Wall clock time and date at job start Sat Apr 11 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00476 * 2 1 4 4 H 1.48499 * 109.47256 * 270.00504 * 3 2 1 5 5 H 1.48493 * 109.47248 * 30.00385 * 3 2 1 6 6 H 1.48500 * 109.47273 * 150.00522 * 3 2 1 7 7 C 1.37881 * 119.99315 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00348 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99698 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47166 * 176.01185 * 9 7 2 11 11 C 1.46900 * 111.00298 * 296.18050 * 10 9 7 12 12 C 1.50695 * 109.46830 * 287.79201 * 11 10 9 13 13 C 1.38678 * 120.41754 * 272.70600 * 12 11 10 14 14 C 1.38621 * 118.41993 * 179.78394 * 13 12 11 15 15 C 1.38232 * 119.16314 * 0.52232 * 14 13 12 16 16 N 1.31852 * 120.75933 * 359.72028 * 15 14 13 17 17 C 1.31889 * 121.72918 * 0.02562 * 16 15 14 18 18 C 1.37850 * 110.99330 * 60.13468 * 10 9 7 19 19 N 1.32661 * 121.00622 * 255.60393 * 18 10 9 20 20 C 1.32378 * 121.50304 * 180.02562 * 19 18 10 21 21 N 1.31217 * 123.10628 * 359.97438 * 20 19 18 22 22 C 1.33936 * 120.35368 * 0.02562 * 21 20 19 23 23 C 1.40192 * 122.78100 * 179.97438 * 22 21 20 24 24 N 1.31371 * 119.85742 * 180.02562 * 23 22 21 25 25 C 1.32545 * 122.78857 * 0.02562 * 24 23 22 26 26 F 1.35101 * 119.14513 * 179.97438 * 25 24 23 27 27 C 1.36836 * 121.70551 * 359.97438 * 25 24 23 28 28 C 1.39912 * 118.53008 * 0.02562 * 27 25 24 29 29 H 0.97000 * 119.99335 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.46719 * 56.01899 * 9 7 2 31 31 H 1.09000 * 109.47601 * 296.01848 * 9 7 2 32 32 H 1.09004 * 109.46944 * 47.79480 * 11 10 9 33 33 H 1.09001 * 109.47080 * 167.79175 * 11 10 9 34 34 H 1.08005 * 120.79185 * 0.03183 * 13 12 11 35 35 H 1.08000 * 120.41798 * 180.22402 * 14 13 12 36 36 H 1.07998 * 119.61853 * 179.74471 * 15 14 13 37 37 H 1.07997 * 119.61699 * 179.97438 * 17 16 15 38 38 H 1.07999 * 118.44796 * 179.97438 * 20 19 18 39 39 H 1.08004 * 120.06595 * 0.04566 * 23 22 21 40 40 H 1.07997 * 120.73431 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1942 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5114 -1.1943 -0.0011 10 7 4.0010 -2.5759 0.0947 11 6 3.6065 -3.1870 1.3710 12 6 4.4168 -2.5828 2.4888 13 6 5.6533 -3.1127 2.8254 14 6 6.3655 -2.5216 3.8574 15 6 5.8185 -1.4384 4.5193 16 7 4.6373 -0.9642 4.1753 17 6 3.9341 -1.4980 3.1955 18 6 3.5610 -3.3309 -0.9714 19 7 2.5781 -4.2101 -0.8268 20 6 2.1481 -4.9405 -1.8436 21 7 2.6514 -4.8529 -3.0523 22 6 3.6484 -3.9965 -3.3100 23 6 4.2238 -3.8618 -4.5812 24 7 5.2002 -3.0033 -4.7695 25 6 5.6822 -2.2402 -3.7989 26 9 6.6886 -1.3821 -4.0747 27 6 5.1867 -2.2988 -2.5247 28 6 4.1448 -3.1924 -2.2534 29 1 -0.4849 0.8401 0.0004 30 1 3.8751 -0.6201 0.8511 31 1 3.8745 -0.7433 -0.9246 32 1 2.5471 -3.0032 1.5497 33 1 3.7872 -4.2612 1.3307 34 1 6.0538 -3.9631 2.2935 35 1 7.3334 -2.9057 4.1440 36 1 6.3652 -0.9748 5.3272 37 1 2.9700 -1.0823 2.9425 38 1 1.3452 -5.6416 -1.6702 39 1 3.8648 -4.4622 -5.4041 40 1 5.5915 -1.6700 -1.7456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164006462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:43 Heat of formation + Delta-G solvation = 96.626451 kcal Electronic energy + Delta-G solvation = -29037.045094 eV Core-core repulsion = 24960.466711 eV Total energy + Delta-G solvation = -4076.578383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.119 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.90082 -41.56055 -40.02561 -38.65977 -37.41496 -33.48108 -32.98946 -32.61300 -32.04836 -31.19480 -29.94168 -28.12960 -26.33109 -24.91208 -24.36861 -23.37114 -22.86567 -22.06227 -20.77159 -19.06242 -18.30812 -17.84939 -17.24038 -16.80730 -16.35505 -16.10323 -16.03284 -15.58477 -15.20728 -14.79798 -14.55820 -14.49426 -14.27287 -14.00493 -13.79615 -13.43134 -13.30553 -13.04242 -12.87139 -12.67284 -12.51287 -12.18625 -11.79912 -11.59337 -11.12892 -10.99841 -10.84325 -10.66137 -10.26551 -10.13116 -10.00938 -9.82108 -9.64034 -9.21494 -9.07347 -8.90245 -8.84602 -8.56805 -7.86389 -6.36851 -4.41806 0.12712 0.64641 1.28333 1.47557 1.77781 2.98412 3.10847 3.18805 3.21835 3.53619 3.65620 4.04616 4.09159 4.15570 4.18825 4.28059 4.51696 4.65841 4.73841 4.93654 4.95399 4.98026 5.11690 5.16248 5.17288 5.30120 5.44453 5.58357 5.62817 5.68138 5.76465 6.03905 6.16297 6.24098 6.33875 6.40472 6.43458 6.49923 6.56319 6.83713 6.94060 7.07851 7.32894 7.43763 7.52601 8.10106 8.19828 8.30181 8.67724 9.20807 10.74225 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008912 B = 0.004955 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.032150 B = 5649.572964 C = 6453.569185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.087 3.913 3 Si 0.864 3.136 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.570 4.570 8 H 0.094 0.906 9 C 0.158 3.842 10 N -0.474 5.474 11 C 0.106 3.894 12 C -0.121 4.121 13 C -0.061 4.061 14 C -0.182 4.182 15 C 0.089 3.911 16 N -0.488 5.488 17 C 0.120 3.880 18 C 0.447 3.553 19 N -0.546 5.546 20 C 0.333 3.667 21 N -0.523 5.523 22 C 0.111 3.889 23 C 0.181 3.819 24 N -0.487 5.487 25 C 0.258 3.742 26 F -0.115 7.115 27 C -0.113 4.113 28 C -0.114 4.114 29 H 0.269 0.731 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.165 0.835 38 H 0.196 0.804 39 H 0.185 0.815 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.358 -8.191 0.897 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.119 4.119 3 Si 0.690 3.310 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.608 4.608 8 H 0.111 0.889 9 C 0.035 3.965 10 N -0.192 5.192 11 C -0.021 4.021 12 C -0.124 4.124 13 C -0.088 4.088 14 C -0.202 4.202 15 C -0.068 4.068 16 N -0.197 5.197 17 C -0.037 4.037 18 C 0.195 3.805 19 N -0.266 5.266 20 C 0.043 3.957 21 N -0.241 5.241 22 C -0.019 4.019 23 C 0.008 3.992 24 N -0.200 5.200 25 C 0.116 3.884 26 F -0.094 7.094 27 C -0.137 4.137 28 C -0.126 4.126 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.182 0.818 38 H 0.213 0.787 39 H 0.201 0.799 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 10.121 -7.751 0.635 12.764 hybrid contribution 0.428 0.999 0.157 1.098 sum 10.549 -6.752 0.792 12.550 Atomic orbital electron populations 1.69881 1.06246 1.27501 1.47834 1.24833 0.94665 0.98860 0.93559 0.87025 0.80841 0.84098 0.79068 1.19900 1.20521 1.18435 1.21629 0.89009 0.95948 1.54179 0.88857 1.20571 0.96363 0.80829 0.98750 1.59477 1.53960 1.05284 1.00461 1.20883 0.99756 0.97031 0.84438 1.20825 0.95862 0.97576 0.98086 1.21457 0.93302 0.98764 0.95264 1.22049 1.01290 0.98649 0.98197 1.22721 0.92098 0.93598 0.98354 1.67759 1.07049 1.29834 1.15027 1.23028 0.99532 0.91452 0.89726 1.20052 0.83585 0.87973 0.88929 1.68704 1.10922 1.11088 1.35880 1.24784 0.95280 0.92655 0.83010 1.68702 1.11142 1.21058 1.23149 1.19823 0.94100 0.93369 0.94627 1.22605 0.89070 0.93030 0.94497 1.66668 1.12339 1.05878 1.35164 1.17467 0.89401 0.91832 0.89691 1.91610 1.56781 1.66443 1.94613 1.21526 0.96451 0.99040 0.96643 1.18959 0.98676 0.99551 0.95395 0.92127 0.92920 0.94890 0.88923 0.90231 0.85275 0.85303 0.83338 0.81784 0.78739 0.79867 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.71 13.96 55.43 0.77 -23.94 16 2 C 0.09 2.26 5.47 -17.82 -0.10 2.17 16 3 Si 0.86 19.79 27.55 -169.99 -4.68 15.10 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -5.70 6.43 56.52 0.36 -5.33 16 7 C -0.57 -13.98 8.08 -34.44 -0.28 -14.25 16 8 H 0.09 2.51 6.37 -52.49 -0.33 2.17 16 9 C 0.16 3.27 3.67 -4.97 -0.02 3.26 16 10 N -0.47 -8.45 4.15 -175.42 -0.73 -9.18 16 11 C 0.11 1.74 4.24 -4.98 -0.02 1.72 16 12 C -0.12 -1.86 4.99 -104.48 -0.52 -2.39 16 13 C -0.06 -0.79 9.87 -39.28 -0.39 -1.18 16 14 C -0.18 -2.12 10.11 -39.44 -0.40 -2.52 16 15 C 0.09 1.17 11.18 -17.55 -0.20 0.98 16 16 N -0.49 -8.02 10.36 -13.25 -0.14 -8.15 16 17 C 0.12 2.03 9.44 -17.55 -0.17 1.86 16 18 C 0.45 8.07 4.97 -154.98 -0.77 7.30 16 19 N -0.55 -9.59 8.29 -13.54 -0.11 -9.71 16 20 C 0.33 5.15 12.21 -92.14 -1.13 4.02 16 21 N -0.52 -8.22 10.47 -12.63 -0.13 -8.36 16 22 C 0.11 1.78 6.63 -84.87 -0.56 1.22 16 23 C 0.18 2.54 11.27 -17.02 -0.19 2.35 16 24 N -0.49 -7.53 10.30 -13.50 -0.14 -7.67 16 25 C 0.26 4.11 8.33 -17.75 -0.15 3.96 16 26 F -0.12 -1.80 17.27 2.25 0.04 -1.76 16 27 C -0.11 -1.82 8.72 -39.46 -0.34 -2.17 16 28 C -0.11 -1.96 5.67 -106.67 -0.60 -2.56 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.05 1.11 5.09 -51.93 -0.26 0.85 16 31 H 0.03 0.70 6.17 -51.93 -0.32 0.38 16 32 H 0.09 1.75 6.46 -51.93 -0.34 1.42 16 33 H 0.08 1.20 7.67 -51.93 -0.40 0.80 16 34 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.17 3.01 8.03 -52.49 -0.42 2.59 16 38 H 0.20 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.18 1.94 8.06 -52.48 -0.42 1.52 16 40 H 0.16 2.46 6.96 -52.49 -0.37 2.09 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -29.30 343.19 -9.51 -38.81 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -3.73 Total: 5.93 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -5.83 Total: 3.75 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -0.48 Total: -67.00 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.68 Total: 15.10 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.30 -9.51 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164006462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.435 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds