Wall clock time and date at job start Sat Apr 11 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 117.00205 * 2 1 4 4 O 1.20823 * 119.99870 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99818 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.46780 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.46964 * 179.97438 * 6 5 3 8 8 C 1.37096 * 120.00117 * 270.00204 * 7 6 5 9 9 H 1.08004 * 120.00045 * 145.30400 * 8 7 6 10 10 C 1.38952 * 120.00020 * 325.30973 * 8 7 6 11 11 N 1.31410 * 119.99713 * 337.26517 * 10 8 7 12 12 Si 1.86795 * 120.00196 * 157.27077 * 10 8 7 13 13 H 1.48500 * 109.47592 * 89.99561 * 12 10 8 14 14 H 1.48501 * 109.47032 * 210.00041 * 12 10 8 15 15 H 1.48509 * 109.46788 * 329.99577 * 12 10 8 16 16 C 1.34777 * 119.99818 * 90.00197 * 7 6 5 17 17 O 1.21290 * 119.99840 * 4.89058 * 16 7 6 18 18 C 1.50700 * 119.99787 * 184.88480 * 16 7 6 19 19 C 1.53003 * 109.46927 * 177.72207 * 18 16 7 20 20 N 1.46505 * 109.47204 * 179.97438 * 19 18 16 21 21 C 1.37894 * 120.05971 * 89.99816 * 20 19 18 22 22 C 1.32992 * 121.65015 * 179.74369 * 21 20 19 23 23 N 1.37888 * 121.65513 * 0.23944 * 22 21 20 24 24 H 0.96997 * 120.06387 * 180.02562 * 23 22 21 25 25 C 1.35064 * 119.87856 * 0.02562 * 23 22 21 26 26 O 1.21578 * 120.77077 * 179.97438 * 25 23 22 27 27 C 1.35062 * 120.06443 * 270.26628 * 20 19 18 28 28 O 1.21583 * 120.76256 * 359.96272 * 27 20 19 29 29 H 1.09001 * 109.46875 * 299.99993 * 1 2 3 30 30 H 1.09008 * 109.47281 * 59.99530 * 1 2 3 31 31 H 1.08998 * 109.47700 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46914 * 60.00948 * 5 3 2 33 33 H 1.08994 * 109.47473 * 299.99966 * 5 3 2 34 34 H 1.09003 * 109.47320 * 60.00273 * 6 5 3 35 35 H 1.08994 * 109.47671 * 300.00216 * 6 5 3 36 36 H 0.97007 * 120.00083 * 185.02337 * 11 10 8 37 37 H 1.08998 * 109.47280 * 57.72389 * 18 16 7 38 38 H 1.08999 * 109.47259 * 297.72362 * 18 16 7 39 39 H 1.08998 * 109.46992 * 60.00006 * 19 18 16 40 40 H 1.08999 * 109.47278 * 300.00144 * 19 18 16 41 41 H 1.08003 * 119.17453 * 0.02696 * 21 20 19 42 42 H 1.08003 * 119.16841 * 180.25989 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8186 -0.0011 8 6 6.1477 2.8548 1.1862 9 1 7.1103 2.3721 1.2696 10 6 5.6030 3.5125 2.2824 11 7 4.7004 4.4507 2.1038 12 14 6.1540 3.0632 4.0098 13 1 7.3145 3.9061 4.3943 14 1 5.0375 3.2941 4.9612 15 1 6.5480 1.6318 4.0470 16 6 6.1362 2.8534 -1.1683 17 8 5.5292 2.9110 -2.2168 18 6 7.6428 2.8211 -1.1705 19 6 8.1506 2.8138 -2.6138 20 7 9.6153 2.7829 -2.6161 21 6 10.2807 1.5751 -2.6199 22 6 11.6090 1.5102 -2.6272 23 7 12.3891 2.6472 -2.6263 24 1 13.3562 2.5730 -2.6320 25 6 11.8041 3.8646 -2.6174 26 8 12.4762 4.8777 -2.6160 27 6 10.3164 3.9373 -2.6090 28 8 9.7463 5.0111 -2.6013 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.9556 0.7809 -0.8909 33 1 3.9564 0.7805 0.8891 34 1 3.6108 3.2363 0.8889 35 1 3.6102 3.2359 -0.8910 36 1 4.3736 4.9600 2.8620 37 1 7.9877 1.9222 -0.6595 38 1 8.0260 3.7017 -0.6550 39 1 7.8057 3.7126 -3.1249 40 1 7.7674 1.9331 -3.1293 41 1 9.7088 0.6589 -2.6217 42 1 12.0887 0.5426 -2.6342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152128712.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:01 Heat of formation + Delta-G solvation = -155.115779 kcal Electronic energy + Delta-G solvation = -29361.366733 eV Core-core repulsion = 24921.897528 eV Total energy + Delta-G solvation = -4439.469205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.58422 -40.09542 -38.97088 -38.35127 -37.68369 -36.24415 -35.28036 -34.81760 -32.10425 -31.57266 -30.55810 -29.48127 -27.59734 -26.13940 -25.13153 -23.76277 -23.51414 -22.08992 -20.25156 -19.19658 -19.01058 -18.71666 -17.49884 -17.38216 -16.84464 -16.33759 -16.23161 -16.17213 -16.11545 -15.46501 -14.89042 -14.83484 -14.53243 -14.37377 -13.97399 -13.86290 -13.64742 -13.34599 -13.27317 -12.75964 -12.68113 -12.37530 -12.25432 -11.96823 -11.87548 -11.64533 -11.51907 -11.29829 -11.10880 -10.80411 -10.63471 -10.58071 -10.49271 -10.39489 -10.11929 -10.04016 -9.83245 -9.28446 -8.62576 -7.75675 -7.67951 -6.47709 -4.17032 1.22791 1.57871 2.33531 2.62736 2.81329 3.00356 3.04418 3.15560 3.17281 3.33858 3.72984 3.98481 4.02970 4.60589 4.74576 4.85382 5.02551 5.20484 5.23142 5.27009 5.27637 5.42895 5.44049 5.60063 5.73533 5.80995 5.82679 5.93924 6.18367 6.22273 6.23522 6.45032 6.52595 6.56850 6.68982 6.83682 7.12571 7.24665 7.32450 7.41710 7.77191 7.85138 8.13860 8.22566 8.94349 9.33381 9.76884 10.53714 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.003024 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.306489 B = 9257.680953 C =10499.552941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.465 3.535 4 O -0.504 6.504 5 C -0.122 4.122 6 C 0.121 3.879 7 N -0.434 5.434 8 C -0.355 4.355 9 H 0.093 0.907 10 C 0.047 3.953 11 N -0.849 5.849 12 Si 0.912 3.088 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.267 1.267 16 C 0.475 3.525 17 O -0.605 6.605 18 C -0.134 4.134 19 C 0.118 3.882 20 N -0.515 5.515 21 C 0.033 3.967 22 C -0.006 4.006 23 N -0.626 5.626 24 H 0.416 0.584 25 C 0.498 3.502 26 O -0.490 6.490 27 C 0.490 3.510 28 O -0.471 6.471 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.274 0.726 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.172 0.828 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.958 -14.014 -4.739 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.308 3.692 4 O -0.390 6.390 5 C -0.161 4.161 6 C -0.003 4.003 7 N -0.151 5.151 8 C -0.482 4.482 9 H 0.111 0.889 10 C -0.161 4.161 11 N -0.484 5.484 12 Si 0.738 3.262 13 H -0.201 1.201 14 H -0.206 1.206 15 H -0.191 1.191 16 C 0.263 3.737 17 O -0.491 6.491 18 C -0.174 4.174 19 C -0.003 4.003 20 N -0.240 5.240 21 C -0.087 4.087 22 C -0.126 4.126 23 N -0.274 5.274 24 H 0.254 0.746 25 C 0.281 3.719 26 O -0.361 6.361 27 C 0.273 3.727 28 O -0.340 6.340 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.190 0.810 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.056 -12.200 -5.100 14.544 hybrid contribution 0.452 -0.371 1.168 1.307 sum 6.509 -12.571 -3.932 14.692 Atomic orbital electron populations 1.23170 0.77335 1.03032 1.02370 1.86532 1.22770 1.34411 1.84689 1.24062 0.92394 0.80909 0.71826 1.90659 1.67252 1.36227 1.44906 1.21869 0.85867 1.03269 1.05093 1.21247 0.82114 0.91072 1.05847 1.43372 1.04516 1.62473 1.04766 1.19380 1.05430 1.36249 0.87124 0.88894 1.25389 0.96334 0.93955 1.00407 1.69847 1.28976 1.17197 1.32369 0.86173 0.78554 0.79429 0.82062 1.20097 1.20597 1.19135 1.20117 0.88762 0.80591 0.84188 1.90556 1.70352 1.56307 1.31919 1.21657 0.95327 1.04577 0.95874 1.21731 0.74371 1.05762 0.98471 1.45795 1.09121 1.04803 1.64293 1.21175 0.92007 0.90027 1.05519 1.20930 0.90411 0.91066 1.10231 1.43512 1.11166 1.05098 1.67602 0.74644 1.20457 0.89175 0.83654 0.78612 1.90905 1.63889 1.34182 1.47123 1.20267 0.87723 0.84762 0.79906 1.90931 1.69659 1.27736 1.45625 0.92151 0.92166 0.88609 0.88614 0.87699 0.86319 0.91393 0.91560 0.89670 0.88830 0.88118 0.88534 0.81047 0.81082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.75 10.56 -39.25 -0.41 -6.16 16 3 C 0.47 8.66 7.96 36.01 0.29 8.95 16 4 O -0.50 -10.79 15.73 -18.75 -0.29 -11.09 16 5 C -0.12 -2.30 6.14 -27.88 -0.17 -2.47 16 6 C 0.12 2.81 4.34 -4.04 -0.02 2.80 16 7 N -0.43 -10.16 2.54 -114.81 -0.29 -10.45 16 8 C -0.35 -8.34 8.73 -14.93 -0.13 -8.47 16 9 H 0.09 2.03 6.95 -52.48 -0.36 1.67 16 10 C 0.05 1.14 4.95 -17.47 -0.09 1.05 16 11 N -0.85 -22.17 11.34 55.50 0.63 -21.54 16 12 Si 0.91 18.60 29.61 -169.99 -5.03 13.56 16 13 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 14 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 15 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 16 C 0.47 10.54 7.62 -10.99 -0.08 10.46 16 17 O -0.60 -14.59 15.54 5.55 0.09 -14.51 16 18 C -0.13 -2.38 4.65 -27.88 -0.13 -2.51 16 19 C 0.12 1.78 4.70 -4.04 -0.02 1.76 16 20 N -0.51 -6.68 2.65 -116.81 -0.31 -6.99 16 21 C 0.03 0.27 10.25 -16.64 -0.17 0.10 16 22 C -0.01 -0.04 11.10 -16.65 -0.18 -0.22 16 23 N -0.63 -5.35 5.38 -12.59 -0.07 -5.42 16 24 H 0.42 2.40 8.93 -40.82 -0.36 2.04 16 25 C 0.50 7.02 8.03 -11.69 -0.09 6.92 16 26 O -0.49 -8.63 17.85 -10.30 -0.18 -8.82 16 27 C 0.49 7.90 7.73 -11.69 -0.09 7.81 16 28 O -0.47 -9.70 16.68 -10.30 -0.17 -9.87 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 33 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.12 3.04 5.32 -51.93 -0.28 2.77 16 35 H 0.07 1.71 7.32 -51.93 -0.38 1.33 16 36 H 0.27 6.80 8.32 -40.82 -0.34 6.46 16 37 H 0.08 1.31 7.68 -51.93 -0.40 0.91 16 38 H 0.09 1.88 8.09 -51.93 -0.42 1.46 16 39 H 0.10 1.81 7.40 -51.93 -0.38 1.42 16 40 H 0.10 1.25 8.02 -51.93 -0.42 0.84 16 41 H 0.17 0.86 8.06 -52.48 -0.42 0.43 16 42 H 0.17 0.31 8.06 -52.48 -0.42 -0.12 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -35.26 370.79 -5.39 -40.65 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.10 Total: 7.39 kcal Atomic # 6 Polarization: 27.48 SS G_CDS: 0.18 Total: 27.65 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.04 Total: -44.40 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.98 Total: -50.44 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.26 -5.39 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152128712.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.465 kcal (2) G-P(sol) polarization free energy of solvation -35.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds