Wall clock time and date at job start Sat Apr 11 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00293 * 2 1 4 4 H 1.48507 * 109.47173 * 270.00184 * 3 2 1 5 5 H 1.48507 * 109.46942 * 29.99931 * 3 2 1 6 6 H 1.48496 * 109.47457 * 150.00087 * 3 2 1 7 7 C 1.37882 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00059 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99845 * 0.02562 * 7 2 1 10 10 O 1.42096 * 106.40166 * 66.45487 * 9 7 2 11 11 O 1.42104 * 106.39852 * 293.53749 * 9 7 2 12 12 N 1.65601 * 107.21465 * 179.97438 * 9 7 2 13 13 C 1.46494 * 120.00344 * 65.00123 * 12 9 7 14 14 C 1.52992 * 109.47379 * 164.85997 * 13 12 9 15 15 C 1.53003 * 109.61719 * 60.87253 * 14 13 12 16 16 C 1.50707 * 109.46526 * 59.77606 * 15 14 13 17 17 C 1.38236 * 120.00171 * 269.72290 * 16 15 14 18 18 C 1.38233 * 120.00239 * 179.79105 * 17 16 15 19 19 C 1.38242 * 119.99760 * 0.44820 * 18 17 16 20 20 C 1.38243 * 119.99784 * 359.80939 * 19 18 17 21 21 C 1.38233 * 119.99909 * 359.97438 * 20 19 18 22 22 C 1.53200 * 109.54306 * 181.08845 * 14 13 12 23 23 C 1.53094 * 109.14923 * 62.89851 * 22 14 13 24 24 O 1.42897 * 109.42828 * 57.60409 * 23 22 14 25 25 C 1.42906 * 114.09580 * 298.84138 * 24 23 22 26 26 C 1.53089 * 109.41784 * 61.15474 * 25 24 23 27 27 H 0.96997 * 119.99634 * 359.97438 * 1 2 3 28 28 H 0.97004 * 119.99800 * 244.99641 * 12 9 7 29 29 H 1.09002 * 109.47471 * 44.85807 * 13 12 9 30 30 H 1.09002 * 109.47180 * 284.86375 * 13 12 9 31 31 H 1.08996 * 109.47303 * 179.77671 * 15 14 13 32 32 H 1.09004 * 109.46917 * 299.78169 * 15 14 13 33 33 H 1.08001 * 119.99678 * 0.02562 * 17 16 15 34 34 H 1.07993 * 120.00479 * 180.27614 * 18 17 16 35 35 H 1.08000 * 120.00093 * 179.83295 * 19 18 17 36 36 H 1.07999 * 119.99973 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.99594 * 180.02562 * 21 20 19 38 38 H 1.08999 * 109.54322 * 302.99101 * 22 14 13 39 39 H 1.09003 * 109.52639 * 182.79290 * 22 14 13 40 40 H 1.09003 * 109.47900 * 297.61193 * 23 22 14 41 41 H 1.09002 * 109.47841 * 177.59745 * 23 22 14 42 42 H 1.09002 * 109.48141 * 181.13749 * 25 24 23 43 43 H 1.09003 * 109.47575 * 301.15716 * 25 24 23 44 44 H 1.08996 * 109.52242 * 62.29627 * 26 25 24 45 45 H 1.08995 * 109.52358 * 182.48960 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2494 11 8 0.4509 -2.7950 1.2501 12 7 2.2483 -3.9354 0.0005 13 6 3.1394 -4.1089 1.1503 14 6 3.8021 -5.4860 1.0788 15 6 4.6302 -5.5915 -0.2034 16 6 5.6901 -4.5201 -0.2064 17 6 5.4215 -3.2837 -0.7630 18 6 6.3921 -2.2995 -0.7619 19 6 7.6347 -2.5548 -0.2123 20 6 7.9050 -3.7931 0.3396 21 6 6.9328 -4.7757 0.3424 22 6 4.7135 -5.6798 2.2948 23 6 3.8645 -5.6514 3.5684 24 8 2.8626 -6.6676 3.4946 25 6 1.9522 -6.5112 2.4041 26 6 2.7242 -6.5743 1.0836 27 1 -0.4849 0.8400 0.0004 28 1 2.3172 -4.5325 -0.7608 29 1 2.5627 -4.0306 2.0720 30 1 3.9069 -3.3350 1.1352 31 1 5.1044 -6.5718 -0.2500 32 1 3.9794 -5.4612 -1.0680 33 1 4.4519 -3.0853 -1.1955 34 1 6.1808 -1.3321 -1.1928 35 1 8.3940 -1.7868 -0.2138 36 1 8.8756 -3.9925 0.7693 37 1 7.1440 -5.7430 0.7740 38 1 5.4501 -4.8771 2.3301 39 1 5.2235 -6.6402 2.2185 40 1 3.3869 -4.6763 3.6652 41 1 4.5018 -5.8314 4.4342 42 1 1.2120 -7.3108 2.4310 43 1 1.4494 -5.5475 2.4858 44 1 3.1940 -7.5527 0.9828 45 1 2.0382 -6.4111 0.2525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193000971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:42 Heat of formation + Delta-G solvation = -151.256014 kcal Electronic energy + Delta-G solvation = -29331.375040 eV Core-core repulsion = 25438.366421 eV Total energy + Delta-G solvation = -3893.008619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.51350 -39.70061 -37.46121 -37.21253 -36.15191 -35.21590 -34.24746 -32.41720 -31.97445 -31.60115 -28.31318 -28.23919 -26.81843 -24.57369 -24.14374 -23.21507 -21.82772 -21.06483 -19.75853 -19.38922 -18.25442 -17.62121 -17.28714 -16.92585 -16.86053 -16.58878 -16.14322 -16.00050 -15.93071 -15.72596 -15.44199 -15.34997 -14.64722 -14.27975 -14.10734 -14.03173 -13.64538 -13.54462 -13.29613 -13.16872 -13.04301 -12.97905 -12.73734 -12.62309 -12.51966 -12.41547 -12.34224 -12.16031 -12.00255 -11.85151 -11.71795 -11.27061 -11.24483 -11.05899 -10.99414 -10.39504 -10.12778 -9.67020 -9.44107 -8.77040 -7.48613 0.35568 0.55581 0.61326 1.30541 1.30882 1.46568 2.17964 2.56677 2.95746 2.99777 3.01655 3.59990 3.65237 3.70162 3.85514 4.08668 4.12969 4.18471 4.20498 4.28246 4.35386 4.36804 4.42682 4.54003 4.64419 4.67800 4.71098 4.74693 4.78717 4.83849 4.90407 4.94735 5.00428 5.06194 5.10105 5.18270 5.25469 5.27637 5.33236 5.34622 5.41352 5.68823 5.75531 5.85938 5.90183 6.24705 6.28731 6.39033 6.77851 8.19445 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009671 B = 0.005844 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.455080 B = 4789.787647 C = 6661.084652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.982 3.018 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.247 1.247 7 C -1.034 5.034 8 H 0.119 0.881 9 S 2.721 3.279 10 O -1.047 7.047 11 O -1.045 7.045 12 N -1.113 6.113 13 C 0.128 3.872 14 C -0.052 4.052 15 C -0.068 4.068 16 C -0.082 4.082 17 C -0.132 4.132 18 C -0.140 4.140 19 C -0.132 4.132 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.134 4.134 23 C 0.046 3.954 24 O -0.393 6.393 25 C 0.049 3.951 26 C -0.140 4.140 27 H 0.298 0.702 28 H 0.413 0.587 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.035 0.965 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.031 0.969 44 H 0.098 0.902 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.424 -11.310 2.432 20.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.801 3.199 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.170 1.170 7 C -1.168 5.168 8 H 0.138 0.862 9 S 2.821 3.179 10 O -1.037 7.037 11 O -1.035 7.035 12 N -0.874 5.874 13 C 0.002 3.998 14 C -0.053 4.053 15 C -0.105 4.105 16 C -0.082 4.082 17 C -0.150 4.150 18 C -0.158 4.158 19 C -0.150 4.150 20 C -0.141 4.141 21 C -0.132 4.132 22 C -0.172 4.172 23 C -0.030 4.030 24 O -0.312 6.312 25 C -0.027 4.027 26 C -0.178 4.178 27 H 0.108 0.892 28 H 0.249 0.751 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.089 0.911 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.054 0.946 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.049 0.951 44 H 0.117 0.883 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.257 -11.419 2.732 20.053 hybrid contribution 0.045 1.685 -0.706 1.828 sum 16.301 -9.734 2.026 19.094 Atomic orbital electron populations 1.69989 1.08755 1.32223 1.41690 1.25942 0.95266 1.05202 0.87614 0.85239 0.79333 0.75252 0.80108 1.17815 1.18795 1.17023 1.30874 1.07074 1.12494 1.66352 0.86240 0.99821 0.72604 0.74040 0.71397 1.93311 1.74999 1.88470 1.46901 1.93303 1.74620 1.88277 1.47257 1.55295 1.54819 1.49461 1.27784 1.21421 0.92524 0.98520 0.87354 1.20719 0.95273 0.92719 0.96614 1.20691 0.95101 0.98140 0.96560 1.19896 0.95627 0.94591 0.98053 1.21300 0.99123 0.94240 1.00385 1.21336 0.94535 0.99275 1.00621 1.21369 0.96582 0.98226 0.98828 1.21434 1.00238 0.93093 0.99378 1.21301 0.92191 1.00426 0.99288 1.22251 0.97827 1.04502 0.92610 1.22832 0.90080 0.90783 0.99330 1.87863 1.43461 1.50415 1.49478 1.22697 0.92033 1.01497 0.86504 1.22217 0.98024 0.99614 0.97913 0.89194 0.75121 0.92723 0.91996 0.87827 0.91081 0.87437 0.86756 0.84833 0.83703 0.83592 0.89714 0.88226 0.94647 0.86731 0.87674 0.95089 0.88321 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.80 13.19 21.45 0.28 -53.51 16 2 C 0.07 4.05 5.46 84.66 0.46 4.51 16 3 Si 0.98 41.46 29.54 68.60 2.03 43.48 16 4 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 6 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 7 C -1.03 -56.48 9.72 67.74 0.66 -55.82 16 8 H 0.12 5.89 7.81 -2.91 -0.02 5.87 16 9 S 2.72 145.15 5.02 -56.49 -0.28 144.87 16 10 O -1.05 -62.50 18.02 -128.00 -2.31 -64.81 16 11 O -1.04 -62.51 17.49 -128.00 -2.24 -64.75 16 12 N -1.11 -42.23 4.86 -187.51 -0.91 -43.14 16 13 C 0.13 4.21 4.01 86.38 0.35 4.56 16 14 C -0.05 -1.19 0.31 -52.06 -0.02 -1.21 16 15 C -0.07 -1.35 4.30 29.85 0.13 -1.22 16 16 C -0.08 -1.84 4.02 -19.86 -0.08 -1.92 16 17 C -0.13 -3.73 7.89 22.27 0.18 -3.56 16 18 C -0.14 -3.74 10.05 22.27 0.22 -3.51 16 19 C -0.13 -2.83 10.05 22.27 0.22 -2.61 16 20 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 21 C -0.11 -2.06 7.98 22.27 0.18 -1.88 16 22 C -0.13 -2.58 4.23 30.69 0.13 -2.45 16 23 C 0.05 1.06 6.57 72.01 0.47 1.53 16 24 O -0.39 -10.49 10.77 -148.98 -1.60 -12.09 16 25 C 0.05 1.33 6.57 72.01 0.47 1.80 16 26 C -0.14 -3.16 4.79 30.68 0.15 -3.01 16 27 H 0.30 16.12 8.31 -92.71 -0.77 15.35 16 28 H 0.41 13.38 6.51 -96.74 -0.63 12.75 16 29 H 0.05 2.04 4.62 -2.39 -0.01 2.02 16 30 H 0.06 2.09 6.14 -2.39 -0.01 2.07 16 31 H 0.10 1.49 8.09 -2.39 -0.02 1.47 16 32 H 0.07 1.51 6.61 -2.39 -0.02 1.50 16 33 H 0.11 3.45 7.61 -2.91 -0.02 3.43 16 34 H 0.11 3.06 8.06 -2.91 -0.02 3.03 16 35 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 37 H 0.15 1.80 8.03 -2.91 -0.02 1.77 16 38 H 0.08 1.59 6.43 -2.39 -0.02 1.58 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.04 0.96 6.58 -2.39 -0.02 0.94 16 41 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.03 1.04 6.62 -2.39 -0.02 1.03 16 44 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.07 1.74 7.09 -2.39 -0.02 1.72 16 Total: -1.00 -77.97 363.36 -0.91 -78.88 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: 0.38 Total: 37.86 kcal Atomic # 6 Polarization: -70.53 SS G_CDS: 3.75 Total: -66.78 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -0.63 Total: -96.66 kcal Atomic # 8 Polarization: -135.50 SS G_CDS: -6.15 Total: -141.65 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: 145.15 SS G_CDS: -0.28 Total: 144.87 kcal Total: -77.97 -0.91 -78.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193000971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.378 kcal (2) G-P(sol) polarization free energy of solvation -77.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds