * 109.47245 * 60.00674 * 1 2 3 30 30 H 1.09001 * 109.47100 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.48989 * 0.02562 * 4 3 2 32 32 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 34 34 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 35 35 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 36 36 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 37 37 H 1.00903 * 111.00189 * 56.03913 * 12 11 10 38 38 H 1.08993 * 109.47142 * 299.99624 * 13 12 11 39 39 H 1.09001 * 109.46897 * 60.00184 * 13 12 11 40 40 H 0.97000 * 120.00516 * 359.97438 * 16 14 13 41 41 H 0.97000 * 120.00154 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.54906 * 179.69745 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.3182 2.3545 -0.0005 5 8 1.9147 3.5525 -0.0010 6 6 3.2512 3.6829 -0.0016 7 6 3.8534 5.0354 -0.0027 8 8 5.0619 5.1625 -0.0037 9 7 3.0612 6.1257 -0.0027 10 6 3.6571 7.4641 -0.0032 11 6 2.5467 8.5167 -0.0024 12 7 3.1442 9.8587 -0.0036 13 6 2.1055 10.8975 -0.0035 14 6 2.7551 12.2573 -0.0041 15 8 3.9643 12.3518 -0.0041 16 7 1.9922 13.3684 -0.0046 17 6 2.5830 14.6056 -0.0056 18 1 3.6597 14.6897 -0.0056 19 6 1.7966 15.7511 -0.0067 20 7 0.4865 15.6486 -0.0062 21 14 2.6016 17.4367 -0.0074 22 1 2.8155 17.8825 -1.4077 23 1 1.7206 18.4064 0.6916 24 1 3.9089 17.3613 0.6932 25 6 4.0576 2.5902 -0.0073 26 6 3.4639 1.2982 -0.0005 27 8 4.1540 0.2906 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 0.2397 2.2975 -0.0005 32 1 2.0965 6.0244 -0.0023 33 1 4.2747 7.5873 0.8865 34 1 4.2740 7.5868 -0.8935 35 1 1.9289 8.3937 -0.8919 36 1 1.9303 8.3938 0.8880 37 1 3.7711 9.9748 -0.7856 38 1 1.4847 10.7906 -0.8929 39 1 1.4859 10.7916 0.8870 40 1 1.0251 13.2929 -0.0049 41 1 -0.0625 16.4483 -0.0066 42 1 5.1319 2.7008 -0.0126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131357660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:57 Heat of formation + Delta-G solvation = -121.548553 kcal Electronic energy + Delta-G solvation = -27252.267912 eV Core-core repulsion = 22814.254291 eV Total energy + Delta-G solvation = -4438.013621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.70479 -40.31048 -39.61864 -38.64420 -38.38898 -36.58498 -34.66857 -33.84052 -33.16095 -32.05812 -31.28610 -29.66361 -28.45912 -26.57576 -25.27857 -24.50781 -23.87584 -22.34234 -21.62503 -19.68439 -19.35611 -19.33185 -18.52462 -17.94008 -17.44318 -16.71879 -16.42162 -16.40428 -16.14358 -15.89062 -15.67650 -15.38316 -15.23245 -15.00439 -14.62266 -14.50449 -14.49798 -14.04366 -14.01056 -13.52439 -13.29807 -13.25162 -12.56372 -12.19386 -12.13773 -12.03643 -11.64506 -11.54778 -11.54551 -11.07208 -10.99863 -10.42364 -10.38115 -10.33688 -10.26045 -9.62717 -9.55565 -8.87388 -8.58081 -8.21790 -8.01503 -6.46411 -3.87375 -0.18193 0.36443 1.44810 2.16709 2.34152 2.44622 2.87019 3.14995 3.24244 3.30268 3.61420 3.77847 3.81579 3.85077 4.08434 4.30385 4.33141 4.45394 4.53781 4.63711 4.70811 4.82609 4.84542 4.89204 5.08694 5.20087 5.24280 5.39519 5.59369 5.61596 5.73140 5.79875 5.86534 6.17804 6.23190 6.36308 6.81525 7.00487 7.08976 7.40591 7.47434 7.51152 8.01159 8.55689 9.13130 9.48571 9.99636 10.71191 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032061 B = 0.001434 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.134236 B =19517.351744 C =20357.404139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.282 6.282 3 C -0.049 4.049 4 C -0.006 4.006 5 O -0.197 6.197 6 C 0.090 3.910 7 C 0.576 3.424 8 O -0.494 6.494 9 N -0.706 5.706 10 C 0.116 3.884 11 C 0.048 3.952 12 N -0.665 5.665 13 C 0.053 3.947 14 C 0.439 3.561 15 O -0.582 6.582 16 N -0.562 5.562 17 C -0.301 4.301 18 H 0.104 0.896 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.269 1.269 25 C -0.224 4.224 26 C 0.407 3.593 27 O -0.453 6.453 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.205 0.795 32 H 0.409 0.591 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.080 0.920 37 H 0.353 0.647 38 H 0.046 0.954 39 H 0.088 0.912 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.303 -27.818 -0.897 28.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.195 6.195 3 C -0.096 4.096 4 C -0.071 4.071 5 O -0.100 6.100 6 C 0.039 3.961 7 C 0.358 3.642 8 O -0.369 6.369 9 N -0.358 5.358 10 C -0.007 4.007 11 C -0.082 4.082 12 N -0.298 5.298 13 C -0.080 4.080 14 C 0.224 3.776 15 O -0.466 6.466 16 N -0.199 5.199 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.245 4.245 26 C 0.293 3.707 27 O -0.335 6.335 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.127 0.873 31 H 0.221 0.779 32 H 0.245 0.755 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.173 0.827 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.373 -27.944 -0.212 28.457 hybrid contribution -1.591 0.682 -0.899 1.951 sum -6.965 -27.261 -1.111 28.159 Atomic orbital electron populations 1.23265 0.78199 1.05299 1.01439 1.86303 1.21111 1.23572 1.88547 1.21040 0.95355 0.86130 1.07116 1.23914 0.98213 0.80964 1.04036 1.82887 1.20043 1.31015 1.76028 1.22411 0.80283 0.96087 0.97325 1.17292 0.86455 0.81951 0.78468 1.90936 1.12656 1.84575 1.48778 1.45836 1.10725 1.06009 1.73193 1.21492 0.96284 0.78677 1.04280 1.22076 0.95532 0.89225 1.01340 1.59931 1.18733 0.99527 1.51642 1.21672 0.93449 0.91493 1.01393 1.19757 0.87920 0.85155 0.84755 1.90538 1.14010 1.86692 1.55378 1.41854 1.08904 1.04887 1.64244 1.19719 0.94048 0.81576 1.47678 0.87851 1.25263 0.95301 1.00098 0.97204 1.69606 1.03588 1.30589 1.50497 0.85848 0.78972 0.81022 0.78401 1.20403 1.20906 1.19354 1.23210 1.03855 0.90921 1.06542 1.17110 0.86301 0.89838 0.77484 1.90866 1.65082 1.37918 1.39677 0.92174 0.92185 0.87262 0.77899 0.75544 0.89289 0.90458 0.94670 0.90208 0.82696 0.93634 0.89407 0.77455 0.91842 0.80247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.82 101.05 0.99 1.02 16 2 O -0.28 -2.25 10.35 -35.04 -0.36 -2.62 16 3 C -0.05 -0.38 6.72 -39.12 -0.26 -0.65 16 4 C -0.01 -0.02 10.43 29.75 0.31 0.29 16 5 O -0.20 -1.05 9.06 6.98 0.06 -0.99 16 6 C 0.09 0.68 6.90 -36.43 -0.25 0.43 16 7 C 0.58 5.22 7.80 -12.24 -0.10 5.12 16 8 O -0.49 -6.23 16.26 5.36 0.09 -6.14 16 9 N -0.71 -5.06 5.55 -61.19 -0.34 -5.40 16 10 C 0.12 1.05 5.93 -4.04 -0.02 1.03 16 11 C 0.05 0.46 5.80 -3.83 -0.02 0.43 16 12 N -0.67 -9.47 6.13 -115.06 -0.70 -10.18 16 13 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 14 C 0.44 9.92 7.82 -10.98 -0.09 9.83 16 15 O -0.58 -15.36 15.78 5.55 0.09 -15.28 16 16 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16 17 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 18 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -23.94 13.05 55.50 0.72 -23.21 16 21 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 25 C -0.22 -2.02 9.56 -38.94 -0.37 -2.39 16 26 C 0.41 4.32 6.82 -36.62 -0.25 4.07 16 27 O -0.45 -6.49 17.74 -10.43 -0.18 -6.68 16 28 H 0.06 0.05 7.67 -51.93 -0.40 -0.35 16 29 H 0.06 0.05 7.67 -51.93 -0.40 -0.35 16 30 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.20 0.10 6.22 -52.48 -0.33 -0.22 16 32 H 0.41 1.85 7.87 -40.82 -0.32 1.53 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.35 5.23 8.43 -39.29 -0.33 4.90 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.39 9.11 7.90 -40.82 -0.32 8.78 16 41 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 42 H 0.18 1.66 7.56 -52.49 -0.40 1.26 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -36.18 374.79 -5.36 -41.54 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -4.96 Total: 9.36 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -0.33 Total: 12.14 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.38 Total: -52.62 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.31 Total: -31.70 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.18 -5.36 -41.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131357660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.007 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds