Wall clock time and date at job start Sat Apr 11 2020 05:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00293 * 2 1 4 4 H 1.48507 * 109.47173 * 270.00184 * 3 2 1 5 5 H 1.48507 * 109.46942 * 29.99931 * 3 2 1 6 6 H 1.48496 * 109.47457 * 150.00087 * 3 2 1 7 7 C 1.37882 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00059 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99845 * 0.02562 * 7 2 1 10 10 O 1.42096 * 106.40166 * 66.45487 * 9 7 2 11 11 O 1.42104 * 106.39852 * 293.53749 * 9 7 2 12 12 N 1.65601 * 107.21465 * 179.97438 * 9 7 2 13 13 C 1.46494 * 120.00344 * 65.00123 * 12 9 7 14 14 C 1.52992 * 109.47379 * 164.85997 * 13 12 9 15 15 C 1.53003 * 109.61719 * 60.87253 * 14 13 12 16 16 C 1.50707 * 109.46526 * 59.77606 * 15 14 13 17 17 C 1.38236 * 120.00171 * 269.72290 * 16 15 14 18 18 C 1.38233 * 120.00239 * 179.79105 * 17 16 15 19 19 C 1.38242 * 119.99760 * 0.44820 * 18 17 16 20 20 C 1.38243 * 119.99784 * 359.80939 * 19 18 17 21 21 C 1.38233 * 119.99909 * 359.97438 * 20 19 18 22 22 C 1.53200 * 109.54306 * 181.08845 * 14 13 12 23 23 C 1.53094 * 109.14923 * 62.89851 * 22 14 13 24 24 O 1.42897 * 109.42828 * 57.60409 * 23 22 14 25 25 C 1.42906 * 114.09580 * 298.84138 * 24 23 22 26 26 C 1.53089 * 109.41784 * 61.15474 * 25 24 23 27 27 H 0.96997 * 119.99634 * 359.97438 * 1 2 3 28 28 H 0.97004 * 119.99800 * 244.99641 * 12 9 7 29 29 H 1.09002 * 109.47471 * 44.85807 * 13 12 9 30 30 H 1.09002 * 109.47180 * 284.86375 * 13 12 9 31 31 H 1.08996 * 109.47303 * 179.77671 * 15 14 13 32 32 H 1.09004 * 109.46917 * 299.78169 * 15 14 13 33 33 H 1.08001 * 119.99678 * 0.02562 * 17 16 15 34 34 H 1.07993 * 120.00479 * 180.27614 * 18 17 16 35 35 H 1.08000 * 120.00093 * 179.83295 * 19 18 17 36 36 H 1.07999 * 119.99973 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.99594 * 180.02562 * 21 20 19 38 38 H 1.08999 * 109.54322 * 302.99101 * 22 14 13 39 39 H 1.09003 * 109.52639 * 182.79290 * 22 14 13 40 40 H 1.09003 * 109.47900 * 297.61193 * 23 22 14 41 41 H 1.09002 * 109.47841 * 177.59745 * 23 22 14 42 42 H 1.09002 * 109.48141 * 181.13749 * 25 24 23 43 43 H 1.09003 * 109.47575 * 301.15716 * 25 24 23 44 44 H 1.08996 * 109.52242 * 62.29627 * 26 25 24 45 45 H 1.08995 * 109.52358 * 182.48960 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2494 11 8 0.4509 -2.7950 1.2501 12 7 2.2483 -3.9354 0.0005 13 6 3.1394 -4.1089 1.1503 14 6 3.8021 -5.4860 1.0788 15 6 4.6302 -5.5915 -0.2034 16 6 5.6901 -4.5201 -0.2064 17 6 5.4215 -3.2837 -0.7630 18 6 6.3921 -2.2995 -0.7619 19 6 7.6347 -2.5548 -0.2123 20 6 7.9050 -3.7931 0.3396 21 6 6.9328 -4.7757 0.3424 22 6 4.7135 -5.6798 2.2948 23 6 3.8645 -5.6514 3.5684 24 8 2.8626 -6.6676 3.4946 25 6 1.9522 -6.5112 2.4041 26 6 2.7242 -6.5743 1.0836 27 1 -0.4849 0.8400 0.0004 28 1 2.3172 -4.5325 -0.7608 29 1 2.5627 -4.0306 2.0720 30 1 3.9069 -3.3350 1.1352 31 1 5.1044 -6.5718 -0.2500 32 1 3.9794 -5.4612 -1.0680 33 1 4.4519 -3.0853 -1.1955 34 1 6.1808 -1.3321 -1.1928 35 1 8.3940 -1.7868 -0.2138 36 1 8.8756 -3.9925 0.7693 37 1 7.1440 -5.7430 0.7740 38 1 5.4501 -4.8771 2.3301 39 1 5.2235 -6.6402 2.2185 40 1 3.3869 -4.6763 3.6652 41 1 4.5018 -5.8314 4.4342 42 1 1.2120 -7.3108 2.4310 43 1 1.4494 -5.5475 2.4858 44 1 3.1940 -7.5527 0.9828 45 1 2.0382 -6.4111 0.2525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193000971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:43 Heat of formation + Delta-G solvation = -126.327129 kcal Electronic energy + Delta-G solvation = -29330.294042 eV Core-core repulsion = 25438.366421 eV Total energy + Delta-G solvation = -3891.927621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.48864 -38.75865 -36.14916 -35.20180 -33.96495 -33.19111 -32.83672 -31.43477 -30.98849 -30.67821 -27.33093 -26.15248 -25.48448 -23.58133 -23.15173 -22.28193 -20.90331 -19.10093 -18.57152 -17.53222 -16.64061 -16.37449 -15.96581 -15.85386 -15.41970 -15.10153 -14.99245 -14.82411 -14.74263 -14.36348 -13.92763 -13.65722 -13.48372 -13.28255 -13.00782 -12.69300 -12.49413 -12.17265 -12.04223 -11.92869 -11.74679 -11.32465 -11.23942 -11.20221 -11.06902 -11.05455 -10.81099 -10.62422 -10.45207 -10.31444 -10.22746 -10.20048 -9.95387 -9.35074 -9.26294 -9.00864 -8.75045 -8.55304 -8.43319 -6.71640 -5.33187 1.46494 1.53773 2.33023 3.04413 3.11818 3.17679 3.88791 4.01248 4.04582 4.56120 4.62733 4.65256 4.77497 4.86815 5.01703 5.04542 5.11316 5.14038 5.24706 5.30046 5.36689 5.43498 5.61846 5.64398 5.68243 5.74548 5.78527 5.79658 5.86992 5.88219 5.99068 6.01469 6.06486 6.14416 6.17235 6.22518 6.31065 6.40781 6.50816 6.57336 6.68765 6.77947 6.84336 7.14482 7.31104 7.32050 7.87411 7.96747 8.88046 10.22623 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009671 B = 0.005844 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.455080 B = 4789.787647 C = 6661.084652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.134 3.866 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.019 5.019 8 H 0.103 0.897 9 S 2.714 3.286 10 O -1.008 7.008 11 O -1.008 7.008 12 N -1.135 6.135 13 C 0.130 3.870 14 C -0.059 4.059 15 C -0.070 4.070 16 C -0.077 4.077 17 C -0.106 4.106 18 C -0.116 4.116 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.119 4.119 22 C -0.142 4.142 23 C 0.054 3.946 24 O -0.385 6.385 25 C 0.052 3.948 26 C -0.142 4.142 27 H 0.290 0.710 28 H 0.400 0.600 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.852 -10.059 1.947 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.084 4.084 3 Si 0.740 3.260 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.152 5.152 8 H 0.121 0.879 9 S 2.814 3.186 10 O -0.999 6.999 11 O -0.997 6.997 12 N -0.890 5.890 13 C 0.004 3.996 14 C -0.061 4.061 15 C -0.108 4.108 16 C -0.077 4.077 17 C -0.124 4.124 18 C -0.134 4.134 19 C -0.145 4.145 20 C -0.144 4.144 21 C -0.137 4.137 22 C -0.181 4.181 23 C -0.023 4.023 24 O -0.304 6.304 25 C -0.024 4.024 26 C -0.180 4.180 27 H 0.101 0.899 28 H 0.232 0.768 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.690 -10.147 2.257 16.404 hybrid contribution 1.117 1.363 -0.592 1.859 sum 13.808 -8.784 1.665 16.449 Atomic orbital electron populations 1.69893 1.06788 1.30689 1.40155 1.24717 0.94398 1.00730 0.88516 0.86228 0.80294 0.80302 0.79173 1.19204 1.19996 1.18588 1.30542 1.06080 1.11791 1.66793 0.87902 1.00412 0.72112 0.73313 0.72808 1.93376 1.73166 1.87691 1.45642 1.93355 1.72893 1.87530 1.45965 1.56017 1.55695 1.50982 1.26341 1.21257 0.93380 0.95574 0.89437 1.20754 0.94962 0.95512 0.94856 1.20669 0.95436 0.96863 0.97804 1.19802 0.94567 0.95275 0.98047 1.21334 0.99706 0.92672 0.98643 1.21232 0.93423 0.99413 0.99364 1.21113 0.97089 0.96992 0.99329 1.21047 0.99030 0.93836 1.00500 1.20983 0.93164 0.99200 1.00370 1.22279 0.98425 1.02930 0.94433 1.22658 0.90083 0.92072 0.97463 1.87876 1.43141 1.50094 1.49291 1.22688 0.91460 1.02805 0.85449 1.22203 0.98224 0.98358 0.99190 0.89916 0.76846 0.90723 0.91646 0.90906 0.90457 0.85057 0.86041 0.86612 0.86628 0.86487 0.90169 0.90963 0.92426 0.89157 0.89069 0.91588 0.91196 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.61 13.19 55.43 0.73 -23.88 16 2 C 0.13 3.68 5.46 -17.82 -0.10 3.58 16 3 Si 0.92 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 7 C -1.02 -27.04 9.72 30.60 0.30 -26.74 16 8 H 0.10 2.48 7.81 -52.49 -0.41 2.07 16 9 S 2.71 69.23 5.02 -107.50 -0.54 68.69 16 10 O -1.01 -28.79 18.02 -57.17 -1.03 -29.82 16 11 O -1.01 -28.61 17.49 -57.17 -1.00 -29.61 16 12 N -1.13 -20.82 4.86 -10.62 -0.05 -20.87 16 13 C 0.13 2.12 4.01 -4.05 -0.02 2.10 16 14 C -0.06 -0.74 0.31 -154.31 -0.05 -0.79 16 15 C -0.07 -0.80 4.30 -27.88 -0.12 -0.92 16 16 C -0.08 -0.95 4.02 -104.62 -0.42 -1.37 16 17 C -0.11 -1.50 7.89 -39.58 -0.31 -1.82 16 18 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 19 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 20 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 21 C -0.12 -1.31 7.98 -39.59 -0.32 -1.63 16 22 C -0.14 -1.60 4.23 -26.58 -0.11 -1.71 16 23 C 0.05 0.66 6.57 37.21 0.24 0.91 16 24 O -0.39 -5.40 10.77 -35.23 -0.38 -5.78 16 25 C 0.05 0.72 6.57 37.20 0.24 0.96 16 26 C -0.14 -1.73 4.79 -26.59 -0.13 -1.85 16 27 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.40 6.29 6.51 -34.47 -0.22 6.07 16 29 H 0.07 1.32 4.62 -51.93 -0.24 1.08 16 30 H 0.07 1.08 6.14 -51.93 -0.32 0.76 16 31 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.08 0.88 6.61 -51.93 -0.34 0.54 16 33 H 0.13 2.02 7.61 -52.49 -0.40 1.62 16 34 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.07 8.03 -52.48 -0.42 0.64 16 38 H 0.08 0.89 6.43 -51.93 -0.33 0.56 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.77 6.58 -51.93 -0.34 0.43 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.05 6.62 -51.93 -0.34 0.71 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.97 7.09 -51.93 -0.37 0.60 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -34.49 363.36 -10.05 -44.54 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.26 Total: 10.94 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: -1.98 Total: -34.92 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.68 Total: -44.75 kcal Atomic # 8 Polarization: -62.80 SS G_CDS: -2.41 Total: -65.21 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 69.23 SS G_CDS: -0.54 Total: 68.69 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.49 -10.05 -44.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193000971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.791 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds