Wall clock time and date at job start Sat Apr 11 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.36019 * 117.00029 * 2 1 4 4 C 1.35488 * 120.48589 * 359.97438 * 3 2 1 5 5 O 1.33832 * 121.01884 * 180.02562 * 4 3 2 6 6 C 1.34293 * 122.04055 * 0.02562 * 5 4 3 7 7 C 1.48046 * 119.57453 * 179.97438 * 6 5 4 8 8 O 1.21510 * 120.00413 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99768 * 0.02562 * 7 6 5 10 10 C 1.46506 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47306 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00351 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46877 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00031 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99356 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99762 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99610 * 359.97438 * 17 16 14 19 19 C 1.38945 * 119.99881 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00228 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99877 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47146 * 90.00165 * 21 19 17 23 23 H 1.48500 * 109.47381 * 210.00177 * 21 19 17 24 24 H 1.48507 * 109.47296 * 330.00373 * 21 19 17 25 25 C 1.35800 * 120.85121 * 0.27684 * 6 5 4 26 26 C 1.42012 * 120.48171 * 180.02562 * 3 2 1 27 27 O 1.22120 * 120.92386 * 359.97136 * 26 3 2 28 28 H 1.08998 * 109.47408 * 300.00330 * 1 2 3 29 29 H 1.09006 * 109.47245 * 60.00674 * 1 2 3 30 30 H 1.09001 * 109.47100 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.48989 * 0.02562 * 4 3 2 32 32 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 34 34 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 35 35 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 36 36 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 37 37 H 1.00903 * 111.00189 * 56.03913 * 12 11 10 38 38 H 1.08993 * 109.47142 * 299.99624 * 13 12 11 39 39 H 1.09001 * 109.46897 * 60.00184 * 13 12 11 40 40 H 0.97000 * 120.00516 * 359.97438 * 16 14 13 41 41 H 0.97000 * 120.00154 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.54906 * 179.69745 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.3182 2.3545 -0.0005 5 8 1.9147 3.5525 -0.0010 6 6 3.2512 3.6829 -0.0016 7 6 3.8534 5.0354 -0.0027 8 8 5.0619 5.1625 -0.0037 9 7 3.0612 6.1257 -0.0027 10 6 3.6571 7.4641 -0.0032 11 6 2.5467 8.5167 -0.0024 12 7 3.1442 9.8587 -0.0036 13 6 2.1055 10.8975 -0.0035 14 6 2.7551 12.2573 -0.0041 15 8 3.9643 12.3518 -0.0041 16 7 1.9922 13.3684 -0.0046 17 6 2.5830 14.6056 -0.0056 18 1 3.6597 14.6897 -0.0056 19 6 1.7966 15.7511 -0.0067 20 7 0.4865 15.6486 -0.0062 21 14 2.6016 17.4367 -0.0074 22 1 2.8155 17.8825 -1.4077 23 1 1.7206 18.4064 0.6916 24 1 3.9089 17.3613 0.6932 25 6 4.0576 2.5902 -0.0073 26 6 3.4639 1.2982 -0.0005 27 8 4.1540 0.2906 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 0.2397 2.2975 -0.0005 32 1 2.0965 6.0244 -0.0023 33 1 4.2747 7.5873 0.8865 34 1 4.2740 7.5868 -0.8935 35 1 1.9289 8.3937 -0.8919 36 1 1.9303 8.3938 0.8880 37 1 3.7711 9.9748 -0.7856 38 1 1.4847 10.7906 -0.8929 39 1 1.4859 10.7916 0.8870 40 1 1.0251 13.2929 -0.0049 41 1 -0.0625 16.4483 -0.0066 42 1 5.1319 2.7008 -0.0126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131357660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:57 Heat of formation + Delta-G solvation = -152.743984 kcal Electronic energy + Delta-G solvation = -27253.620647 eV Core-core repulsion = 22814.254291 eV Total energy + Delta-G solvation = -4439.366356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.32008 -41.02775 -40.24657 -40.11171 -39.28038 -37.58561 -36.03482 -35.38570 -33.88947 -33.25304 -32.64869 -30.64474 -28.71387 -27.88944 -26.40317 -25.26400 -25.02752 -23.16544 -22.37186 -21.07732 -20.25201 -19.90958 -19.89972 -19.15214 -18.02655 -17.77624 -17.35989 -17.23984 -17.11527 -16.69533 -16.47689 -16.27079 -16.07245 -15.97343 -15.87136 -15.47229 -15.28620 -15.26554 -15.16318 -14.85994 -14.39943 -14.00725 -13.77636 -13.50802 -13.30305 -12.93172 -12.58858 -12.47305 -12.45295 -12.42047 -12.38990 -12.11431 -11.82270 -11.49086 -11.13082 -10.98317 -10.35335 -10.33369 -9.99437 -9.43622 -9.34313 -8.45481 -5.93735 -0.88816 -0.19098 0.81802 1.39291 1.43598 1.43725 1.55710 1.66452 2.00717 2.08089 2.19022 2.31105 2.94568 3.17662 3.22250 3.22716 3.32037 3.61970 3.81281 3.87591 4.13882 4.19087 4.24897 4.30875 4.34924 4.40523 4.50148 4.54638 4.65258 4.76111 4.78804 4.86850 4.94410 5.08115 5.42882 5.61625 5.86858 5.96583 6.09124 6.20342 6.36680 6.45063 6.62251 6.77084 7.14864 7.58875 8.14609 8.71685 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032061 B = 0.001434 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.134236 B =19517.351744 C =20357.404139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.316 6.316 3 C -0.077 4.077 4 C 0.038 3.962 5 O -0.176 6.176 6 C 0.113 3.887 7 C 0.578 3.422 8 O -0.535 6.535 9 N -0.685 5.685 10 C 0.122 3.878 11 C 0.056 3.944 12 N -0.687 5.687 13 C 0.069 3.931 14 C 0.434 3.566 15 O -0.626 6.626 16 N -0.573 5.573 17 C -0.335 4.335 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.919 5.919 21 Si 0.990 3.010 22 H -0.271 1.271 23 H -0.271 1.271 24 H -0.275 1.275 25 C -0.238 4.238 26 C 0.395 3.605 27 O -0.517 6.517 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.257 0.743 32 H 0.426 0.574 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.347 0.653 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.398 0.602 41 H 0.277 0.723 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 -27.458 -1.004 29.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.231 6.231 3 C -0.124 4.124 4 C -0.027 4.027 5 O -0.077 6.077 6 C 0.060 3.940 7 C 0.361 3.639 8 O -0.412 6.412 9 N -0.338 5.338 10 C -0.002 4.002 11 C -0.073 4.073 12 N -0.320 5.320 13 C -0.063 4.063 14 C 0.222 3.778 15 O -0.512 6.512 16 N -0.210 5.210 17 C -0.465 4.465 18 H 0.095 0.905 19 C -0.210 4.210 20 N -0.559 5.559 21 Si 0.814 3.186 22 H -0.197 1.197 23 H -0.196 1.196 24 H -0.200 1.200 25 C -0.260 4.260 26 C 0.286 3.714 27 O -0.405 6.405 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.273 0.727 32 H 0.265 0.735 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.166 0.834 38 H 0.092 0.908 39 H 0.128 0.872 40 H 0.232 0.768 41 H 0.087 0.913 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.886 -27.574 -0.317 28.972 hybrid contribution -0.637 0.575 -0.862 1.217 sum -9.524 -26.999 -1.179 28.653 Atomic orbital electron populations 1.23635 0.75508 1.06693 1.03514 1.86265 1.23950 1.23805 1.89049 1.20785 0.94204 0.87565 1.09827 1.24740 0.99618 0.79154 0.99222 1.82948 1.18599 1.31668 1.74502 1.21985 0.81003 0.94758 0.96220 1.17366 0.86019 0.82566 0.77945 1.90930 1.14533 1.85163 1.50610 1.45612 1.11454 1.04817 1.71875 1.21297 0.96243 0.79424 1.03207 1.22093 0.95484 0.86376 1.03366 1.59885 1.18916 1.01332 1.51832 1.21520 0.93472 0.87625 1.03722 1.20998 0.87515 0.87135 0.82139 1.90508 1.16257 1.87813 1.56646 1.41919 1.09222 1.04807 1.65065 1.19658 0.93269 0.83605 1.49958 0.90460 1.25976 0.95854 1.02918 0.96295 1.69655 1.04253 1.31713 1.50325 0.84965 0.77919 0.77075 0.78611 1.19672 1.19572 1.19971 1.23062 1.03729 0.91165 1.08046 1.17574 0.87974 0.89482 0.76373 1.90829 1.66486 1.39405 1.43764 0.89945 0.89930 0.86608 0.72717 0.73483 0.91030 0.91177 0.92054 0.88466 0.83437 0.90775 0.87190 0.76828 0.91310 0.81514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.82 113.37 1.11 1.11 16 2 O -0.32 -4.77 10.35 -79.20 -0.82 -5.59 16 3 C -0.08 -1.11 6.72 22.57 0.15 -0.96 16 4 C 0.04 0.19 10.43 67.18 0.70 0.89 16 5 O -0.18 -1.17 9.06 2.07 0.02 -1.16 16 6 C 0.11 1.53 6.90 24.31 0.17 1.69 16 7 C 0.58 9.66 7.80 86.85 0.68 10.34 16 8 O -0.53 -13.58 16.26 -3.75 -0.06 -13.64 16 9 N -0.69 -7.85 5.55 -465.79 -2.59 -10.43 16 10 C 0.12 1.96 5.93 86.38 0.51 2.47 16 11 C 0.06 0.85 5.80 86.30 0.50 1.35 16 12 N -0.69 -18.06 6.13 -517.95 -3.17 -21.23 16 13 C 0.07 2.01 6.17 85.56 0.53 2.54 16 14 C 0.43 19.47 7.82 87.66 0.69 20.16 16 15 O -0.63 -33.57 15.78 -3.06 -0.05 -33.61 16 16 N -0.57 -28.05 5.29 -306.98 -1.62 -29.68 16 17 C -0.34 -18.58 9.68 84.04 0.81 -17.77 16 18 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 19 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 20 N -0.92 -48.00 13.05 21.66 0.28 -47.72 16 21 Si 0.99 42.02 29.55 68.60 2.03 44.04 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 C -0.24 -4.48 9.56 22.69 0.22 -4.27 16 26 C 0.39 8.85 6.82 24.19 0.16 9.02 16 27 O -0.52 -16.39 17.74 8.86 0.16 -16.23 16 28 H 0.08 -0.20 7.67 -2.39 -0.02 -0.22 16 29 H 0.08 -0.21 7.67 -2.38 -0.02 -0.23 16 30 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.26 -1.43 6.22 -2.91 -0.02 -1.45 16 32 H 0.43 1.93 7.87 -92.71 -0.73 1.20 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.35 9.87 8.43 -89.69 -0.76 9.12 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 40 H 0.40 18.22 7.90 -92.71 -0.73 17.49 16 41 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 42 H 0.17 3.49 7.56 -2.91 -0.02 3.47 16 Total: -1.00 -84.40 374.79 -0.23 -84.63 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -1.10 Total: 24.13 kcal Atomic # 6 Polarization: 19.79 SS G_CDS: 6.70 Total: 26.49 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -7.10 Total: -109.05 kcal Atomic # 8 Polarization: -69.48 SS G_CDS: -0.75 Total: -70.23 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -84.40 -0.23 -84.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131357660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.116 kcal (2) G-P(sol) polarization free energy of solvation -84.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds