Wall clock time and date at job start Sat Apr 11 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45204 * 109.46865 * 2 1 4 4 C 1.34223 * 116.99978 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99986 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99953 * 180.02562 * 4 3 2 7 7 N 1.46506 * 109.47008 * 179.97438 * 6 4 3 8 8 C 1.46503 * 120.00105 * 269.99685 * 7 6 4 9 9 C 1.50693 * 109.47275 * 270.00285 * 8 7 6 10 10 H 1.08001 * 120.00181 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00077 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99879 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99572 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47206 * 90.00127 * 13 11 9 15 15 H 1.48503 * 109.46658 * 209.99933 * 13 11 9 16 16 H 1.48499 * 109.47383 * 329.99567 * 13 11 9 17 17 C 1.39024 * 119.99711 * 90.00331 * 7 6 4 18 18 C 1.38902 * 119.66999 * 184.99881 * 17 7 6 19 19 C 1.38918 * 119.02461 * 179.69740 * 18 17 7 20 20 O 1.35753 * 120.80120 * 180.25629 * 19 18 17 21 21 C 1.42901 * 117.00078 * 359.97438 * 20 19 18 22 22 C 1.39488 * 118.39099 * 0.27829 * 19 18 17 23 23 N 1.48014 * 120.36818 * 179.97438 * 22 19 18 24 24 O 1.21797 * 119.99766 * 179.97438 * 23 22 19 25 25 O 1.21802 * 119.99695 * 359.97438 * 23 22 19 26 26 C 1.37800 * 119.25702 * 359.97438 * 22 19 18 27 27 N 1.32051 * 120.91741 * 359.97438 * 26 22 19 28 28 H 1.08998 * 109.47232 * 59.99814 * 1 2 3 29 29 H 1.09001 * 109.46550 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46778 * 299.99760 * 1 2 3 31 31 H 1.08998 * 109.46778 * 240.00240 * 2 1 3 32 32 H 1.08998 * 109.47232 * 120.00186 * 2 1 3 33 33 H 1.08997 * 109.47528 * 60.00138 * 6 4 3 34 34 H 1.09001 * 109.47413 * 299.99712 * 6 4 3 35 35 H 1.09002 * 109.46749 * 30.00552 * 8 7 6 36 36 H 1.08995 * 109.46666 * 149.99616 * 8 7 6 37 37 H 0.97006 * 119.99609 * 179.97438 * 12 11 9 38 38 H 1.08002 * 120.49118 * 359.97438 * 18 17 7 39 39 H 1.08997 * 109.47040 * 300.00134 * 21 20 19 40 40 H 1.09003 * 109.46904 * 60.00377 * 21 20 19 41 41 H 1.08992 * 109.46788 * 180.02562 * 21 20 19 42 42 H 1.08005 * 119.53733 * 179.97438 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 7 5.3836 2.8609 -0.0001 8 6 6.1153 2.8221 1.2686 9 6 6.4404 4.2276 1.7041 10 1 6.1325 5.0660 1.0969 11 6 7.1301 4.4433 2.8784 12 7 7.4133 5.6700 3.2588 13 14 7.6607 2.9933 3.9297 14 1 9.0124 2.5451 3.5087 15 1 7.6973 3.4035 5.3564 16 1 6.6944 1.8787 3.7597 17 6 6.0777 2.8251 -1.2042 18 6 7.4553 2.6477 -1.1987 19 6 8.1345 2.6076 -2.4099 20 8 9.4800 2.4307 -2.4468 21 6 10.1506 2.2905 -1.1927 22 6 7.4007 2.7541 -3.5870 23 7 8.0800 2.7189 -4.9016 24 8 7.4325 2.8470 -5.9252 25 8 9.2864 2.5618 -4.9596 26 6 6.0362 2.9319 -3.5123 27 7 5.4191 2.9645 -2.3453 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5851 3.4692 0.8904 34 1 3.5843 3.4702 -0.8895 35 1 5.5002 2.3394 2.0280 36 1 7.0394 2.2592 1.1379 37 1 7.8982 5.8217 4.0851 38 1 7.9900 2.5379 -0.2668 39 1 9.9893 3.1858 -0.5924 40 1 9.7555 1.4227 -0.6645 41 1 11.2184 2.1564 -1.3648 42 1 5.4636 3.0462 -4.4209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:21 Heat of formation + Delta-G solvation = -89.707450 kcal Electronic energy + Delta-G solvation = -30095.312581 eV Core-core repulsion = 25658.679694 eV Total energy + Delta-G solvation = -4436.632887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.19492 -42.01133 -41.44334 -39.91571 -38.27296 -37.44750 -37.29890 -34.85784 -33.23797 -32.94899 -32.31322 -30.92174 -28.82252 -28.71502 -26.85619 -24.81862 -24.40523 -23.89218 -22.92508 -21.88422 -20.54624 -19.84139 -19.35153 -19.24048 -18.75434 -18.55421 -18.34914 -17.81784 -17.37652 -17.12470 -17.01633 -16.41797 -16.08580 -16.00704 -15.41417 -15.25135 -15.08106 -14.53765 -14.41487 -14.16935 -13.74309 -13.58289 -13.49808 -13.14707 -12.86432 -12.86095 -12.79686 -12.60346 -12.54276 -12.52318 -12.35875 -12.14691 -12.13046 -11.86178 -11.71241 -11.55662 -11.30299 -11.08251 -10.87105 -10.43279 -9.11534 -8.38346 -6.47480 -1.03275 -0.09067 0.37226 0.47135 1.08421 1.25455 1.31745 1.37666 1.43710 1.74913 1.89238 2.25003 2.38028 2.93071 3.05081 3.28771 3.43072 3.66465 3.69764 3.97181 4.01807 4.06865 4.07925 4.21171 4.28266 4.29863 4.32396 4.37681 4.56396 4.62579 4.67628 4.81113 4.85127 4.92477 5.12160 5.25984 5.30793 5.39725 5.45244 5.76028 5.96754 6.14423 6.52622 6.61245 6.67857 6.72379 7.17704 8.76919 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.006990 B = 0.005233 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4004.488076 B = 5349.437834 C = 8510.623764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.356 6.356 4 C 0.454 3.546 5 O -0.534 6.534 6 C 0.128 3.872 7 N -0.551 5.551 8 C 0.230 3.770 9 C -0.543 4.543 10 H 0.044 0.956 11 C 0.031 3.969 12 N -0.932 5.932 13 Si 0.927 3.073 14 H -0.258 1.258 15 H -0.282 1.282 16 H -0.248 1.248 17 C 0.472 3.528 18 C -0.326 4.326 19 C 0.259 3.741 20 O -0.290 6.290 21 C 0.009 3.991 22 C -0.213 4.213 23 N 0.061 4.939 24 O -0.181 6.181 25 O -0.197 6.197 26 C 0.269 3.731 27 N -0.555 5.555 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.271 0.729 38 H 0.163 0.837 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.139 0.861 42 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.843 -10.083 -5.744 14.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.272 6.272 4 C 0.296 3.704 5 O -0.423 6.423 6 C 0.004 3.996 7 N -0.254 5.254 8 C 0.109 3.891 9 C -0.581 4.581 10 H 0.062 0.938 11 C -0.169 4.169 12 N -0.570 5.570 13 Si 0.750 3.250 14 H -0.183 1.183 15 H -0.208 1.208 16 H -0.171 1.171 17 C 0.237 3.763 18 C -0.353 4.353 19 C 0.203 3.797 20 O -0.198 6.198 21 C -0.085 4.085 22 C -0.306 4.306 23 N 0.571 4.429 24 O -0.393 6.393 25 O -0.404 6.404 26 C 0.103 3.897 27 N -0.277 5.277 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.180 0.820 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.157 0.843 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -8.649 -10.185 -4.801 14.199 hybrid contribution 1.651 -0.430 0.750 1.864 sum -6.998 -10.615 -4.050 13.344 Atomic orbital electron populations 1.21820 0.89958 1.04403 1.03920 1.23301 0.97347 0.79167 1.02246 1.86504 1.23229 1.33826 1.83607 1.24616 0.81063 0.93343 0.71371 1.90643 1.61250 1.43905 1.46518 1.21131 0.79168 0.90367 1.08982 1.46593 1.04939 1.70583 1.03324 1.19743 0.92997 0.96414 0.79940 1.21379 1.37538 0.91770 1.07447 0.93815 1.25597 0.94974 0.98066 0.98305 1.70010 1.40594 1.22190 1.24238 0.86021 0.80397 0.80042 0.78533 1.18264 1.20778 1.17141 1.18489 0.88080 0.83238 0.86499 1.21527 0.94814 1.20712 0.98209 1.18676 0.84511 0.85517 0.91039 1.86317 1.14647 1.83625 1.35187 1.23647 0.99197 1.02667 0.82952 1.21469 0.94936 1.33043 0.81158 1.43122 1.00787 0.96724 1.02306 1.94442 1.66172 1.54449 1.24192 1.94554 0.96983 1.54804 1.94052 1.22746 0.87444 0.82487 0.96983 1.67636 1.38085 1.25513 0.96469 0.90998 0.88165 0.91134 0.91652 0.91688 0.84251 0.83778 0.93481 0.93935 0.91987 0.81972 0.91766 0.90897 0.84273 0.76597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 10.29 71.98 0.74 -1.13 16 2 C 0.05 1.07 6.19 71.98 0.45 1.52 16 3 O -0.36 -8.98 10.22 -51.35 -0.52 -9.51 16 4 C 0.45 13.65 8.03 71.24 0.57 14.22 16 5 O -0.53 -19.26 16.18 21.95 0.36 -18.90 16 6 C 0.13 3.79 6.06 85.63 0.52 4.31 16 7 N -0.55 -19.82 2.06 -712.72 -1.47 -21.28 16 8 C 0.23 9.23 4.07 85.63 0.35 9.58 16 9 C -0.54 -26.44 9.94 25.60 0.25 -26.19 16 10 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 11 C 0.03 1.57 5.47 84.66 0.46 2.03 16 12 N -0.93 -51.83 13.96 21.45 0.30 -51.53 16 13 Si 0.93 37.41 27.47 68.60 1.88 39.29 16 14 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 15 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 16 H -0.25 -9.30 6.54 99.48 0.65 -8.65 16 17 C 0.47 16.76 7.37 132.97 0.98 17.74 16 18 C -0.33 -11.38 8.27 22.59 0.19 -11.19 16 19 C 0.26 8.75 6.71 22.73 0.15 8.90 16 20 O -0.29 -9.18 8.66 -70.17 -0.61 -9.79 16 21 C 0.01 0.21 9.84 113.37 1.12 1.33 16 22 C -0.21 -6.97 6.89 36.57 0.25 -6.71 16 23 N 0.06 2.12 4.45 -45.99 -0.20 1.91 16 24 O -0.18 -5.92 18.46 18.89 0.35 -5.57 16 25 O -0.20 -7.32 17.36 25.45 0.44 -6.88 16 26 C 0.27 7.69 10.70 84.56 0.90 8.60 16 27 N -0.56 -17.59 9.08 -193.49 -1.76 -19.35 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 32 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 33 H 0.14 3.81 8.07 -2.39 -0.02 3.79 16 34 H 0.14 3.78 7.30 -2.39 -0.02 3.76 16 35 H 0.05 1.86 7.13 -2.39 -0.02 1.85 16 36 H 0.04 1.66 5.40 -2.39 -0.01 1.65 16 37 H 0.27 14.13 8.31 -92.70 -0.77 13.36 16 38 H 0.16 5.61 4.42 -2.91 -0.01 5.60 16 39 H 0.06 1.63 7.71 -2.39 -0.02 1.62 16 40 H 0.07 1.59 7.71 -2.39 -0.02 1.58 16 41 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.22 4.58 7.60 -2.91 -0.02 4.56 16 Total: -1.00 -66.07 369.00 6.72 -59.36 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 1.02 Total: 19.25 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 6.93 Total: 22.99 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -3.13 Total: -90.25 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: 0.01 Total: -50.64 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 1.88 Total: 39.29 kcal Total: -66.07 6.72 -59.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.350 kcal (2) G-P(sol) polarization free energy of solvation -66.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds