Wall clock time and date at job start Sat Apr 11 2020 05:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99948 * 2 1 4 4 H 1.48497 * 109.47151 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46739 * 299.99771 * 3 2 1 6 6 H 1.48502 * 109.47125 * 59.99595 * 3 2 1 7 7 C 1.38808 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00194 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00324 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00466 * 180.27337 * 9 7 2 11 11 C 1.53002 * 109.47098 * 179.72282 * 10 9 7 12 12 H 1.09002 * 109.46919 * 60.00687 * 11 10 9 13 13 C 1.54804 * 109.46532 * 179.97438 * 11 10 9 14 14 N 1.45129 * 109.53772 * 187.87876 * 13 11 10 15 15 C 1.34776 * 118.75761 * 90.71824 * 14 13 11 16 16 O 1.21572 * 120.00300 * 173.77176 * 15 14 13 17 17 C 1.47620 * 119.99893 * 353.77589 * 15 14 13 18 18 N 1.33059 * 120.52591 * 353.97452 * 17 15 14 19 19 N 1.28719 * 120.36413 * 179.97438 * 18 17 15 20 20 C 1.32946 * 121.55320 * 0.02562 * 19 18 17 21 21 O 1.35292 * 119.47190 * 180.02562 * 20 19 18 22 22 N 1.32468 * 121.06203 * 359.97039 * 20 19 18 23 23 C 1.32868 * 119.51066 * 359.78465 * 22 20 19 24 24 O 1.35286 * 120.71350 * 180.23390 * 23 22 20 25 25 C 1.47508 * 122.48330 * 270.74342 * 14 13 11 26 26 C 1.53570 * 111.03051 * 41.60965 * 25 14 13 27 27 C 1.51528 * 109.58270 * 39.97626 * 26 25 14 28 28 O 1.38014 * 109.47007 * 300.01040 * 11 10 9 29 29 H 0.97001 * 120.00196 * 0.02562 * 1 2 3 30 30 H 0.97006 * 119.99489 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47052 * 299.72665 * 10 9 7 32 32 H 1.09008 * 109.46742 * 59.72390 * 10 9 7 33 33 H 1.08998 * 109.46697 * 307.90198 * 13 11 10 34 34 H 1.09008 * 109.46036 * 67.86559 * 13 11 10 35 35 H 0.96699 * 114.00221 * 89.99220 * 21 20 19 36 36 H 0.96699 * 114.00187 * 270.23003 * 24 23 22 37 37 H 1.08999 * 109.16310 * 162.00475 * 25 14 13 38 38 H 1.08997 * 109.16731 * 281.20962 * 25 14 13 39 39 H 1.09008 * 109.44949 * 160.01226 * 26 25 14 40 40 H 1.09003 * 109.44947 * 279.93599 * 26 25 14 41 41 H 1.09006 * 109.59417 * 28.37916 * 27 26 25 42 42 H 1.08996 * 109.59272 * 148.81792 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0072 11 6 1.0639 -4.8197 0.0127 12 1 0.4376 -4.7665 -0.8779 13 6 1.8380 -6.1602 0.0190 14 7 0.9075 -7.2589 -0.1633 15 6 0.6432 -7.6840 -1.4146 16 8 -0.0424 -8.6727 -1.5887 17 6 1.1863 -6.9490 -2.5739 18 7 1.8366 -5.8010 -2.4020 19 7 2.3093 -5.1629 -3.4150 20 6 2.1665 -5.6217 -4.6546 21 8 2.6808 -4.9170 -5.6886 22 7 1.5297 -6.7584 -4.8935 23 6 1.0290 -7.4540 -3.8783 24 8 0.3782 -8.6203 -4.0940 25 6 0.2396 -7.9276 0.9693 26 6 -0.2244 -6.9053 2.0171 27 6 -0.7804 -5.6802 1.3199 28 8 0.2699 -4.7408 1.1388 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6851 -3.7189 -0.8822 32 1 2.6845 -3.7100 0.8977 33 1 2.5663 -6.1629 -0.7919 34 1 2.3550 -6.2766 0.9716 35 1 3.5909 -5.1549 -5.9128 36 1 -0.5731 -8.5197 -4.2353 37 1 -0.6251 -8.4790 0.5999 38 1 0.9361 -8.6255 1.4341 39 1 -0.9992 -7.3511 2.6409 40 1 0.6213 -6.6156 2.6409 41 1 -1.1873 -5.9650 0.3495 42 1 -1.5657 -5.2364 1.9318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200895531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:29 Heat of formation + Delta-G solvation = -18.879047 kcal Electronic energy + Delta-G solvation = -31090.636663 eV Core-core repulsion = 26689.367877 eV Total energy + Delta-G solvation = -4401.268786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -42.51874 -40.54511 -39.01356 -38.28095 -38.00752 -35.49943 -34.95940 -34.46779 -33.25809 -31.96955 -30.84005 -28.80096 -26.97929 -26.42403 -25.42481 -24.84620 -22.85533 -21.92155 -20.92676 -20.37265 -20.27239 -19.79897 -18.84820 -17.59706 -17.15355 -16.85545 -16.68106 -16.40061 -16.10019 -15.69573 -15.19364 -14.89354 -14.44154 -14.31578 -13.94559 -13.68987 -13.36160 -13.21234 -13.06337 -13.00629 -12.83815 -12.36127 -12.26445 -12.05377 -11.88097 -11.85456 -11.49697 -11.18600 -10.90044 -10.75157 -10.69559 -10.45110 -10.35613 -10.10347 -9.91418 -9.70232 -9.61272 -9.39245 -8.75807 -8.65218 -6.75508 -5.62770 -2.89623 -0.36834 -0.04379 2.07102 2.20344 2.52315 2.67393 2.95702 3.33300 3.51694 3.56745 3.59279 3.89894 4.00880 4.12077 4.48965 4.66869 4.71707 4.81607 4.94774 5.02235 5.15693 5.23890 5.38799 5.50971 5.58079 5.62632 5.71153 5.87155 5.99202 6.02749 6.09408 6.15022 6.26916 6.42407 6.76805 6.80000 6.84587 6.87242 6.95742 7.63324 7.82118 7.83868 8.04895 8.55854 9.67429 10.27179 10.62586 11.60567 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.004445 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.757144 B = 6297.959221 C = 8536.713995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.229 4.229 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.169 3.831 11 C 0.100 3.900 12 H 0.047 0.953 13 C 0.066 3.934 14 N -0.584 5.584 15 C 0.577 3.423 16 O -0.517 6.517 17 C -0.066 4.066 18 N -0.094 5.094 19 N -0.270 5.270 20 C 0.484 3.516 21 O -0.444 6.444 22 N -0.510 5.510 23 C 0.419 3.581 24 O -0.445 6.445 25 C 0.112 3.888 26 C -0.166 4.166 27 C 0.072 3.928 28 O -0.367 6.367 29 H 0.252 0.748 30 H 0.386 0.614 31 H 0.046 0.954 32 H 0.022 0.978 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.422 0.578 36 H 0.422 0.578 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.044 0.956 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.957 -20.494 -4.481 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.361 4.361 8 H 0.088 0.912 9 N -0.369 5.369 10 C 0.041 3.959 11 C 0.040 3.960 12 H 0.064 0.936 13 C -0.058 4.058 14 N -0.316 5.316 15 C 0.361 3.639 16 O -0.392 6.392 17 C -0.217 4.217 18 N 0.046 4.954 19 N -0.131 5.131 20 C 0.179 3.821 21 O -0.246 6.246 22 N -0.254 5.254 23 C 0.221 3.779 24 O -0.253 6.253 25 C -0.009 4.009 26 C -0.204 4.204 27 C -0.004 4.004 28 O -0.285 6.285 29 H 0.062 0.938 30 H 0.219 0.781 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.284 0.716 36 H 0.286 0.714 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.285 -19.887 -4.417 20.499 hybrid contribution -0.290 0.002 -0.665 0.726 sum 1.995 -19.884 -5.082 20.620 Atomic orbital electron populations 1.69684 1.05090 1.25183 1.58406 1.24697 0.95456 0.97502 1.03534 0.86145 0.78796 0.84429 0.77032 1.20583 1.22074 1.22071 1.19271 0.90995 0.84127 1.41660 0.91152 1.42196 1.05954 0.99525 1.89194 1.20618 0.92253 0.84293 0.98758 1.22174 0.92331 0.93779 0.87725 0.93552 1.23114 0.92531 0.86065 1.04136 1.47851 1.43826 1.34585 1.05324 1.17199 0.81043 0.83590 0.82066 1.90821 1.38949 1.24503 1.84913 1.24012 1.04671 0.96760 0.96273 1.74730 0.99410 1.00847 1.20363 1.74109 1.17307 1.25518 0.96213 1.21979 0.88901 0.84001 0.87210 1.84728 1.35002 1.58786 1.46110 1.68193 1.13183 1.07076 1.36914 1.19808 0.88222 0.83794 0.86034 1.84639 1.26562 1.21585 1.92524 1.21947 0.98075 0.94733 0.86189 1.22522 1.02803 0.96787 0.98320 1.22113 0.90010 0.89052 0.99265 1.86451 1.44473 1.54070 1.43533 0.93808 0.78073 0.93631 0.95979 0.87242 0.89407 0.71642 0.71433 0.88969 0.91072 0.89459 0.89804 0.93778 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.12 13.06 55.49 0.72 -28.40 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 3 Si 0.90 22.93 29.55 -169.99 -5.02 17.90 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 6 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 7 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.72 -19.05 5.49 -59.91 -0.33 -19.38 16 10 C 0.17 3.48 5.95 -4.04 -0.02 3.45 16 11 C 0.10 1.70 1.89 -25.78 -0.05 1.65 16 12 H 0.05 0.86 7.08 -51.93 -0.37 0.50 16 13 C 0.07 0.86 4.40 -3.83 -0.02 0.85 16 14 N -0.58 -7.11 2.19 -173.66 -0.38 -7.49 16 15 C 0.58 7.48 7.59 -12.43 -0.09 7.39 16 16 O -0.52 -7.14 14.65 -15.96 -0.23 -7.37 16 17 C -0.07 -0.85 6.61 -82.56 -0.55 -1.39 16 18 N -0.09 -1.33 5.57 33.45 0.19 -1.14 16 19 N -0.27 -3.90 11.60 29.21 0.34 -3.56 16 20 C 0.48 6.03 8.81 -90.58 -0.80 5.23 16 21 O -0.44 -4.50 13.63 -17.57 -0.24 -4.74 16 22 N -0.51 -6.20 10.58 -14.33 -0.15 -6.35 16 23 C 0.42 4.92 7.84 -16.15 -0.13 4.79 16 24 O -0.45 -4.41 11.78 -38.82 -0.46 -4.87 16 25 C 0.11 1.12 6.12 -3.19 -0.02 1.10 16 26 C -0.17 -1.66 5.78 -27.18 -0.16 -1.81 16 27 C 0.07 0.97 6.37 36.41 0.23 1.20 16 28 O -0.37 -6.45 9.18 -26.53 -0.24 -6.69 16 29 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.39 10.90 7.53 -40.82 -0.31 10.59 16 31 H 0.05 0.93 7.99 -51.93 -0.41 0.52 16 32 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.11 1.43 5.18 -52.41 -0.27 1.16 16 34 H 0.09 1.06 8.11 -51.92 -0.42 0.64 16 35 H 0.42 1.72 9.06 45.56 0.41 2.14 16 36 H 0.42 2.33 9.06 45.56 0.41 2.75 16 37 H 0.09 0.93 7.08 -51.93 -0.37 0.56 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.67 8.14 -51.92 -0.42 0.24 16 40 H 0.08 0.88 8.01 -51.93 -0.42 0.47 16 41 H 0.04 0.60 7.40 -51.93 -0.38 0.21 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -37.01 350.66 -5.73 -42.74 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -3.36 Total: 8.90 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: -1.85 Total: 15.15 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: 0.39 Total: -66.31 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -1.17 Total: -23.67 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.01 -5.73 -42.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200895531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.864 kcal (2) G-P(sol) polarization free energy of solvation -37.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds