Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46905 * 110.99935 * 2 1 4 4 C 1.50704 * 109.46803 * 293.95368 * 3 2 1 5 5 O 1.21282 * 120.00258 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99371 * 180.02562 * 4 3 2 7 7 C 1.37104 * 119.99694 * 180.02562 * 6 4 3 8 8 H 1.08002 * 119.99649 * 359.97438 * 7 6 4 9 9 C 1.38946 * 120.00084 * 179.97438 * 7 6 4 10 10 N 1.31417 * 119.99947 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00262 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47262 * 89.99801 * 11 9 7 13 13 H 1.48495 * 109.47421 * 210.00408 * 11 9 7 14 14 H 1.48503 * 109.47157 * 330.00318 * 11 9 7 15 15 C 1.46892 * 111.00098 * 123.95244 * 2 1 3 16 16 H 1.09000 * 110.89004 * 296.42232 * 15 2 1 17 17 C 1.55157 * 111.00753 * 172.49895 * 15 2 1 18 18 C 1.54325 * 102.94461 * 206.42565 * 17 15 2 19 19 N 1.47017 * 107.27186 * 22.19179 * 18 17 15 20 20 C 1.34776 * 125.64978 * 181.09743 * 19 18 17 21 21 O 1.21622 * 119.99772 * 179.97438 * 20 19 18 22 22 C 1.47170 * 120.00068 * 359.95663 * 20 19 18 23 23 C 1.38240 * 128.47642 * 179.70582 * 22 20 19 24 24 N 1.31240 * 111.88959 * 179.80901 * 23 22 20 25 25 N 1.27334 * 120.03868 * 0.53170 * 24 23 22 26 26 S 1.56641 * 109.73738 * 359.69214 * 25 24 23 27 27 C 1.47429 * 108.70252 * 1.05825 * 19 18 17 28 28 H 1.09000 * 109.47369 * 54.85415 * 1 2 3 29 29 H 1.08997 * 109.47233 * 294.85085 * 1 2 3 30 30 H 1.08997 * 109.47062 * 174.85065 * 1 2 3 31 31 H 1.09000 * 109.47217 * 53.95047 * 3 2 1 32 32 H 1.09001 * 109.47016 * 173.95739 * 3 2 1 33 33 H 0.96998 * 120.00193 * 359.97438 * 6 4 3 34 34 H 0.96998 * 119.99755 * 179.97438 * 10 9 7 35 35 H 1.09007 * 110.71967 * 324.78585 * 17 15 2 36 36 H 1.09002 * 110.72327 * 88.06048 * 17 15 2 37 37 H 1.09001 * 109.88143 * 262.77419 * 18 17 15 38 38 H 1.08998 * 110.00696 * 141.68075 * 18 17 15 39 39 H 1.08002 * 124.05832 * 359.97438 * 23 22 20 40 40 H 1.08998 * 110.36691 * 217.03151 * 27 19 18 41 41 H 1.09003 * 110.36467 * 94.71354 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2985 5 8 1.0046 1.4456 -2.1407 6 7 2.0188 3.3199 -1.5237 7 6 1.6922 3.9348 -2.7048 8 1 1.1292 3.3991 -3.4548 9 6 2.0855 5.2471 -2.9368 10 7 2.7701 5.8990 -2.0240 11 14 1.6411 6.0846 -4.5463 12 1 0.3288 6.7651 -4.4044 13 1 2.6835 7.0857 -4.8877 14 1 1.5577 5.0689 -5.6264 15 6 1.9954 -0.7659 1.1375 16 1 1.7116 -0.3028 2.0826 17 6 3.5354 -0.9253 1.0358 18 6 3.8006 -2.2279 1.8196 19 7 2.5447 -2.9920 1.8344 20 6 2.3559 -4.1816 2.4391 21 8 1.2691 -4.7248 2.3864 22 6 3.4651 -4.8233 3.1629 23 6 3.4659 -6.0263 3.8440 24 7 4.6390 -6.2901 4.3698 25 7 5.6013 -5.4686 4.2260 26 16 5.1250 -4.2387 3.3809 27 6 1.5255 -2.2408 1.0789 28 1 -0.3634 0.5916 -0.8403 29 1 -0.3633 0.4319 0.9325 30 1 -0.3633 -1.0235 -0.0922 31 1 1.5610 1.9274 0.8309 32 1 3.0797 1.3444 0.1082 33 1 2.5242 3.8011 -0.8499 34 1 3.0450 6.8150 -2.1862 35 1 3.8442 -1.0314 -0.0042 36 1 4.0423 -0.0825 1.5056 37 1 4.1028 -1.9916 2.8399 38 1 4.5813 -2.8074 1.3268 39 1 2.6052 -6.6729 3.9305 40 1 0.5488 -2.3469 1.5509 41 1 1.4881 -2.5863 0.0458 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189059562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = 3.362796 kcal Electronic energy + Delta-G solvation = -26381.727922 eV Core-core repulsion = 22424.176486 eV Total energy + Delta-G solvation = -3957.551436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93510 -41.28154 -40.27640 -38.96913 -36.81936 -35.75796 -33.38453 -33.22609 -32.03374 -30.52369 -29.01685 -28.48438 -26.95000 -25.62680 -24.10313 -23.40759 -21.46162 -20.94664 -20.72897 -20.16332 -19.78963 -18.40914 -17.99930 -17.53639 -17.21903 -16.82802 -16.55939 -16.24372 -16.01110 -15.75658 -15.51413 -15.23834 -15.09034 -14.83214 -14.27533 -14.17487 -13.86860 -13.68718 -13.66092 -13.42656 -13.18785 -12.99181 -12.93682 -12.59336 -12.40578 -12.31067 -12.11551 -11.94413 -11.84650 -11.48857 -11.41733 -11.21022 -11.13476 -10.89806 -10.24117 -9.95011 -9.91023 -9.23001 -8.42934 -5.90396 -1.38329 -0.27075 0.41638 0.84506 1.39893 1.44186 1.52393 1.56340 1.76178 2.11715 2.31147 2.76462 2.88811 3.18189 3.24855 3.44112 3.55818 3.57995 3.65408 4.03206 4.16128 4.20399 4.33763 4.41568 4.48511 4.55178 4.57929 4.62304 4.67571 4.71972 4.84788 4.93341 5.03425 5.18367 5.25465 5.45508 5.86806 6.06685 6.14369 6.21326 6.55650 6.65952 6.72463 7.18405 7.62888 8.19169 8.74275 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028883 B = 0.002038 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.203513 B =13734.017537 C =14446.748106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.523 5.523 3 C 0.059 3.941 4 C 0.442 3.558 5 O -0.615 6.615 6 N -0.575 5.575 7 C -0.328 4.328 8 H 0.077 0.923 9 C -0.013 4.013 10 N -0.920 5.920 11 Si 0.988 3.012 12 H -0.273 1.273 13 H -0.272 1.272 14 H -0.274 1.274 15 C 0.071 3.929 16 H 0.075 0.925 17 C -0.119 4.119 18 C 0.081 3.919 19 N -0.605 5.605 20 C 0.616 3.384 21 O -0.557 6.557 22 C -0.303 4.303 23 C 0.076 3.924 24 N -0.277 5.277 25 N -0.301 5.301 26 S 0.519 5.481 27 C 0.121 3.879 28 H 0.057 0.943 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.397 0.603 34 H 0.276 0.724 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.229 0.771 40 H 0.077 0.923 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.426 -15.335 14.320 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.248 5.248 3 C -0.072 4.072 4 C 0.229 3.771 5 O -0.501 6.501 6 N -0.213 5.213 7 C -0.458 4.458 8 H 0.095 0.905 9 C -0.213 4.213 10 N -0.561 5.561 11 Si 0.812 3.188 12 H -0.199 1.199 13 H -0.197 1.197 14 H -0.199 1.199 15 C -0.038 4.038 16 H 0.092 0.908 17 C -0.157 4.157 18 C -0.043 4.043 19 N -0.338 5.338 20 C 0.403 3.597 21 O -0.436 6.436 22 C -0.444 4.444 23 C -0.092 4.092 24 N -0.140 5.140 25 N -0.281 5.281 26 S 0.654 5.346 27 C -0.001 4.001 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.138 0.862 33 H 0.230 0.770 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.245 0.755 40 H 0.095 0.905 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.586 -15.930 13.854 22.433 hybrid contribution -1.913 0.676 -0.134 2.033 sum 5.673 -15.254 13.720 21.286 Atomic orbital electron populations 1.22439 0.86829 1.02552 1.00571 1.61520 1.08676 1.12584 1.41991 1.21746 1.02699 0.88868 0.93848 1.20817 0.83598 0.82162 0.90498 1.90480 1.45076 1.65379 1.49171 1.41925 1.50168 1.11654 1.17556 1.19608 1.34123 0.96287 0.95775 0.90452 1.25954 0.96449 0.96721 1.02127 1.69660 1.38226 1.12603 1.35592 0.84993 0.78132 0.77838 0.77790 1.19897 1.19689 1.19907 1.22831 0.96322 0.92191 0.92491 0.90769 1.22773 0.93784 0.96872 1.02262 1.22603 0.85698 0.93165 1.02805 1.48246 1.14723 1.19009 1.51825 1.16171 0.85629 0.79745 0.78127 1.90855 1.26320 1.63991 1.62468 1.27823 1.02047 1.02843 1.11724 1.24738 0.96705 0.94963 0.92763 1.70844 0.97757 1.24128 1.21240 1.78538 1.24955 1.05757 1.18885 1.82463 0.96393 1.22174 1.33531 1.22178 0.91496 0.89999 0.96468 0.92382 0.94903 0.90687 0.91275 0.86220 0.76951 0.91423 0.89406 0.86656 0.88152 0.88582 0.75521 0.90477 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 8.97 127.69 1.15 1.83 16 2 N -0.52 -14.12 4.40 -893.46 -3.93 -18.05 16 3 C 0.06 1.73 5.34 85.56 0.46 2.19 16 4 C 0.44 19.33 7.46 87.66 0.65 19.98 16 5 O -0.62 -31.94 13.92 -3.04 -0.04 -31.98 16 6 N -0.58 -27.68 5.29 -306.98 -1.62 -29.31 16 7 C -0.33 -17.90 9.68 84.04 0.81 -17.08 16 8 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 9 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 10 N -0.92 -47.81 13.05 21.66 0.28 -47.53 16 11 Si 0.99 41.82 29.55 68.60 2.03 43.85 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 13 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 15 C 0.07 1.28 2.71 46.31 0.13 1.41 16 16 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 17 C -0.12 -1.49 5.41 31.78 0.17 -1.32 16 18 C 0.08 0.80 5.26 86.73 0.46 1.26 16 19 N -0.61 -10.14 3.33 -815.96 -2.71 -12.86 16 20 C 0.62 12.31 7.84 86.59 0.68 12.98 16 21 O -0.56 -15.25 17.23 -4.10 -0.07 -15.32 16 22 C -0.30 -4.70 6.67 24.62 0.16 -4.54 16 23 C 0.08 1.22 11.55 84.78 0.98 2.20 16 24 N -0.28 -5.25 11.54 -57.87 -0.67 -5.92 16 25 N -0.30 -5.26 12.51 37.02 0.46 -4.80 16 26 S 0.52 5.51 19.63 -56.49 -1.11 4.40 16 27 C 0.12 2.38 5.28 86.85 0.46 2.83 16 28 H 0.06 2.17 5.81 -2.39 -0.01 2.16 16 29 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.92 7.15 -2.39 -0.02 1.90 16 31 H 0.07 1.79 8.12 -2.39 -0.02 1.77 16 32 H 0.12 2.82 6.82 -2.39 -0.02 2.80 16 33 H 0.40 17.95 7.90 -92.71 -0.73 17.22 16 34 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 35 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.12 0.93 7.88 -2.39 -0.02 0.91 16 37 H 0.10 0.53 7.02 -2.39 -0.02 0.51 16 38 H 0.10 0.66 7.16 -2.39 -0.02 0.64 16 39 H 0.23 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.08 1.61 7.93 -2.39 -0.02 1.60 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -72.87 355.33 -0.45 -73.32 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.36 Total: 22.65 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 6.57 Total: 21.54 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -8.19 Total: -118.47 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.11 Total: -47.30 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -1.11 Total: 4.40 kcal Total: -72.87 -0.45 -73.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189059562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.684 kcal (2) G-P(sol) polarization free energy of solvation -72.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds