Wall clock time and date at job start Sat Apr 11 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46906 * 110.99866 * 2 1 4 4 C 1.50701 * 109.47216 * 293.96117 * 3 2 1 5 5 O 1.21287 * 119.99903 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00067 * 180.02562 * 4 3 2 7 7 C 1.37096 * 120.00026 * 179.97438 * 6 4 3 8 8 H 1.08000 * 120.00371 * 359.97438 * 7 6 4 9 9 C 1.38953 * 119.99747 * 179.97438 * 7 6 4 10 10 N 1.31410 * 119.99646 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00223 * 0.02562 * 9 7 6 12 12 H 1.48508 * 109.46955 * 89.99563 * 11 9 7 13 13 H 1.48500 * 109.46976 * 209.99476 * 11 9 7 14 14 H 1.48499 * 109.46994 * 329.99650 * 11 9 7 15 15 C 1.46896 * 111.00456 * 123.95724 * 2 1 3 16 16 H 1.08997 * 110.88743 * 292.16305 * 15 2 1 17 17 C 1.55153 * 111.00497 * 56.04605 * 15 2 1 18 18 C 1.54323 * 103.10236 * 153.48851 * 17 15 2 19 19 N 1.47317 * 107.12157 * 338.02434 * 18 17 15 20 20 C 1.34776 * 125.62115 * 178.82310 * 19 18 17 21 21 O 1.21605 * 120.00586 * 179.86142 * 20 19 18 22 22 C 1.47454 * 119.99523 * 359.85489 * 20 19 18 23 23 C 1.37982 * 124.15133 * 180.02562 * 22 20 19 24 24 S 1.72102 * 104.02939 * 180.02562 * 23 22 20 25 25 N 1.56402 * 96.15901 * 359.97438 * 24 23 22 26 26 N 1.27421 * 109.87032 * 359.72978 * 25 24 23 27 27 C 1.47427 * 108.73481 * 358.69551 * 19 18 17 28 28 H 1.09000 * 109.46882 * 296.03933 * 1 2 3 29 29 H 1.08990 * 109.47623 * 56.04117 * 1 2 3 30 30 H 1.09000 * 109.46854 * 176.04985 * 1 2 3 31 31 H 1.09006 * 109.46837 * 53.95984 * 3 2 1 32 32 H 1.08998 * 109.47357 * 173.95832 * 3 2 1 33 33 H 0.97006 * 120.00032 * 359.97438 * 6 4 3 34 34 H 0.97001 * 119.99811 * 180.02562 * 10 9 7 35 35 H 1.09002 * 110.72030 * 271.94118 * 17 15 2 36 36 H 1.09003 * 110.72184 * 35.03769 * 17 15 2 37 37 H 1.09000 * 109.88167 * 97.31380 * 18 17 15 38 38 H 1.09003 * 109.88497 * 218.47738 * 18 17 15 39 39 H 1.07995 * 127.98598 * 359.96474 * 23 22 20 40 40 H 1.08996 * 110.37285 * 265.44500 * 27 19 18 41 41 H 1.09000 * 110.45726 * 143.17011 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6367 2.0473 -1.2984 5 8 1.0052 1.4455 -2.1410 6 7 2.0186 3.3200 -1.5236 7 6 1.6928 3.9346 -2.7050 8 1 1.1304 3.3987 -3.4553 9 6 2.0861 5.2469 -2.9370 10 7 1.7733 5.8362 -4.0691 11 14 3.0594 6.1735 -1.6395 12 1 4.5118 5.9605 -1.8642 13 1 2.7517 7.6234 -1.7315 14 1 2.6885 5.6733 -0.2914 15 6 1.9955 -0.7660 1.1375 16 1 1.7762 -0.2633 2.0794 17 6 1.4396 -2.2145 1.1375 18 6 2.5353 -3.0097 1.8784 19 7 3.7816 -2.2313 1.7740 20 6 4.9689 -2.5746 2.3116 21 8 5.9366 -1.8540 2.1593 22 6 5.0944 -3.8240 3.0846 23 6 6.2655 -4.2574 3.6715 24 16 5.8302 -5.7425 4.4243 25 7 4.3289 -5.7188 3.9866 26 7 4.0926 -4.6674 3.3066 27 6 3.5163 -1.0165 0.9819 28 1 -0.3633 0.4511 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3633 -1.0252 -0.0708 31 1 1.5611 1.9274 0.8310 32 1 3.0797 1.3445 0.1082 33 1 2.5241 3.8012 -0.8498 34 1 2.0482 6.7522 -4.2312 35 1 0.4944 -2.2649 1.6781 36 1 1.3193 -2.5815 0.1182 37 1 2.2611 -3.1305 2.9264 38 1 2.6642 -3.9863 1.4118 39 1 7.2324 -3.7764 3.6601 40 1 3.7680 -1.1839 -0.0653 41 1 4.0821 -0.1729 1.3771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191585013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:12 Heat of formation + Delta-G solvation = 36.528329 kcal Electronic energy + Delta-G solvation = -26589.835992 eV Core-core repulsion = 22633.722721 eV Total energy + Delta-G solvation = -3956.113271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56596 -40.03327 -38.83552 -37.80478 -35.59997 -33.88242 -32.65997 -31.68028 -31.09860 -29.31200 -28.03589 -27.45094 -25.23481 -24.72816 -23.13173 -22.47114 -20.86189 -20.30088 -19.36359 -18.95865 -18.23009 -17.04874 -16.82316 -16.54935 -16.21033 -15.84262 -15.38323 -15.10212 -14.92506 -14.53209 -14.37265 -13.99053 -13.62392 -13.31081 -13.16852 -13.09430 -12.88253 -12.69754 -12.54002 -12.40890 -12.06653 -11.80085 -11.48429 -11.38059 -11.12233 -11.03790 -10.85695 -10.73887 -10.58372 -10.56185 -10.52027 -10.39489 -9.96742 -9.52998 -8.93421 -8.59766 -8.17678 -8.02400 -6.30229 -3.81508 -0.42662 0.42404 1.01191 1.04750 2.53219 2.75971 3.03694 3.08609 3.16464 3.33871 3.73613 3.86641 4.09266 4.11434 4.24795 4.47734 4.49754 4.76948 4.81690 4.93580 5.11836 5.15863 5.23914 5.45370 5.50662 5.59539 5.64905 5.71920 5.80021 5.82909 5.84457 5.91337 5.97470 6.04854 6.47351 6.97043 7.07252 7.12207 7.24607 7.59093 7.68845 8.15362 8.60921 8.96135 9.43392 9.83998 10.82810 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.002202 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.319761 B =12711.978975 C =13667.339573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.507 5.507 3 C 0.039 3.961 4 C 0.454 3.546 5 O -0.559 6.559 6 N -0.591 5.591 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.881 5.881 11 Si 0.879 3.121 12 H -0.270 1.270 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.069 3.931 16 H 0.057 0.943 17 C -0.126 4.126 18 C 0.111 3.889 19 N -0.598 5.598 20 C 0.616 3.384 21 O -0.525 6.525 22 C -0.017 4.017 23 C -0.235 4.235 24 S 0.461 5.539 25 N -0.291 5.291 26 N -0.206 5.206 27 C 0.114 3.886 28 H 0.016 0.984 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.370 0.630 34 H 0.273 0.727 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.209 0.791 40 H 0.090 0.910 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.502 -21.787 21.311 31.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.231 5.231 3 C -0.092 4.092 4 C 0.239 3.761 5 O -0.440 6.440 6 N -0.230 5.230 7 C -0.432 4.432 8 H 0.138 0.862 9 C -0.162 4.162 10 N -0.521 5.521 11 Si 0.705 3.295 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.041 4.041 16 H 0.075 0.925 17 C -0.164 4.164 18 C -0.012 4.012 19 N -0.330 5.330 20 C 0.399 3.601 21 O -0.400 6.400 22 C -0.164 4.164 23 C -0.393 4.393 24 S 0.597 5.403 25 N -0.272 5.272 26 N -0.077 5.077 27 C -0.008 4.008 28 H 0.034 0.966 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.203 0.797 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.226 0.774 40 H 0.108 0.892 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.883 -23.404 20.755 32.030 hybrid contribution 1.055 2.681 1.062 3.070 sum 7.938 -20.723 21.817 31.120 Atomic orbital electron populations 1.22560 0.85898 1.02457 1.01636 1.61581 1.09117 1.12547 1.39842 1.21967 1.00928 0.89158 0.97189 1.19570 0.85157 0.82455 0.88886 1.90527 1.42679 1.64088 1.46743 1.42214 1.50977 1.11964 1.17869 1.19419 1.33828 0.96274 0.93714 0.86238 1.25039 0.97877 0.96518 0.96748 1.69621 1.45643 1.13618 1.23240 0.86683 0.80982 0.80459 0.81331 1.19557 1.20217 1.19531 1.22785 0.93706 0.94600 0.93021 0.92499 1.22782 0.97604 0.93674 1.02339 1.22240 0.82430 0.95090 1.01433 1.48235 1.09131 1.24054 1.51620 1.16200 0.82342 0.82795 0.78783 1.90871 1.36961 1.51686 1.60516 1.22601 0.89435 0.99495 1.04911 1.28902 1.05109 1.02882 1.02368 1.81579 1.05967 1.13241 1.39488 1.78691 1.13807 1.17801 1.16881 1.71703 1.27523 0.97909 1.10566 1.22355 0.95339 0.86445 0.96708 0.96578 0.88304 0.91638 0.93152 0.89199 0.79721 0.91629 0.89835 0.88940 0.90486 0.90282 0.77368 0.89202 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.93 60.06 0.54 0.86 16 2 N -0.51 -7.64 4.40 -233.75 -1.03 -8.67 16 3 C 0.04 0.64 5.36 -4.97 -0.03 0.61 16 4 C 0.45 10.11 7.47 -10.99 -0.08 10.03 16 5 O -0.56 -14.53 13.91 5.55 0.08 -14.45 16 6 N -0.59 -13.98 5.09 -10.96 -0.06 -14.03 16 7 C -0.30 -8.54 10.16 -14.93 -0.15 -8.69 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 9 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 10 N -0.88 -25.74 13.96 55.50 0.77 -24.97 16 11 Si 0.88 19.44 27.74 -169.99 -4.71 14.73 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.27 -5.43 6.52 56.52 0.37 -5.07 16 15 C 0.07 0.80 2.72 -65.57 -0.18 0.63 16 16 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 17 C -0.13 -1.22 5.08 -24.90 -0.13 -1.34 16 18 C 0.11 1.07 5.50 -2.90 -0.02 1.06 16 19 N -0.60 -6.98 3.33 -171.53 -0.57 -7.55 16 20 C 0.62 7.66 7.84 -12.51 -0.10 7.56 16 21 O -0.52 -7.90 17.05 5.27 0.09 -7.81 16 22 C -0.02 -0.17 6.76 -83.78 -0.57 -0.74 16 23 C -0.24 -1.60 11.21 30.64 0.34 -1.26 16 24 S 0.46 2.30 23.38 -107.50 -2.51 -0.22 16 25 N -0.29 -2.55 12.49 60.35 0.75 -1.80 16 26 N -0.21 -2.07 8.86 32.74 0.29 -1.78 16 27 C 0.11 1.41 5.61 -2.53 -0.01 1.39 16 28 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.10 1.82 5.82 -51.93 -0.30 1.52 16 30 H 0.06 0.82 6.99 -51.93 -0.36 0.45 16 31 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 32 H 0.09 1.32 6.95 -51.93 -0.36 0.96 16 33 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 34 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 35 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 37 H 0.08 0.71 7.55 -51.93 -0.39 0.32 16 38 H 0.08 0.76 7.71 -51.93 -0.40 0.36 16 39 H 0.21 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.03 7.71 -51.93 -0.40 0.63 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -34.66 354.07 -7.00 -41.66 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.96 Total: 8.41 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -0.48 Total: 11.14 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.16 Total: -58.80 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.17 Total: -22.26 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.73 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.51 Total: -0.22 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.66 -7.00 -41.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191585013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.190 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds