Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46906 * 110.99866 * 2 1 4 4 C 1.50701 * 109.47216 * 293.96117 * 3 2 1 5 5 O 1.21287 * 119.99903 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00067 * 180.02562 * 4 3 2 7 7 C 1.37096 * 120.00026 * 179.97438 * 6 4 3 8 8 H 1.08000 * 120.00371 * 359.97438 * 7 6 4 9 9 C 1.38953 * 119.99747 * 179.97438 * 7 6 4 10 10 N 1.31410 * 119.99646 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00223 * 0.02562 * 9 7 6 12 12 H 1.48508 * 109.46955 * 89.99563 * 11 9 7 13 13 H 1.48500 * 109.46976 * 209.99476 * 11 9 7 14 14 H 1.48499 * 109.46994 * 329.99650 * 11 9 7 15 15 C 1.46896 * 111.00456 * 123.95724 * 2 1 3 16 16 H 1.08997 * 110.88743 * 292.16305 * 15 2 1 17 17 C 1.55153 * 111.00497 * 56.04605 * 15 2 1 18 18 C 1.54323 * 103.10236 * 153.48851 * 17 15 2 19 19 N 1.47317 * 107.12157 * 338.02434 * 18 17 15 20 20 C 1.34776 * 125.62115 * 178.82310 * 19 18 17 21 21 O 1.21605 * 120.00586 * 179.86142 * 20 19 18 22 22 C 1.47454 * 119.99523 * 359.85489 * 20 19 18 23 23 C 1.37982 * 124.15133 * 180.02562 * 22 20 19 24 24 S 1.72102 * 104.02939 * 180.02562 * 23 22 20 25 25 N 1.56402 * 96.15901 * 359.97438 * 24 23 22 26 26 N 1.27421 * 109.87032 * 359.72978 * 25 24 23 27 27 C 1.47427 * 108.73481 * 358.69551 * 19 18 17 28 28 H 1.09000 * 109.46882 * 296.03933 * 1 2 3 29 29 H 1.08990 * 109.47623 * 56.04117 * 1 2 3 30 30 H 1.09000 * 109.46854 * 176.04985 * 1 2 3 31 31 H 1.09006 * 109.46837 * 53.95984 * 3 2 1 32 32 H 1.08998 * 109.47357 * 173.95832 * 3 2 1 33 33 H 0.97006 * 120.00032 * 359.97438 * 6 4 3 34 34 H 0.97001 * 119.99811 * 180.02562 * 10 9 7 35 35 H 1.09002 * 110.72030 * 271.94118 * 17 15 2 36 36 H 1.09003 * 110.72184 * 35.03769 * 17 15 2 37 37 H 1.09000 * 109.88167 * 97.31380 * 18 17 15 38 38 H 1.09003 * 109.88497 * 218.47738 * 18 17 15 39 39 H 1.07995 * 127.98598 * 359.96474 * 23 22 20 40 40 H 1.08996 * 110.37285 * 265.44500 * 27 19 18 41 41 H 1.09000 * 110.45726 * 143.17011 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6367 2.0473 -1.2984 5 8 1.0052 1.4455 -2.1410 6 7 2.0186 3.3200 -1.5236 7 6 1.6928 3.9346 -2.7050 8 1 1.1304 3.3987 -3.4553 9 6 2.0861 5.2469 -2.9370 10 7 1.7733 5.8362 -4.0691 11 14 3.0594 6.1735 -1.6395 12 1 4.5118 5.9605 -1.8642 13 1 2.7517 7.6234 -1.7315 14 1 2.6885 5.6733 -0.2914 15 6 1.9955 -0.7660 1.1375 16 1 1.7762 -0.2633 2.0794 17 6 1.4396 -2.2145 1.1375 18 6 2.5353 -3.0097 1.8784 19 7 3.7816 -2.2313 1.7740 20 6 4.9689 -2.5746 2.3116 21 8 5.9366 -1.8540 2.1593 22 6 5.0944 -3.8240 3.0846 23 6 6.2655 -4.2574 3.6715 24 16 5.8302 -5.7425 4.4243 25 7 4.3289 -5.7188 3.9866 26 7 4.0926 -4.6674 3.3066 27 6 3.5163 -1.0165 0.9819 28 1 -0.3633 0.4511 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3633 -1.0252 -0.0708 31 1 1.5611 1.9274 0.8310 32 1 3.0797 1.3445 0.1082 33 1 2.5241 3.8012 -0.8498 34 1 2.0482 6.7522 -4.2312 35 1 0.4944 -2.2649 1.6781 36 1 1.3193 -2.5815 0.1182 37 1 2.2611 -3.1305 2.9264 38 1 2.6642 -3.9863 1.4118 39 1 7.2324 -3.7764 3.6601 40 1 3.7680 -1.1839 -0.0653 41 1 4.0821 -0.1729 1.3771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191585013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = 8.051496 kcal Electronic energy + Delta-G solvation = -26591.070840 eV Core-core repulsion = 22633.722721 eV Total energy + Delta-G solvation = -3957.348119 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.23972 -40.98436 -40.31267 -39.01998 -36.81935 -35.82263 -33.74275 -33.32592 -32.02985 -30.21966 -29.44090 -28.08895 -26.67202 -25.96020 -24.36304 -23.24681 -21.52738 -21.38241 -21.14240 -20.18632 -19.70155 -18.00378 -17.80829 -17.34394 -17.24134 -16.92702 -16.77271 -16.23756 -16.08943 -15.81034 -15.56843 -15.37060 -14.86858 -14.66697 -14.37857 -14.24012 -14.05989 -13.90152 -13.60107 -13.46172 -13.14405 -13.05604 -12.81518 -12.57437 -12.41868 -12.39060 -11.97049 -11.89988 -11.87692 -11.51528 -11.45786 -11.23852 -11.18304 -10.89252 -10.35763 -10.22014 -9.84104 -9.25731 -8.40213 -6.00344 -0.95143 -0.06567 0.28932 0.53067 1.30175 1.35828 1.43933 1.69379 1.92710 1.97102 2.23263 2.55974 2.71989 3.15042 3.19569 3.35535 3.62557 3.64444 3.76199 4.04340 4.10100 4.25819 4.29958 4.33480 4.36161 4.43256 4.58968 4.61135 4.72806 4.83737 4.88867 4.95709 5.09558 5.17071 5.28260 5.54233 5.87970 5.99176 6.15282 6.21939 6.40502 6.60947 6.81768 6.90098 7.41446 7.98574 8.77331 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.002202 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.319761 B =12711.978975 C =13667.339573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.527 5.527 3 C 0.051 3.949 4 C 0.454 3.546 5 O -0.602 6.602 6 N -0.594 5.594 7 C -0.324 4.324 8 H 0.057 0.943 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.962 3.038 12 H -0.259 1.259 13 H -0.275 1.275 14 H -0.232 1.232 15 C 0.076 3.924 16 H 0.076 0.924 17 C -0.118 4.118 18 C 0.118 3.882 19 N -0.599 5.599 20 C 0.612 3.388 21 O -0.561 6.561 22 C -0.043 4.043 23 C -0.238 4.238 24 S 0.565 5.435 25 N -0.331 5.331 26 N -0.225 5.225 27 C 0.113 3.887 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.388 0.612 34 H 0.278 0.722 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.226 0.774 40 H 0.071 0.929 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.065 -22.933 25.584 35.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.252 5.252 3 C -0.080 4.080 4 C 0.241 3.759 5 O -0.486 6.486 6 N -0.236 5.236 7 C -0.453 4.453 8 H 0.075 0.925 9 C -0.214 4.214 10 N -0.575 5.575 11 Si 0.782 3.218 12 H -0.184 1.184 13 H -0.200 1.200 14 H -0.155 1.155 15 C -0.033 4.033 16 H 0.093 0.907 17 C -0.156 4.156 18 C -0.004 4.004 19 N -0.331 5.331 20 C 0.397 3.603 21 O -0.439 6.439 22 C -0.191 4.191 23 C -0.394 4.394 24 S 0.700 5.300 25 N -0.311 5.311 26 N -0.094 5.094 27 C -0.009 4.009 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.224 0.776 34 H 0.088 0.912 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.243 0.757 40 H 0.089 0.911 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.417 -24.593 25.053 36.102 hybrid contribution 0.588 2.807 -0.288 2.882 sum 9.005 -21.786 24.765 34.191 Atomic orbital electron populations 1.22432 0.85768 1.03186 1.00634 1.61476 1.09439 1.12034 1.42261 1.21869 1.02480 0.89819 0.93859 1.20786 0.82939 0.81739 0.90387 1.90518 1.44054 1.65032 1.48958 1.42055 1.51889 1.12682 1.16948 1.18989 1.34674 0.96974 0.94695 0.92478 1.26085 0.98713 0.97034 0.99609 1.69802 1.47279 1.14369 1.26085 0.85400 0.78996 0.78212 0.79150 1.18377 1.20007 1.15500 1.22773 0.93025 0.95248 0.92266 0.90660 1.22780 0.98569 0.92073 1.02223 1.22263 0.81458 0.94747 1.01953 1.48318 1.09707 1.23941 1.51140 1.16541 0.81914 0.83295 0.78528 1.90836 1.37987 1.53056 1.62030 1.22370 0.90908 0.99334 1.06497 1.29267 1.05050 1.03828 1.01295 1.81221 1.02465 1.10219 1.36060 1.78363 1.17031 1.17913 1.17838 1.71731 1.28052 0.98260 1.11356 1.22258 0.95938 0.86920 0.95818 0.94466 0.92736 0.89602 0.90133 0.86988 0.77647 0.91215 0.87478 0.89916 0.89534 0.90308 0.75682 0.91118 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 8.93 127.69 1.14 1.91 16 2 N -0.53 -15.13 4.40 -893.45 -3.93 -19.06 16 3 C 0.05 1.57 5.36 85.56 0.46 2.03 16 4 C 0.45 20.42 7.47 87.66 0.66 21.08 16 5 O -0.60 -32.82 13.91 -3.05 -0.04 -32.86 16 6 N -0.59 -28.18 5.09 -306.99 -1.56 -29.75 16 7 C -0.32 -19.06 10.16 84.04 0.85 -18.20 16 8 H 0.06 3.99 7.39 -2.91 -0.02 3.96 16 9 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 10 N -0.93 -56.77 13.96 21.66 0.30 -56.47 16 11 Si 0.96 39.38 27.74 68.60 1.90 41.29 16 12 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 13 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 14 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 15 C 0.08 1.60 2.72 46.31 0.13 1.73 16 16 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 17 C -0.12 -2.02 5.08 31.78 0.16 -1.86 16 18 C 0.12 2.08 5.50 86.67 0.48 2.55 16 19 N -0.60 -13.35 3.33 -814.86 -2.72 -16.07 16 20 C 0.61 14.81 7.84 86.67 0.68 15.49 16 21 O -0.56 -16.70 17.05 -4.05 -0.07 -16.77 16 22 C -0.04 -0.81 6.76 41.36 0.28 -0.53 16 23 C -0.24 -2.69 11.21 67.76 0.76 -1.93 16 24 S 0.57 3.89 23.38 -56.49 -1.32 2.57 16 25 N -0.33 -5.09 12.49 37.02 0.46 -4.63 16 26 N -0.22 -4.16 8.86 -50.34 -0.45 -4.61 16 27 C 0.11 2.67 5.61 86.86 0.49 3.16 16 28 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 2.05 5.82 -2.39 -0.01 2.03 16 30 H 0.09 2.00 6.99 -2.39 -0.02 1.99 16 31 H 0.08 2.06 8.12 -2.38 -0.02 2.04 16 32 H 0.11 3.00 6.95 -2.39 -0.02 2.99 16 33 H 0.39 15.39 5.76 -92.70 -0.53 14.86 16 34 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.11 1.36 8.10 -2.39 -0.02 1.34 16 36 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 37 H 0.09 1.40 7.55 -2.39 -0.02 1.38 16 38 H 0.08 1.42 7.71 -2.39 -0.02 1.40 16 39 H 0.23 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 1.90 7.71 -2.39 -0.02 1.88 16 Total: -1.00 -82.36 354.07 -0.38 -82.74 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.49 Total: 28.63 kcal Atomic # 6 Polarization: 18.44 SS G_CDS: 6.55 Total: 24.99 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -7.89 Total: -130.58 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.11 Total: -49.63 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 1.90 Total: 41.29 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -1.32 Total: 2.57 kcal Total: -82.36 -0.38 -82.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191585013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.794 kcal (2) G-P(sol) polarization free energy of solvation -82.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds