Wall clock time and date at job start Sat Apr 11 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.21154 * 2 1 4 4 C 1.50678 * 109.34023 * 240.40257 * 2 1 3 5 5 O 1.21307 * 120.32315 * 24.64438 * 4 2 1 6 6 N 1.35279 * 119.35959 * 204.67684 * 4 2 1 7 7 C 1.40266 * 118.25638 * 1.58538 * 6 4 2 8 8 C 1.38380 * 121.21713 * 197.98214 * 7 6 4 9 9 N 1.32732 * 118.75018 * 179.57269 * 8 7 6 10 10 C 1.32392 * 120.94529 * 359.72675 * 9 8 7 11 11 N 1.38793 * 118.97606 * 180.02562 * 10 9 8 12 12 C 1.38445 * 119.99734 * 356.72651 * 11 10 9 13 13 C 1.38946 * 120.00036 * 299.74099 * 12 11 10 14 14 H 1.08000 * 120.00377 * 149.36802 * 13 12 11 15 15 C 1.40864 * 120.00219 * 329.36705 * 13 12 11 16 16 N 1.30323 * 119.99474 * 3.39809 * 15 13 12 17 17 Si 1.86794 * 120.00365 * 183.39568 * 15 13 12 18 18 H 1.48505 * 109.46830 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46926 * 120.00091 * 17 15 13 20 20 H 1.48492 * 109.47443 * 240.00192 * 17 15 13 21 21 C 1.41127 * 119.99597 * 119.74176 * 12 11 10 22 22 C 1.43208 * 119.99531 * 185.12571 * 21 12 11 23 23 N 9.90087 * 136.09952 * 328.78516 * 3 1 2 24 24 C 1.43198 * 120.00556 * 5.12194 * 21 12 11 25 25 N 7.93864 * 140.08286 * 66.94787 * 2 1 3 26 26 N 1.32526 * 122.04970 * 0.08915 * 10 9 8 27 27 C 1.32780 * 120.42015 * 359.96594 * 26 10 9 28 28 N 1.38293 * 120.88462 * 179.85384 * 27 26 10 29 29 C 1.46903 * 110.99668 * 19.92412 * 28 27 26 30 30 H 1.08993 * 109.47578 * 179.60121 * 1 2 3 31 31 H 1.09003 * 109.46807 * 299.60427 * 1 2 3 32 32 H 1.09007 * 109.47455 * 59.59625 * 1 2 3 33 33 H 0.96994 * 120.87073 * 181.32449 * 6 4 2 34 34 H 1.08002 * 120.64590 * 359.28849 * 8 7 6 35 35 H 0.97001 * 120.00203 * 176.72288 * 11 10 9 36 36 H 0.97000 * 120.00214 * 185.00173 * 16 15 13 37 37 H 1.08997 * 109.46715 * 185.36689 * 29 28 27 38 38 H 1.08993 * 109.47555 * 305.37501 * 29 28 27 39 39 H 1.09004 * 109.46539 * 65.37234 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0290 -0.7022 -1.2362 5 8 1.3338 -0.7636 -2.2284 6 7 3.2596 -1.2641 -1.2288 7 6 4.0129 -1.1974 -0.0474 8 6 5.3808 -1.4063 -0.0563 9 7 6.0468 -1.3231 1.0888 10 6 5.4215 -1.0405 2.2210 11 7 6.1582 -0.9631 3.3948 12 6 7.5133 -1.2463 3.3814 13 6 7.9567 -2.5021 2.9854 14 1 8.9176 -2.6086 2.5040 15 6 7.1529 -3.6366 3.2117 16 7 5.9658 -3.5007 3.7320 17 14 7.7885 -5.3356 2.7660 18 1 9.1547 -5.2191 2.1958 19 1 7.8317 -6.1833 3.9846 20 1 6.8846 -5.9551 1.7639 21 6 8.4442 -0.2593 3.7701 22 6 9.8486 -0.5138 3.6523 23 7 10.9626 -0.7122 3.5580 24 6 7.9846 0.9965 4.2822 25 7 7.6187 1.9947 4.6873 26 7 4.1138 -0.8305 2.2688 27 6 3.3813 -0.8981 1.1634 28 7 2.0156 -0.6836 1.2027 29 6 1.6327 0.0503 2.4163 30 1 -0.3634 -1.0275 -0.0072 31 1 -0.3633 0.5077 0.8935 32 1 -0.3634 0.5201 -0.8864 33 1 3.6102 -1.7048 -2.0184 34 1 5.8964 -1.6373 -0.9767 35 1 5.7236 -0.7105 4.2244 36 1 5.4413 -4.2855 3.9551 37 1 0.5464 0.1223 2.4697 38 1 2.0054 -0.4785 3.2935 39 1 2.0622 1.0517 2.3860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158213228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:32 Heat of formation + Delta-G solvation = 92.201825 kcal Electronic energy + Delta-G solvation = -28787.451452 eV Core-core repulsion = 24730.601165 eV Total energy + Delta-G solvation = -4056.850287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.81970 -40.95051 -39.21093 -38.36048 -37.07562 -36.52380 -36.42232 -34.93353 -34.28120 -32.52341 -31.35437 -29.61357 -28.74432 -28.32763 -24.98468 -24.85913 -24.01181 -22.97579 -21.19015 -20.27776 -19.81186 -19.24326 -18.81946 -18.24812 -17.97030 -17.57424 -17.28652 -16.38868 -16.17878 -16.09613 -15.58578 -15.27769 -15.20763 -14.71180 -14.59101 -14.42766 -14.32422 -13.85915 -13.74881 -13.44791 -13.40596 -13.34146 -13.09773 -13.05710 -12.94951 -12.83315 -12.70427 -12.50394 -12.46592 -12.20426 -12.00185 -11.97904 -11.48072 -11.33326 -10.96801 -10.12260 -10.00915 -9.49091 -9.10191 -8.34013 -7.04359 -0.02961 0.23165 0.66318 1.32695 1.38601 1.49128 1.54879 1.86065 1.93991 2.06749 2.10188 2.24901 2.34978 2.56206 2.70118 2.97044 3.04414 3.35304 3.45330 3.56802 3.76383 3.81927 3.92529 3.98932 4.22625 4.35249 4.51719 4.60340 4.73048 4.74520 4.79333 4.98609 5.03384 5.22000 5.27247 5.45779 5.50773 5.65463 5.75605 5.95755 6.03871 6.12062 6.27933 6.54905 6.72385 6.88122 7.19035 7.35296 7.54974 7.77752 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.004040 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.658792 B = 6929.458592 C = 7951.161143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.070 3.930 3 H 0.099 0.901 4 C 0.524 3.476 5 O -0.544 6.544 6 N -0.634 5.634 7 C -0.063 4.063 8 C 0.188 3.812 9 N -0.558 5.558 10 C 0.605 3.395 11 N -0.613 5.613 12 C 0.393 3.607 13 C -0.353 4.353 14 H 0.105 0.895 15 C 0.049 3.951 16 N -0.738 5.738 17 Si 0.982 3.018 18 H -0.254 1.254 19 H -0.258 1.258 20 H -0.262 1.262 21 C -0.317 4.317 22 C 0.333 3.667 23 N -0.554 5.554 24 C 0.315 3.685 25 N -0.556 5.556 26 N -0.580 5.580 27 C 0.365 3.635 28 N -0.470 5.470 29 C 0.035 3.965 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.424 0.576 34 H 0.203 0.797 35 H 0.409 0.591 36 H 0.308 0.692 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.138 -3.336 -7.509 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.040 4.040 3 H 0.116 0.884 4 C 0.311 3.689 5 O -0.420 6.420 6 N -0.282 5.282 7 C -0.168 4.168 8 C 0.019 3.981 9 N -0.281 5.281 10 C 0.247 3.753 11 N -0.241 5.241 12 C 0.288 3.712 13 C -0.381 4.381 14 H 0.123 0.877 15 C -0.180 4.180 16 N -0.358 5.358 17 Si 0.802 3.198 18 H -0.177 1.177 19 H -0.182 1.182 20 H -0.186 1.186 21 C -0.336 4.336 22 C 0.026 3.974 23 N -0.237 5.237 24 C 0.009 3.991 25 N -0.239 5.239 26 N -0.309 5.309 27 C 0.119 3.881 28 N -0.188 5.188 29 C -0.110 4.110 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.265 0.735 34 H 0.220 0.780 35 H 0.248 0.752 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.363 -2.523 -6.552 15.095 hybrid contribution -0.046 -0.618 -0.663 0.908 sum -13.409 -3.141 -7.215 15.547 Atomic orbital electron populations 1.21751 0.88119 1.03994 1.04594 1.21969 1.00270 0.97001 0.84777 0.88364 1.20850 0.80643 0.77913 0.89530 1.90756 1.56058 1.59367 1.35834 1.43252 1.16145 1.55865 1.12961 1.18639 0.93804 1.17632 0.86726 1.23060 0.87878 0.90353 0.96828 1.68224 1.39708 1.22085 0.98077 1.18626 0.83697 0.86734 0.86195 1.40791 1.06580 1.69736 1.06982 1.16590 0.79181 0.89267 0.86140 1.20311 1.02658 0.90066 1.25074 0.87750 1.27061 0.93380 1.05612 0.91948 1.69503 1.08066 1.36400 1.21782 0.85064 0.80151 0.74931 0.79658 1.17727 1.18196 1.18618 1.12973 0.84375 0.93824 1.42436 1.24730 0.91281 0.91329 0.90078 1.81019 1.12564 1.10857 1.19232 1.25369 0.92083 0.91391 0.90227 1.81128 1.09703 1.13005 1.20086 1.67538 1.05767 1.27847 1.29705 1.19376 0.89132 0.92389 0.87203 1.58096 1.06681 1.48011 1.06028 1.22481 1.02991 0.96121 0.89436 0.91748 0.88635 0.89754 0.73509 0.78017 0.75234 0.88024 0.87268 0.90099 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.62 71.98 0.62 -1.26 16 2 C 0.07 1.37 2.55 44.22 0.11 1.49 16 3 H 0.10 1.75 8.13 -2.39 -0.02 1.73 16 4 C 0.52 12.29 7.67 87.57 0.67 12.96 16 5 O -0.54 -15.04 16.96 -3.11 -0.05 -15.10 16 6 N -0.63 -13.71 5.52 -302.25 -1.67 -15.38 16 7 C -0.06 -1.63 6.53 38.21 0.25 -1.38 16 8 C 0.19 5.01 11.25 84.59 0.95 5.97 16 9 N -0.56 -19.40 8.93 -197.59 -1.76 -21.17 16 10 C 0.60 22.03 7.27 261.32 1.90 23.93 16 11 N -0.61 -23.54 3.28 -189.80 -0.62 -24.16 16 12 C 0.39 16.06 5.38 38.98 0.21 16.27 16 13 C -0.35 -14.08 7.49 23.08 0.17 -13.91 16 14 H 0.10 4.29 7.22 -2.91 -0.02 4.26 16 15 C 0.05 1.77 5.35 85.56 0.46 2.23 16 16 N -0.74 -27.05 11.20 21.98 0.25 -26.81 16 17 Si 0.98 29.11 29.57 68.60 2.03 31.14 16 18 H -0.25 -7.80 7.11 99.48 0.71 -7.09 16 19 H -0.26 -7.41 7.11 99.48 0.71 -6.70 16 20 H -0.26 -7.59 7.11 99.48 0.71 -6.88 16 21 C -0.32 -13.72 5.88 -20.08 -0.12 -13.84 16 22 C 0.33 15.08 14.01 88.34 1.24 16.31 16 23 N -0.55 -26.00 18.53 19.00 0.35 -25.64 16 24 C 0.32 14.09 14.81 88.31 1.31 15.40 16 25 N -0.56 -25.76 18.55 19.02 0.35 -25.41 16 26 N -0.58 -19.28 8.91 -195.42 -1.74 -21.02 16 27 C 0.37 10.49 6.69 133.36 0.89 11.38 16 28 N -0.47 -10.92 4.63 -707.24 -3.28 -14.20 16 29 C 0.03 0.68 8.77 127.69 1.12 1.80 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 0.95 6.45 -2.39 -0.02 0.94 16 32 H 0.08 1.22 7.88 -2.38 -0.02 1.20 16 33 H 0.42 7.20 8.92 -92.71 -0.83 6.37 16 34 H 0.20 3.71 8.06 -2.91 -0.02 3.68 16 35 H 0.41 15.55 8.91 -92.71 -0.83 14.72 16 36 H 0.31 10.29 8.29 -92.71 -0.77 9.52 16 37 H 0.11 1.41 6.39 -2.39 -0.02 1.39 16 38 H 0.08 1.89 7.45 -2.39 -0.02 1.88 16 39 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -56.62 353.68 3.17 -53.46 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -0.47 Total: 26.94 kcal Atomic # 6 Polarization: 67.56 SS G_CDS: 9.79 Total: 77.35 kcal Atomic # 7 Polarization: -165.67 SS G_CDS: -8.12 Total: -173.79 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.05 Total: -15.10 kcal Atomic # 14 Polarization: 29.11 SS G_CDS: 2.03 Total: 31.14 kcal Total: -56.62 3.17 -53.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158213228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.659 kcal (2) G-P(sol) polarization free energy of solvation -56.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds