Wall clock time and date at job start Sat Apr 11 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86799 * 120.00124 * 2 1 4 4 H 1.48510 * 109.46933 * 85.68234 * 3 2 1 5 5 H 1.48498 * 109.47152 * 205.68023 * 3 2 1 6 6 H 1.48496 * 109.47322 * 325.68682 * 3 2 1 7 7 C 1.39999 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99727 * 19.39359 * 7 2 1 9 9 C 1.41017 * 119.99655 * 199.39954 * 7 2 1 10 10 C 1.41014 * 120.31047 * 39.79536 * 9 7 2 11 11 F 1.35100 * 120.13041 * 359.97438 * 10 9 7 12 12 C 1.37808 * 119.74058 * 179.69166 * 10 9 7 13 13 C 1.38701 * 120.39291 * 0.58335 * 12 10 9 14 14 C 1.38356 * 120.63824 * 359.71875 * 13 12 10 15 15 C 1.38427 * 120.24127 * 359.96859 * 14 13 12 16 16 N 1.39612 * 120.19506 * 180.02562 * 15 14 13 17 17 N 1.28917 * 126.41944 * 185.22633 * 16 15 14 18 18 N 1.28569 * 109.73495 * 179.82901 * 17 16 15 19 19 C 1.33763 * 109.83935 * 0.44372 * 18 17 16 20 20 C 1.48412 * 126.31751 * 179.71172 * 19 18 17 21 21 C 1.39354 * 120.12296 * 180.02562 * 20 19 18 22 22 C 1.37990 * 119.87977 * 179.97438 * 21 20 19 23 23 C 1.38340 * 120.12483 * 0.02562 * 22 21 20 24 24 C 1.38305 * 120.24121 * 359.97438 * 23 22 21 25 25 C 1.50702 * 119.94010 * 180.02562 * 24 23 22 26 26 N 1.46903 * 109.46733 * 90.00118 * 25 24 23 27 27 C 1.38043 * 120.11553 * 359.74800 * 24 23 22 28 28 N 1.32035 * 107.36303 * 359.73698 * 19 18 17 29 29 H 0.97001 * 119.99924 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.80483 * 180.29630 * 12 10 9 31 31 H 1.07994 * 119.68010 * 179.68457 * 13 12 10 32 32 H 1.07999 * 119.88065 * 180.02562 * 14 13 12 33 33 H 1.07996 * 120.05387 * 359.95926 * 21 20 19 34 34 H 1.08001 * 119.93860 * 180.02562 * 22 21 20 35 35 H 1.08000 * 119.88388 * 180.02562 * 23 22 21 36 36 H 1.09001 * 109.46598 * 209.99823 * 25 24 23 37 37 H 1.08995 * 109.47034 * 330.00058 * 25 24 23 38 38 H 1.00892 * 110.99965 * 56.04700 * 26 25 24 39 39 H 1.00904 * 110.99502 * 179.97438 * 26 25 24 40 40 H 1.08005 * 120.05779 * 180.27818 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3986 2.0991 1.3962 5 1 3.5826 1.4155 -0.6067 6 1 1.4885 2.6246 -0.7892 7 6 2.0083 -1.2124 -0.0005 8 1 1.5142 -2.1211 -0.3115 9 6 3.3584 -1.2473 0.4051 10 6 3.7926 -0.4725 1.5004 11 9 2.9160 0.3091 2.1681 12 6 5.1134 -0.5203 1.8908 13 6 6.0193 -1.3162 1.2054 14 6 5.6120 -2.0779 0.1246 15 6 4.2903 -2.0547 -0.2861 16 7 3.8802 -2.8242 -1.3765 17 7 2.7100 -2.8227 -1.9174 18 7 2.6857 -3.6494 -2.9017 19 6 3.8791 -4.2402 -3.0279 20 6 4.2525 -5.2597 -4.0397 21 6 5.5401 -5.7927 -4.0533 22 6 5.8817 -6.7407 -4.9960 23 6 4.9490 -7.1619 -5.9268 24 6 3.6698 -6.6364 -5.9180 25 6 2.6589 -7.1006 -6.9347 26 7 1.9239 -8.2557 -6.4023 27 6 3.3155 -5.6917 -4.9758 28 7 4.6633 -3.7494 -2.0859 29 1 -0.4850 0.8401 0.0004 30 1 5.4461 0.0689 2.7325 31 1 7.0527 -1.3410 1.5180 32 1 6.3277 -2.6935 -0.4000 33 1 6.2691 -5.4641 -3.3275 34 1 6.8792 -7.1547 -5.0071 35 1 5.2205 -7.9044 -6.6626 36 1 1.9599 -6.2917 -7.1474 37 1 3.1722 -7.3880 -7.8523 38 1 1.4920 -8.0331 -5.5181 39 1 1.2391 -8.5856 -7.0660 40 1 2.3149 -5.2852 -4.9670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168883050.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:15 Heat of formation + Delta-G solvation = 141.807788 kcal Electronic energy + Delta-G solvation = -27822.367086 eV Core-core repulsion = 23747.747913 eV Total energy + Delta-G solvation = -4074.619173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.119 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -48.12846 -42.40812 -39.38193 -38.07356 -35.15024 -34.12520 -33.72222 -32.48371 -31.13521 -30.65918 -30.08120 -28.99931 -25.98691 -25.12764 -24.15986 -23.50064 -21.89898 -21.48756 -20.64071 -20.11241 -18.35753 -17.71506 -16.79797 -16.15435 -16.08383 -15.85448 -15.48590 -15.35077 -15.17334 -14.79966 -14.73057 -14.40535 -14.32163 -13.81860 -13.37377 -13.15565 -13.06638 -12.82974 -12.59677 -12.40815 -12.16130 -12.05433 -11.70469 -11.44035 -11.24883 -11.17132 -10.97562 -10.71682 -10.48114 -10.38207 -10.17407 -10.04494 -9.82685 -9.37028 -9.07364 -8.79797 -8.65530 -7.97517 -7.74485 -7.28749 -4.85714 0.83701 1.31457 1.38648 2.08835 2.53596 2.59162 2.96329 3.02326 3.05462 3.12337 3.76404 3.85925 4.09078 4.16077 4.50666 4.65088 4.73499 4.75372 4.97672 5.08860 5.16880 5.25569 5.36114 5.42777 5.53283 5.60221 5.74782 5.81091 5.86554 6.03170 6.09982 6.15201 6.25720 6.45268 6.46604 6.51871 6.58947 6.73153 6.82453 6.90371 6.95817 7.03241 7.14449 7.18823 7.34255 7.55920 8.01479 8.07691 8.27497 9.06891 9.66670 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.003020 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.567509 B = 9268.930739 C =10487.899058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.083 3.917 3 Si 0.920 3.080 4 H -0.252 1.252 5 H -0.251 1.251 6 H -0.290 1.290 7 C -0.388 4.388 8 H 0.122 0.878 9 C 0.060 3.940 10 C -0.004 4.004 11 F -0.135 7.135 12 C -0.097 4.097 13 C -0.211 4.211 14 C -0.046 4.046 15 C 0.011 3.989 16 N -0.088 5.088 17 N 0.011 4.989 18 N -0.339 5.339 19 C 0.210 3.790 20 C 0.003 3.997 21 C -0.083 4.083 22 C -0.125 4.125 23 C -0.088 4.088 24 C -0.093 4.093 25 C 0.103 3.897 26 N -0.847 5.847 27 C -0.073 4.073 28 N -0.328 5.328 29 H 0.295 0.705 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.345 0.655 39 H 0.342 0.658 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.166 -7.888 -8.105 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.142 4.142 3 Si 0.745 3.255 4 H -0.177 1.177 5 H -0.174 1.174 6 H -0.218 1.218 7 C -0.416 4.416 8 H 0.139 0.861 9 C 0.052 3.948 10 C -0.025 4.025 11 F -0.114 7.114 12 C -0.117 4.117 13 C -0.232 4.232 14 C -0.068 4.068 15 C -0.086 4.086 16 N 0.012 4.988 17 N 0.023 4.977 18 N -0.211 5.211 19 C -0.070 4.070 20 C 0.000 4.000 21 C -0.103 4.103 22 C -0.143 4.143 23 C -0.107 4.107 24 C -0.094 4.094 25 C -0.027 4.027 26 N -0.377 5.377 27 C -0.094 4.094 28 N -0.171 5.171 29 H 0.106 0.894 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.131 -7.782 -7.859 13.159 hybrid contribution -0.505 1.161 -0.056 1.268 sum 6.625 -6.621 -7.915 12.263 Atomic orbital electron populations 1.69648 1.08400 1.31470 1.28566 1.26385 0.95066 1.02213 0.90539 0.86382 0.80830 0.79061 0.79191 1.17672 1.17416 1.21776 1.19862 0.92084 0.97516 1.32122 0.86095 1.17155 0.93390 0.92356 0.91863 1.17472 0.87564 1.01759 0.95690 1.91222 1.68957 1.71891 1.79293 1.20809 0.91595 0.99350 0.99920 1.20094 0.98884 1.04085 1.00120 1.20492 0.92677 0.97537 0.96101 1.17049 0.93541 1.06650 0.91386 1.49887 1.04843 1.23588 1.20498 1.78992 1.04011 1.12607 1.02095 1.75454 1.20825 1.09976 1.14798 1.23378 0.89394 0.98337 0.95898 1.17278 0.94419 0.94740 0.93561 1.21247 0.95125 0.95672 0.98304 1.21042 0.99796 0.97900 0.95557 1.21092 0.92710 0.98452 0.98467 1.19642 0.95138 0.97233 0.97351 1.20672 0.94488 0.91812 0.95751 1.58753 1.34563 1.35821 1.08610 1.21104 0.99497 0.95796 0.93025 1.78730 1.19434 1.08713 1.10210 0.89416 0.86354 0.86265 0.86072 0.85020 0.85464 0.85805 0.94313 0.90159 0.84205 0.84559 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.26 13.93 55.55 0.77 -18.49 16 2 C 0.08 2.10 5.00 -17.32 -0.09 2.01 16 3 Si 0.92 20.51 24.48 -169.99 -4.16 16.35 16 4 H -0.25 -5.45 6.01 56.52 0.34 -5.11 16 5 H -0.25 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.39 -10.10 7.91 -37.87 -0.30 -10.40 16 8 H 0.12 3.38 6.43 -52.49 -0.34 3.04 16 9 C 0.06 1.44 4.81 -106.61 -0.51 0.93 16 10 C 0.00 -0.09 5.63 -38.69 -0.22 -0.30 16 11 F -0.13 -3.09 12.17 2.25 0.03 -3.06 16 12 C -0.10 -1.83 10.00 -39.57 -0.40 -2.22 16 13 C -0.21 -3.74 10.03 -39.37 -0.40 -4.13 16 14 C -0.05 -0.91 9.65 -39.47 -0.38 -1.29 16 15 C 0.01 0.24 6.78 -83.06 -0.56 -0.32 16 16 N -0.09 -2.07 4.47 32.79 0.15 -1.92 16 17 N 0.01 0.27 9.82 60.35 0.59 0.86 16 18 N -0.34 -7.61 12.01 32.14 0.39 -7.23 16 19 C 0.21 4.24 7.93 -156.36 -1.24 3.00 16 20 C 0.00 0.06 5.88 -104.89 -0.62 -0.56 16 21 C -0.08 -1.13 9.69 -39.26 -0.38 -1.51 16 22 C -0.12 -1.37 10.03 -39.63 -0.40 -1.77 16 23 C -0.09 -0.93 9.69 -39.52 -0.38 -1.31 16 24 C -0.09 -1.07 5.39 -104.67 -0.56 -1.63 16 25 C 0.10 0.94 6.91 -4.97 -0.03 0.91 16 26 N -0.85 -7.40 9.61 -11.41 -0.11 -7.51 16 27 C -0.07 -1.03 9.35 -39.25 -0.37 -1.40 16 28 N -0.33 -6.96 11.78 32.15 0.38 -6.58 16 29 H 0.29 6.69 8.30 -40.82 -0.34 6.35 16 30 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.12 2.17 7.71 -52.49 -0.40 1.76 16 33 H 0.13 1.76 7.87 -52.49 -0.41 1.34 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 37 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.35 3.12 8.98 -39.30 -0.35 2.76 16 39 H 0.34 2.24 9.08 -39.29 -0.36 1.88 16 40 H 0.13 1.89 7.87 -52.48 -0.41 1.48 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -28.27 347.81 -7.56 -35.83 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.01 Total: 6.51 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -6.83 Total: -20.01 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 2.17 Total: -40.87 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.03 Total: -3.06 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.16 Total: 16.35 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.27 -7.56 -35.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168883050.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.639 kcal (2) G-P(sol) polarization free energy of solvation -28.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds