Wall clock time and date at job start Sat Apr 11 2020 05:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45203 * 109.46579 * 2 1 4 4 C 1.34231 * 116.99500 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00270 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99985 * 180.02562 * 4 3 2 7 7 N 1.46894 * 109.47375 * 180.02562 * 6 4 3 8 8 C 1.46907 * 110.99966 * 293.94958 * 7 6 4 9 9 C 1.50694 * 109.47382 * 170.00086 * 8 7 6 10 10 H 1.08002 * 119.99947 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00244 * 179.73111 * 9 8 7 12 12 N 1.31514 * 120.00244 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99825 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47395 * 90.00379 * 13 11 9 15 15 H 1.48498 * 109.47244 * 210.00360 * 13 11 9 16 16 H 1.48505 * 109.47452 * 330.00628 * 13 11 9 17 17 C 1.39254 * 111.00115 * 170.00007 * 7 6 4 18 18 C 1.39023 * 119.70106 * 243.67410 * 17 7 6 19 19 C 1.50698 * 120.44443 * 359.97438 * 18 17 7 20 20 C 1.38389 * 119.11327 * 179.79088 * 18 17 7 21 21 N 1.48011 * 120.74333 * 180.24436 * 20 18 17 22 22 O 1.21793 * 119.99779 * 186.52750 * 21 20 18 23 23 O 1.21796 * 119.99472 * 6.52830 * 21 20 18 24 24 C 1.38821 * 118.51670 * 0.47991 * 20 18 17 25 25 C 1.38096 * 119.32048 * 359.74553 * 24 20 18 26 26 N 1.32008 * 120.84423 * 0.02562 * 25 24 20 27 27 O 1.41598 * 119.19535 * 180.02562 * 26 25 24 28 28 H 1.08995 * 109.47188 * 299.99619 * 1 2 3 29 29 H 1.08996 * 109.47001 * 59.99761 * 1 2 3 30 30 H 1.09004 * 109.46846 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47114 * 240.00853 * 2 1 3 32 32 H 1.08996 * 109.47001 * 120.00239 * 2 1 3 33 33 H 1.08997 * 109.46963 * 59.99746 * 6 4 3 34 34 H 1.09007 * 109.46885 * 299.99939 * 6 4 3 35 35 H 1.09006 * 109.46696 * 49.99937 * 8 7 6 36 36 H 1.09001 * 109.47073 * 290.00601 * 8 7 6 37 37 H 0.97000 * 119.99699 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.46936 * 96.60332 * 19 18 17 39 39 H 1.09000 * 109.47403 * 216.60327 * 19 18 17 40 40 H 1.09006 * 109.46953 * 336.60752 * 19 18 17 41 41 H 1.07999 * 120.33816 * 179.72629 * 24 20 18 42 42 H 1.08004 * 119.57694 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 7 5.3876 2.8607 0.0010 8 6 5.8843 2.2767 1.2542 9 6 7.3574 1.9870 1.1242 10 1 7.8731 2.2137 0.2027 11 6 8.0480 1.4373 2.1833 12 7 9.3337 1.1849 2.0701 13 14 7.1577 1.0521 3.7797 14 1 6.6270 -0.3339 3.7287 15 1 8.1040 1.1782 4.9171 16 1 6.0341 2.0059 3.9625 17 6 5.9529 4.1133 -0.2241 18 6 6.7121 4.3308 -1.3683 19 6 6.9270 3.2206 -2.3645 20 6 7.2646 5.5814 -1.5821 21 7 8.0744 5.8543 -2.7906 22 8 8.6523 6.9199 -2.9085 23 8 8.1628 5.0131 -3.6670 24 6 7.0464 6.5730 -0.6354 25 6 6.2858 6.2865 0.4810 26 7 5.7672 5.0853 0.6566 27 8 4.9924 4.8299 1.8140 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.5844 3.4694 0.8911 34 1 3.5850 3.4699 -0.8889 35 1 5.3486 1.3500 1.4605 36 1 5.7228 2.9794 2.0716 37 1 9.8196 0.7985 2.8154 38 1 6.2034 3.3141 -3.1743 39 1 7.9366 3.2867 -2.7700 40 1 6.7963 2.2582 -1.8698 41 1 7.4674 7.5583 -0.7705 42 1 6.1131 7.0549 1.2200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:29 Heat of formation + Delta-G solvation = 9.689696 kcal Electronic energy + Delta-G solvation = -30916.036168 eV Core-core repulsion = 26483.713465 eV Total energy + Delta-G solvation = -4432.322703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.59993 -41.55299 -40.23548 -37.43109 -36.81414 -36.03778 -35.40718 -32.75100 -32.18548 -31.72115 -30.50540 -29.01029 -28.41327 -26.97585 -25.89426 -23.41330 -23.10071 -23.00901 -21.65657 -20.78287 -19.21217 -18.93491 -17.81091 -17.66271 -17.58148 -17.25228 -16.81409 -16.52130 -16.22563 -15.78429 -15.35102 -14.69842 -14.40060 -14.08441 -13.89139 -13.71800 -13.26809 -13.17780 -12.92338 -12.85627 -12.73471 -12.45089 -12.21699 -12.14428 -11.63367 -11.61100 -11.57611 -11.34021 -11.20474 -10.80152 -10.75192 -10.65643 -10.44137 -10.26028 -9.95421 -9.64951 -9.47619 -9.39738 -8.71355 -8.60827 -8.10799 -6.16452 -4.14365 -0.56475 0.29792 1.00795 1.08848 2.26899 2.46579 2.55903 2.81101 3.27593 3.33410 3.41827 3.64669 3.94752 4.17508 4.26959 4.37498 4.58113 4.79412 4.85599 4.89593 4.95596 5.06235 5.14497 5.19782 5.21078 5.22123 5.56351 5.63585 5.67956 5.70380 5.83750 5.92185 6.10843 6.22116 6.46693 6.52399 6.53198 6.69473 6.99674 7.21900 7.41325 7.51211 7.59803 8.02927 8.38368 8.82332 9.43941 10.95580 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008797 B = 0.005009 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3182.113255 B = 5588.366085 C = 7224.521971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.364 6.364 4 C 0.462 3.538 5 O -0.469 6.469 6 C 0.053 3.947 7 N -0.450 5.450 8 C 0.134 3.866 9 C -0.519 4.519 10 H 0.077 0.923 11 C 0.078 3.922 12 N -0.894 5.894 13 Si 0.868 3.132 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.261 1.261 17 C 0.312 3.688 18 C 0.024 3.976 19 C -0.125 4.125 20 C -0.023 4.023 21 N 0.035 4.965 22 O -0.156 6.156 23 O -0.135 6.135 24 C -0.071 4.071 25 C 0.067 3.933 26 N -0.116 5.116 27 O -0.502 6.502 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.266 0.734 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.185 0.815 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.265 7.756 -8.398 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.282 6.282 4 C 0.302 3.698 5 O -0.353 6.353 6 C -0.075 4.075 7 N -0.174 5.174 8 C 0.011 3.989 9 C -0.557 4.557 10 H 0.095 0.905 11 C -0.125 4.125 12 N -0.532 5.532 13 Si 0.694 3.306 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.185 1.185 17 C 0.092 3.908 18 C 0.020 3.980 19 C -0.181 4.181 20 C -0.113 4.113 21 N 0.556 4.444 22 O -0.370 6.370 23 O -0.353 6.353 24 C -0.090 4.090 25 C -0.079 4.079 26 N 0.204 4.796 27 O -0.561 6.561 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.202 0.798 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -12.375 6.816 -7.741 16.110 hybrid contribution -0.256 0.128 1.546 1.573 sum -12.631 6.944 -6.195 15.689 Atomic orbital electron populations 1.21794 0.92837 1.02773 1.03376 1.22988 0.95044 0.80391 1.02790 1.86454 1.24637 1.32292 1.84840 1.23228 0.80473 0.92424 0.73686 1.90756 1.59643 1.42389 1.42511 1.21669 0.87952 0.91864 1.05974 1.59966 1.03871 1.11462 1.42131 1.20995 0.97719 0.96129 0.84093 1.20855 0.90644 1.42725 1.01467 0.90452 1.24736 0.94665 0.94726 0.98370 1.69871 1.07622 1.43513 1.32218 0.86936 0.80415 0.79634 0.83583 1.19877 1.21004 1.18493 1.19547 0.96873 0.86219 0.88173 1.20040 0.89691 0.93837 0.94433 1.21305 1.04371 0.96698 0.95742 1.21259 1.03002 0.96646 0.90437 1.43151 0.99511 1.00323 1.01388 1.94549 1.45083 1.12706 1.84665 1.94540 1.66918 1.40512 1.33354 1.21467 0.95909 1.01134 0.90523 1.22519 0.96569 0.90042 0.98742 1.44942 1.16807 1.04904 1.12996 1.97570 1.53445 1.92101 1.12973 0.91542 0.91598 0.90374 0.91159 0.91201 0.86969 0.87635 0.92847 0.93260 0.92446 0.88977 0.88069 0.86945 0.79824 0.78578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 37.16 0.38 -0.90 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.36 -5.34 10.22 -39.26 -0.40 -5.74 16 4 C 0.46 8.03 7.59 36.01 0.27 8.30 16 5 O -0.47 -9.74 14.14 -18.75 -0.27 -10.01 16 6 C 0.05 0.89 5.19 -4.98 -0.03 0.86 16 7 N -0.45 -8.98 3.05 -175.86 -0.54 -9.52 16 8 C 0.13 3.30 3.19 -4.98 -0.02 3.28 16 9 C -0.52 -14.52 9.28 -34.44 -0.32 -14.84 16 10 H 0.08 2.26 7.56 -52.49 -0.40 1.86 16 11 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 12 N -0.89 -27.22 13.96 55.43 0.77 -26.45 16 13 Si 0.87 22.34 27.47 -169.99 -4.67 17.67 16 14 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.26 -6.71 6.53 56.52 0.37 -6.34 16 17 C 0.31 5.63 4.46 -154.75 -0.69 4.94 16 18 C 0.02 0.38 5.84 -104.28 -0.61 -0.23 16 19 C -0.12 -1.84 8.59 36.00 0.31 -1.53 16 20 C -0.02 -0.31 6.87 -79.68 -0.55 -0.86 16 21 N 0.04 0.49 4.45 34.09 0.15 0.65 16 22 O -0.16 -2.14 18.56 -29.46 -0.55 -2.69 16 23 O -0.13 -1.95 15.56 -29.46 -0.46 -2.40 16 24 C -0.07 -0.77 9.63 -39.42 -0.38 -1.15 16 25 C 0.07 0.85 10.69 -17.53 -0.19 0.66 16 26 N -0.12 -2.06 3.52 -12.36 -0.04 -2.10 16 27 O -0.50 -11.09 15.08 -11.47 -0.17 -11.26 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 32 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 33 H 0.11 2.02 6.23 -51.93 -0.32 1.69 16 34 H 0.11 1.39 8.06 -51.93 -0.42 0.97 16 35 H 0.05 1.38 5.23 -51.93 -0.27 1.11 16 36 H 0.05 1.32 4.61 -51.93 -0.24 1.08 16 37 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.10 1.48 5.98 -51.93 -0.31 1.17 16 40 H 0.11 1.95 7.04 -51.93 -0.37 1.59 16 41 H 0.18 1.31 7.71 -52.49 -0.40 0.90 16 42 H 0.20 1.83 8.06 -52.48 -0.42 1.40 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -36.21 357.65 -7.31 -43.53 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.86 Total: 1.27 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.68 Total: 1.68 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.35 Total: -37.43 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.84 Total: -32.11 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.21 -7.31 -43.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.216 kcal (2) G-P(sol) polarization free energy of solvation -36.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds