Wall clock time and date at job start Sat Apr 11 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00476 * 2 1 4 4 H 1.48499 * 109.47256 * 270.00504 * 3 2 1 5 5 H 1.48493 * 109.47248 * 30.00385 * 3 2 1 6 6 H 1.48500 * 109.47273 * 150.00522 * 3 2 1 7 7 C 1.37881 * 119.99315 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00348 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99698 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47166 * 176.01185 * 9 7 2 11 11 C 1.46900 * 111.00298 * 296.18050 * 10 9 7 12 12 C 1.50695 * 109.46830 * 287.79201 * 11 10 9 13 13 C 1.38678 * 120.41754 * 272.70600 * 12 11 10 14 14 C 1.38621 * 118.41993 * 179.78394 * 13 12 11 15 15 C 1.38232 * 119.16314 * 0.52232 * 14 13 12 16 16 N 1.31852 * 120.75933 * 359.72028 * 15 14 13 17 17 C 1.31889 * 121.72918 * 0.02562 * 16 15 14 18 18 C 1.37850 * 110.99330 * 60.13468 * 10 9 7 19 19 N 1.32661 * 121.00622 * 255.60393 * 18 10 9 20 20 C 1.32378 * 121.50304 * 180.02562 * 19 18 10 21 21 N 1.31217 * 123.10628 * 359.97438 * 20 19 18 22 22 C 1.33936 * 120.35368 * 0.02562 * 21 20 19 23 23 C 1.40192 * 122.78100 * 179.97438 * 22 21 20 24 24 N 1.31371 * 119.85742 * 180.02562 * 23 22 21 25 25 C 1.32545 * 122.78857 * 0.02562 * 24 23 22 26 26 F 1.35101 * 119.14513 * 179.97438 * 25 24 23 27 27 C 1.36836 * 121.70551 * 359.97438 * 25 24 23 28 28 C 1.39912 * 118.53008 * 0.02562 * 27 25 24 29 29 H 0.97000 * 119.99335 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.46719 * 56.01899 * 9 7 2 31 31 H 1.09000 * 109.47601 * 296.01848 * 9 7 2 32 32 H 1.09004 * 109.46944 * 47.79480 * 11 10 9 33 33 H 1.09001 * 109.47080 * 167.79175 * 11 10 9 34 34 H 1.08005 * 120.79185 * 0.03183 * 13 12 11 35 35 H 1.08000 * 120.41798 * 180.22402 * 14 13 12 36 36 H 1.07998 * 119.61853 * 179.74471 * 15 14 13 37 37 H 1.07997 * 119.61699 * 179.97438 * 17 16 15 38 38 H 1.07999 * 118.44796 * 179.97438 * 20 19 18 39 39 H 1.08004 * 120.06595 * 0.04566 * 23 22 21 40 40 H 1.07997 * 120.73431 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1942 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5114 -1.1943 -0.0011 10 7 4.0010 -2.5759 0.0947 11 6 3.6065 -3.1870 1.3710 12 6 4.4168 -2.5828 2.4888 13 6 5.6533 -3.1127 2.8254 14 6 6.3655 -2.5216 3.8574 15 6 5.8185 -1.4384 4.5193 16 7 4.6373 -0.9642 4.1753 17 6 3.9341 -1.4980 3.1955 18 6 3.5610 -3.3309 -0.9714 19 7 2.5781 -4.2101 -0.8268 20 6 2.1481 -4.9405 -1.8436 21 7 2.6514 -4.8529 -3.0523 22 6 3.6484 -3.9965 -3.3100 23 6 4.2238 -3.8618 -4.5812 24 7 5.2002 -3.0033 -4.7695 25 6 5.6822 -2.2402 -3.7989 26 9 6.6886 -1.3821 -4.0747 27 6 5.1867 -2.2988 -2.5247 28 6 4.1448 -3.1924 -2.2534 29 1 -0.4849 0.8401 0.0004 30 1 3.8751 -0.6201 0.8511 31 1 3.8745 -0.7433 -0.9246 32 1 2.5471 -3.0032 1.5497 33 1 3.7872 -4.2612 1.3307 34 1 6.0538 -3.9631 2.2935 35 1 7.3334 -2.9057 4.1440 36 1 6.3652 -0.9748 5.3272 37 1 2.9700 -1.0823 2.9425 38 1 1.3452 -5.6416 -1.6702 39 1 3.8648 -4.4622 -5.4041 40 1 5.5915 -1.6700 -1.7456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164006462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:43 Heat of formation + Delta-G solvation = 78.859072 kcal Electronic energy + Delta-G solvation = -29037.815545 eV Core-core repulsion = 24960.466711 eV Total energy + Delta-G solvation = -4077.348834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.119 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.13983 -42.84646 -41.16912 -39.92454 -38.75979 -34.95701 -34.59651 -33.93170 -33.28820 -32.35417 -31.26554 -29.77640 -27.60634 -26.28093 -25.61858 -24.63755 -24.25657 -23.28692 -22.13874 -20.32863 -19.69734 -19.26711 -18.88878 -17.88230 -17.65105 -17.37862 -17.22350 -16.93966 -16.62581 -16.26693 -15.83915 -15.74478 -15.52108 -15.44896 -14.97402 -14.65698 -14.53691 -14.49238 -14.24269 -13.92685 -13.80134 -13.71564 -13.42456 -13.05939 -12.61290 -12.49235 -12.25750 -12.10015 -11.88908 -11.80932 -11.36208 -11.26611 -10.89299 -10.73323 -10.34356 -10.32209 -10.19914 -9.82206 -9.22001 -8.39103 -6.45324 -1.13062 -0.63120 0.18592 0.40930 0.48407 1.26078 1.31307 1.36724 1.74458 2.23038 2.33352 2.35387 2.81838 2.86309 2.96441 3.01137 3.07665 3.26071 3.46409 3.58685 3.67530 3.88983 3.92958 4.00774 4.15592 4.17811 4.20484 4.42436 4.48398 4.56152 4.61333 4.73918 4.79373 4.91001 4.96018 5.06443 5.17156 5.23329 5.24218 5.41034 5.51146 5.83734 5.89142 5.99654 6.10625 6.30873 6.65301 7.00384 7.09069 7.19976 8.75468 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008912 B = 0.004955 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.032150 B = 5649.572964 C = 6453.569185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.034 3.966 3 Si 0.917 3.083 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.554 4.554 8 H 0.063 0.937 9 C 0.171 3.829 10 N -0.465 5.465 11 C 0.117 3.883 12 C -0.131 4.131 13 C -0.059 4.059 14 C -0.164 4.164 15 C 0.084 3.916 16 N -0.517 5.517 17 C 0.096 3.904 18 C 0.427 3.573 19 N -0.559 5.559 20 C 0.322 3.678 21 N -0.513 5.513 22 C 0.097 3.903 23 C 0.200 3.800 24 N -0.495 5.495 25 C 0.259 3.741 26 F -0.114 7.114 27 C -0.121 4.121 28 C -0.127 4.127 29 H 0.267 0.733 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.154 0.846 35 H 0.172 0.828 36 H 0.182 0.818 37 H 0.133 0.867 38 H 0.229 0.771 39 H 0.222 0.778 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.240 -9.231 0.565 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.167 4.167 3 Si 0.742 3.258 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.592 4.592 8 H 0.081 0.919 9 C 0.047 3.953 10 N -0.182 5.182 11 C -0.010 4.010 12 C -0.134 4.134 13 C -0.085 4.085 14 C -0.183 4.183 15 C -0.073 4.073 16 N -0.226 5.226 17 C -0.060 4.060 18 C 0.175 3.825 19 N -0.279 5.279 20 C 0.033 3.967 21 N -0.230 5.230 22 C -0.034 4.034 23 C 0.027 3.973 24 N -0.209 5.209 25 C 0.118 3.882 26 F -0.093 7.093 27 C -0.145 4.145 28 C -0.139 4.139 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.171 0.829 35 H 0.190 0.810 36 H 0.199 0.801 37 H 0.150 0.850 38 H 0.245 0.755 39 H 0.238 0.762 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 13.023 -8.812 0.294 15.727 hybrid contribution -0.434 1.148 0.243 1.251 sum 12.589 -7.664 0.538 14.748 Atomic orbital electron populations 1.70012 1.07910 1.28076 1.50825 1.25554 0.95202 1.02126 0.93797 0.86153 0.80265 0.80322 0.79087 1.19631 1.20887 1.16755 1.21788 0.91089 0.94473 1.51880 0.91902 1.20260 0.93576 0.82999 0.98507 1.59435 1.53799 1.03959 1.01045 1.20732 0.98002 0.97818 0.84417 1.20691 0.97126 0.97704 0.97853 1.21754 0.92059 0.99130 0.95559 1.22479 1.02329 0.97142 0.96389 1.23354 0.91028 0.93959 0.98929 1.67695 1.08741 1.30927 1.15280 1.22638 0.99157 0.92843 0.91403 1.20210 0.84291 0.88610 0.89431 1.68705 1.10851 1.11278 1.37048 1.25456 0.95849 0.92884 0.82561 1.68761 1.10673 1.20563 1.23038 1.20192 0.94440 0.93446 0.95294 1.23207 0.87578 0.92018 0.94520 1.66784 1.12916 1.06326 1.34903 1.17536 0.89224 0.91695 0.89723 1.91610 1.56700 1.66410 1.94586 1.21497 0.96612 0.99382 0.96983 1.19112 0.99187 1.00228 0.95345 0.92368 0.92881 0.94798 0.92449 0.88802 0.82870 0.81038 0.80107 0.84953 0.75528 0.76181 0.81909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.65 13.96 21.45 0.30 -54.35 16 2 C 0.03 1.83 5.47 84.66 0.46 2.30 16 3 Si 0.92 41.66 27.55 68.60 1.89 43.55 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.24 -10.34 6.43 99.48 0.64 -9.70 16 7 C -0.55 -28.25 8.08 25.60 0.21 -28.04 16 8 H 0.06 3.56 6.37 -2.91 -0.02 3.54 16 9 C 0.17 7.20 3.67 85.56 0.31 7.51 16 10 N -0.47 -16.67 4.15 -708.92 -2.94 -19.61 16 11 C 0.12 3.94 4.24 85.56 0.36 4.30 16 12 C -0.13 -4.02 4.99 -19.78 -0.10 -4.12 16 13 C -0.06 -1.37 9.87 22.47 0.22 -1.15 16 14 C -0.16 -3.20 10.11 22.36 0.23 -2.97 16 15 C 0.08 1.99 11.18 84.69 0.95 2.94 16 16 N -0.52 -16.81 10.36 -195.85 -2.03 -18.84 16 17 C 0.10 3.35 9.44 84.67 0.80 4.15 16 18 C 0.43 15.42 4.97 133.97 0.67 16.08 16 19 N -0.56 -19.74 8.29 -196.77 -1.63 -21.37 16 20 C 0.32 9.67 12.21 180.88 2.21 11.88 16 21 N -0.51 -15.31 10.47 -193.88 -2.03 -17.34 16 22 C 0.10 2.96 6.63 40.17 0.27 3.23 16 23 C 0.20 5.10 11.27 85.24 0.96 6.06 16 24 N -0.50 -14.24 10.30 -196.61 -2.03 -16.27 16 25 C 0.26 7.85 8.33 84.26 0.70 8.55 16 26 F -0.11 -3.38 17.27 44.97 0.78 -2.60 16 27 C -0.12 -3.79 8.72 22.35 0.19 -3.60 16 28 C -0.13 -4.28 5.67 -21.19 -0.12 -4.40 16 29 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 30 H 0.05 2.27 5.09 -2.38 -0.01 2.25 16 31 H 0.03 1.44 6.17 -2.39 -0.01 1.42 16 32 H 0.06 2.33 6.46 -2.38 -0.02 2.31 16 33 H 0.09 2.82 7.67 -2.39 -0.02 2.80 16 34 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.13 5.31 8.03 -2.91 -0.02 5.29 16 38 H 0.23 4.99 8.06 -2.91 -0.02 4.97 16 39 H 0.22 3.84 8.06 -2.91 -0.02 3.81 16 40 H 0.16 4.88 6.96 -2.91 -0.02 4.86 16 Total: -1.00 -66.09 343.19 1.67 -64.42 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.04 Total: 19.68 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 8.32 Total: 22.72 kcal Atomic # 7 Polarization: -137.41 SS G_CDS: -10.36 Total: -147.77 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.89 Total: 43.55 kcal Total: -66.09 1.67 -64.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164006462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.275 kcal (2) G-P(sol) polarization free energy of solvation -66.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds