Wall clock time and date at job start Sat Apr 11 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86799 * 120.00124 * 2 1 4 4 H 1.48510 * 109.46933 * 85.68234 * 3 2 1 5 5 H 1.48498 * 109.47152 * 205.68023 * 3 2 1 6 6 H 1.48496 * 109.47322 * 325.68682 * 3 2 1 7 7 C 1.39999 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99727 * 19.39359 * 7 2 1 9 9 C 1.41017 * 119.99655 * 199.39954 * 7 2 1 10 10 C 1.41014 * 120.31047 * 39.79536 * 9 7 2 11 11 F 1.35100 * 120.13041 * 359.97438 * 10 9 7 12 12 C 1.37808 * 119.74058 * 179.69166 * 10 9 7 13 13 C 1.38701 * 120.39291 * 0.58335 * 12 10 9 14 14 C 1.38356 * 120.63824 * 359.71875 * 13 12 10 15 15 C 1.38427 * 120.24127 * 359.96859 * 14 13 12 16 16 N 1.39612 * 120.19506 * 180.02562 * 15 14 13 17 17 N 1.28917 * 126.41944 * 185.22633 * 16 15 14 18 18 N 1.28569 * 109.73495 * 179.82901 * 17 16 15 19 19 C 1.33763 * 109.83935 * 0.44372 * 18 17 16 20 20 C 1.48412 * 126.31751 * 179.71172 * 19 18 17 21 21 C 1.39354 * 120.12296 * 180.02562 * 20 19 18 22 22 C 1.37990 * 119.87977 * 179.97438 * 21 20 19 23 23 C 1.38340 * 120.12483 * 0.02562 * 22 21 20 24 24 C 1.38305 * 120.24121 * 359.97438 * 23 22 21 25 25 C 1.50702 * 119.94010 * 180.02562 * 24 23 22 26 26 N 1.46903 * 109.46733 * 90.00118 * 25 24 23 27 27 C 1.38043 * 120.11553 * 359.74800 * 24 23 22 28 28 N 1.32035 * 107.36303 * 359.73698 * 19 18 17 29 29 H 0.97001 * 119.99924 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.80483 * 180.29630 * 12 10 9 31 31 H 1.07994 * 119.68010 * 179.68457 * 13 12 10 32 32 H 1.07999 * 119.88065 * 180.02562 * 14 13 12 33 33 H 1.07996 * 120.05387 * 359.95926 * 21 20 19 34 34 H 1.08001 * 119.93860 * 180.02562 * 22 21 20 35 35 H 1.08000 * 119.88388 * 180.02562 * 23 22 21 36 36 H 1.09001 * 109.46598 * 209.99823 * 25 24 23 37 37 H 1.08995 * 109.47034 * 330.00058 * 25 24 23 38 38 H 1.00892 * 110.99965 * 56.04700 * 26 25 24 39 39 H 1.00904 * 110.99502 * 179.97438 * 26 25 24 40 40 H 1.08005 * 120.05779 * 180.27818 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3986 2.0991 1.3962 5 1 3.5826 1.4155 -0.6067 6 1 1.4885 2.6246 -0.7892 7 6 2.0083 -1.2124 -0.0005 8 1 1.5142 -2.1211 -0.3115 9 6 3.3584 -1.2473 0.4051 10 6 3.7926 -0.4725 1.5004 11 9 2.9160 0.3091 2.1681 12 6 5.1134 -0.5203 1.8908 13 6 6.0193 -1.3162 1.2054 14 6 5.6120 -2.0779 0.1246 15 6 4.2903 -2.0547 -0.2861 16 7 3.8802 -2.8242 -1.3765 17 7 2.7100 -2.8227 -1.9174 18 7 2.6857 -3.6494 -2.9017 19 6 3.8791 -4.2402 -3.0279 20 6 4.2525 -5.2597 -4.0397 21 6 5.5401 -5.7927 -4.0533 22 6 5.8817 -6.7407 -4.9960 23 6 4.9490 -7.1619 -5.9268 24 6 3.6698 -6.6364 -5.9180 25 6 2.6589 -7.1006 -6.9347 26 7 1.9239 -8.2557 -6.4023 27 6 3.3155 -5.6917 -4.9758 28 7 4.6633 -3.7494 -2.0859 29 1 -0.4850 0.8401 0.0004 30 1 5.4461 0.0689 2.7325 31 1 7.0527 -1.3410 1.5180 32 1 6.3277 -2.6935 -0.4000 33 1 6.2691 -5.4641 -3.3275 34 1 6.8792 -7.1547 -5.0071 35 1 5.2205 -7.9044 -6.6626 36 1 1.9599 -6.2917 -7.1474 37 1 3.1722 -7.3880 -7.8523 38 1 1.4920 -8.0331 -5.5181 39 1 1.2391 -8.5856 -7.0660 40 1 2.3149 -5.2852 -4.9670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168883050.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:13 Heat of formation + Delta-G solvation = 123.508072 kcal Electronic energy + Delta-G solvation = -27823.160621 eV Core-core repulsion = 23747.747913 eV Total energy + Delta-G solvation = -4075.412708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.119 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.85355 -44.12138 -40.39938 -39.72980 -36.11819 -35.81402 -35.25480 -34.03228 -32.66437 -31.81222 -31.31168 -30.56897 -27.70071 -26.08959 -25.54756 -25.02817 -23.30149 -22.95937 -22.09475 -21.41390 -20.13798 -19.32429 -17.95276 -17.85894 -17.56594 -17.00222 -16.84814 -16.74221 -16.44344 -16.37274 -16.02303 -15.91685 -15.36087 -15.16223 -14.89562 -14.65250 -14.28620 -14.04947 -14.03121 -13.82551 -13.62568 -13.39140 -13.16674 -12.90651 -12.75873 -12.50569 -12.25421 -12.14268 -12.04787 -11.97048 -11.86356 -11.73480 -11.55521 -11.13679 -9.94301 -9.88299 -9.67063 -9.57378 -9.33118 -9.08613 -6.70789 -0.62705 -0.00917 0.35631 0.40981 0.86517 0.93090 1.21213 1.30189 1.34949 1.49783 1.98285 2.37863 2.71211 2.79616 2.99812 3.25434 3.58362 3.75557 3.88967 3.95756 4.07931 4.13081 4.23406 4.25436 4.32803 4.39913 4.49473 4.56878 4.59519 4.73387 4.77435 4.83088 4.92847 5.06807 5.07899 5.34115 5.40733 5.45459 5.48834 5.50603 5.56817 5.67062 5.86409 5.93752 6.14604 6.15714 6.34196 6.44138 6.56661 7.34010 7.94987 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.003020 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.567509 B = 9268.930739 C =10487.899058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.055 3.945 3 Si 0.961 3.039 4 H -0.239 1.239 5 H -0.260 1.260 6 H -0.281 1.281 7 C -0.438 4.438 8 H 0.082 0.918 9 C 0.049 3.951 10 C -0.028 4.028 11 F -0.143 7.143 12 C -0.083 4.083 13 C -0.174 4.174 14 C -0.053 4.053 15 C -0.005 4.005 16 N -0.101 5.101 17 N -0.019 5.019 18 N -0.357 5.357 19 C 0.219 3.781 20 C -0.033 4.033 21 C -0.087 4.087 22 C -0.115 4.115 23 C -0.075 4.075 24 C -0.091 4.091 25 C 0.104 3.896 26 N -0.851 5.851 27 C -0.082 4.082 28 N -0.329 5.329 29 H 0.301 0.699 30 H 0.162 0.838 31 H 0.174 0.826 32 H 0.142 0.858 33 H 0.131 0.869 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.037 0.963 37 H 0.102 0.898 38 H 0.341 0.659 39 H 0.355 0.645 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.633 -9.163 -8.739 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.165 4.165 3 Si 0.784 3.216 4 H -0.163 1.163 5 H -0.184 1.184 6 H -0.208 1.208 7 C -0.467 4.467 8 H 0.100 0.900 9 C 0.042 3.958 10 C -0.049 4.049 11 F -0.122 7.122 12 C -0.103 4.103 13 C -0.194 4.194 14 C -0.075 4.075 15 C -0.101 4.101 16 N -0.002 5.002 17 N -0.008 5.008 18 N -0.229 5.229 19 C -0.061 4.061 20 C -0.037 4.037 21 C -0.108 4.108 22 C -0.132 4.132 23 C -0.094 4.094 24 C -0.092 4.092 25 C -0.026 4.026 26 N -0.382 5.382 27 C -0.103 4.103 28 N -0.171 5.171 29 H 0.112 0.888 30 H 0.179 0.821 31 H 0.191 0.809 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.181 0.819 35 H 0.176 0.824 36 H 0.055 0.945 37 H 0.120 0.880 38 H 0.153 0.847 39 H 0.169 0.831 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.599 -9.060 -8.486 16.989 hybrid contribution -1.538 1.255 0.042 1.985 sum 10.061 -7.805 -8.443 15.279 Atomic orbital electron populations 1.69675 1.09307 1.32223 1.32207 1.26919 0.95514 1.04066 0.89987 0.85787 0.79387 0.76742 0.79720 1.16318 1.18365 1.20797 1.19588 0.93632 0.96875 1.36596 0.90011 1.17415 0.92998 0.93115 0.92242 1.17808 0.89063 1.02304 0.95693 1.91193 1.69590 1.72082 1.79296 1.21356 0.89822 0.98700 1.00420 1.20801 1.00989 1.00287 0.97279 1.20905 0.91393 0.98204 0.96967 1.17618 0.94900 1.06294 0.91288 1.50098 1.04826 1.24270 1.20965 1.79039 1.05122 1.13646 1.02963 1.75433 1.22217 1.10489 1.14766 1.24222 0.88226 0.97899 0.95793 1.17469 0.96373 0.95688 0.94167 1.21361 0.93899 0.96318 0.99207 1.21426 1.01436 0.96301 0.94056 1.21545 0.91746 0.97803 0.98274 1.19917 0.96413 0.96094 0.96757 1.20720 0.94212 0.92012 0.95679 1.58770 1.35128 1.35457 1.08879 1.21096 0.98694 0.96805 0.93698 1.78656 1.19268 1.08721 1.10480 0.88836 0.82060 0.80873 0.84011 0.85070 0.81878 0.82443 0.94461 0.88010 0.84674 0.83119 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.41 13.93 21.84 0.30 -44.10 16 2 C 0.06 2.96 5.00 85.27 0.43 3.38 16 3 Si 0.96 43.38 24.48 68.60 1.68 45.06 16 4 H -0.24 -10.15 6.01 99.48 0.60 -9.55 16 5 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.44 -24.55 7.91 23.38 0.18 -24.37 16 8 H 0.08 5.09 6.43 -2.91 -0.02 5.07 16 9 C 0.05 2.45 4.81 -21.15 -0.10 2.35 16 10 C -0.03 -1.22 5.63 22.85 0.13 -1.09 16 11 F -0.14 -6.51 12.17 44.97 0.55 -5.96 16 12 C -0.08 -2.80 10.00 22.28 0.22 -2.58 16 13 C -0.17 -5.24 10.03 22.41 0.22 -5.02 16 14 C -0.05 -1.95 9.65 22.34 0.22 -1.73 16 15 C 0.00 -0.22 6.78 38.71 0.26 0.04 16 16 N -0.10 -4.92 4.47 -50.17 -0.22 -5.15 16 17 N -0.02 -1.03 9.82 37.02 0.36 -0.67 16 18 N -0.36 -17.18 12.01 -52.23 -0.63 -17.81 16 19 C 0.22 9.17 7.93 137.38 1.09 10.26 16 20 C -0.03 -1.08 5.88 -20.04 -0.12 -1.20 16 21 C -0.09 -2.25 9.69 22.48 0.22 -2.04 16 22 C -0.11 -2.09 10.03 22.24 0.22 -1.87 16 23 C -0.07 -1.29 9.69 22.31 0.22 -1.07 16 24 C -0.09 -1.92 5.39 -19.89 -0.11 -2.03 16 25 C 0.10 1.67 6.91 85.56 0.59 2.26 16 26 N -0.85 -13.30 9.61 -190.00 -1.83 -15.13 16 27 C -0.08 -2.32 9.35 22.48 0.21 -2.11 16 28 N -0.33 -14.25 11.78 -52.19 -0.61 -14.86 16 29 H 0.30 14.72 8.30 -92.71 -0.77 13.95 16 30 H 0.16 4.11 8.06 -2.91 -0.02 4.08 16 31 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.14 4.61 7.71 -2.91 -0.02 4.59 16 33 H 0.13 3.32 7.87 -2.91 -0.02 3.30 16 34 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.04 0.62 8.09 -2.39 -0.02 0.60 16 37 H 0.10 1.23 8.08 -2.39 -0.02 1.21 16 38 H 0.34 5.90 8.98 -89.70 -0.81 5.09 16 39 H 0.35 3.97 9.08 -89.69 -0.81 3.16 16 40 H 0.12 3.61 7.87 -2.91 -0.02 3.58 16 Total: -1.00 -68.61 347.81 2.89 -65.72 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.60 Total: 19.71 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 3.89 Total: -26.81 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -2.62 Total: -97.71 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.55 Total: -5.96 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.68 Total: 45.06 kcal Total: -68.61 2.89 -65.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168883050.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.224 kcal (2) G-P(sol) polarization free energy of solvation -68.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds