Wall clock time and date at job start Sat Apr 11 2020 05:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99400 * 2 1 4 4 H 1.08996 * 110.91811 * 32.45186 * 3 2 1 5 5 C 1.54907 * 111.00347 * 268.54505 * 3 2 1 6 6 N 1.47424 * 104.83241 * 204.92001 * 5 3 2 7 7 C 1.36943 * 125.64955 * 204.09232 * 6 5 3 8 8 H 1.08002 * 119.99788 * 180.02562 * 7 6 5 9 9 C 1.38811 * 119.99622 * 0.30258 * 7 6 5 10 10 N 1.31614 * 120.00467 * 359.72375 * 9 7 6 11 11 Si 1.86801 * 119.99700 * 179.72266 * 9 7 6 12 12 H 1.48501 * 109.46896 * 89.99850 * 11 9 7 13 13 H 1.48499 * 109.47039 * 210.00011 * 11 9 7 14 14 H 1.48501 * 109.47275 * 329.99811 * 11 9 7 15 15 C 1.47024 * 108.70428 * 24.35838 * 6 5 3 16 16 C 1.54336 * 107.26414 * 358.58383 * 15 6 5 17 17 H 1.09001 * 110.51267 * 96.44857 * 16 15 6 18 18 N 1.46497 * 111.00488 * 219.60321 * 16 15 6 19 19 C 1.34783 * 119.99813 * 268.78501 * 18 16 15 20 20 O 1.21349 * 119.99960 * 359.97438 * 19 18 16 21 21 C 1.49448 * 119.99823 * 179.97438 * 19 18 16 22 22 O 1.21349 * 120.00216 * 359.97438 * 21 19 18 23 23 N 1.34774 * 120.00215 * 179.97438 * 21 19 18 24 24 C 1.46499 * 120.00355 * 179.97438 * 23 21 19 25 25 C 1.53005 * 109.47038 * 179.97438 * 24 23 21 26 26 F 1.39901 * 109.46645 * 60.00364 * 25 24 23 27 27 F 1.39900 * 109.47030 * 179.97438 * 25 24 23 28 28 F 1.39899 * 109.47464 * 300.00388 * 25 24 23 29 29 H 1.09004 * 109.47206 * 299.99678 * 1 2 3 30 30 H 1.09000 * 109.47403 * 59.99930 * 1 2 3 31 31 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 32 32 H 1.09001 * 110.36805 * 86.08169 * 5 3 2 33 33 H 1.08999 * 110.36920 * 323.75899 * 5 3 2 34 34 H 0.96995 * 120.00147 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.88094 * 118.13011 * 15 6 5 36 36 H 1.09003 * 109.88256 * 239.30018 * 15 6 5 37 37 H 0.96994 * 120.00057 * 88.77846 * 18 16 15 38 38 H 0.97006 * 119.99879 * 0.02562 * 23 21 19 39 39 H 1.08997 * 109.46878 * 300.00287 * 24 23 21 40 40 H 1.09001 * 109.46672 * 60.00676 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3834 2.0104 0.5463 5 6 2.2694 1.7978 -1.4457 6 7 3.3609 2.7808 -1.3196 7 6 3.6234 3.7990 -2.1969 8 1 4.4508 4.4688 -2.0148 9 6 2.8226 3.9735 -3.3172 10 7 1.8143 3.1571 -3.5391 11 14 3.1759 5.3671 -4.5099 12 1 4.1131 4.8940 -5.5601 13 1 1.9076 5.8113 -5.1418 14 1 3.7878 6.5037 -3.7758 15 6 4.1249 2.4830 -0.0992 16 6 3.4485 1.2740 0.5810 17 1 3.9550 0.3486 0.3066 18 7 3.4231 1.4369 2.0367 19 6 4.4343 0.9551 2.7864 20 8 5.3654 0.3861 2.2557 21 6 4.4087 1.1218 4.2714 22 8 3.4778 1.6912 4.8021 23 7 5.4195 0.6396 5.0211 24 6 5.3947 0.8035 6.4767 25 6 6.6492 0.1709 7.0826 26 9 7.7859 0.7987 6.5619 27 9 6.6258 0.3279 8.4726 28 9 6.6833 -1.1917 6.7672 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.3759 2.2730 -1.8506 33 1 2.5786 0.9669 -2.0797 34 1 1.2550 3.2789 -4.3221 35 1 5.1549 2.2372 -0.3574 36 1 4.1034 3.3426 0.5706 37 1 2.6787 1.8915 2.4610 38 1 6.1639 0.1847 4.5969 39 1 5.3677 1.8651 6.7224 40 1 4.5093 0.3139 6.8824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213642767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:37 Heat of formation + Delta-G solvation = -252.127873 kcal Electronic energy + Delta-G solvation = -29717.942856 eV Core-core repulsion = 24732.410151 eV Total energy + Delta-G solvation = -4985.532705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -51.23079 -48.73854 -48.71605 -41.93479 -40.40717 -39.34385 -37.55174 -36.68899 -35.59113 -33.69017 -30.96163 -30.59991 -29.04712 -27.56638 -26.63467 -25.46147 -23.95511 -22.44980 -22.10025 -21.52413 -20.30335 -19.69784 -19.55373 -19.05605 -18.29875 -18.22835 -17.58421 -17.21110 -17.11104 -16.52685 -16.29207 -15.87093 -15.80133 -15.69334 -15.50985 -15.36518 -15.21347 -15.12672 -14.95349 -14.84852 -14.83001 -14.62149 -14.12896 -13.96825 -13.71663 -13.19811 -13.09931 -13.05302 -12.94869 -12.73364 -12.59207 -12.37406 -12.04556 -11.90182 -11.56829 -10.99673 -10.79240 -10.72077 -10.64035 -10.29186 -8.97254 -7.80646 -5.27706 0.17545 0.88611 1.48853 1.50406 1.56568 1.59189 1.97962 2.23522 2.45391 2.57927 2.71067 2.91241 3.07894 3.25595 3.31152 3.54544 3.79100 3.95365 4.01819 4.06686 4.20584 4.33272 4.42069 4.59808 4.66307 4.67583 4.77460 4.84311 4.89047 5.18758 5.32130 5.45596 5.61259 5.69267 6.11403 6.18525 6.28839 6.48566 6.78356 7.04837 7.69400 8.30921 9.20882 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018398 B = 0.002389 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.515158 B =11717.330955 C =12695.705995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.394 6.394 3 C 0.075 3.925 4 H 0.088 0.912 5 C 0.145 3.855 6 N -0.619 5.619 7 C -0.242 4.242 8 H 0.085 0.915 9 C -0.062 4.062 10 N -0.947 5.947 11 Si 0.983 3.017 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.268 1.268 15 C 0.130 3.870 16 C 0.151 3.849 17 H 0.096 0.904 18 N -0.673 5.673 19 C 0.510 3.490 20 O -0.538 6.538 21 C 0.532 3.468 22 O -0.520 6.520 23 N -0.696 5.696 24 C 0.077 3.923 25 C 0.456 3.544 26 F -0.183 7.183 27 F -0.171 7.171 28 F -0.182 7.182 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.105 0.895 32 H 0.088 0.912 33 H -0.007 1.007 34 H 0.250 0.750 35 H 0.028 0.972 36 H 0.043 0.957 37 H 0.421 0.579 38 H 0.424 0.576 39 H 0.138 0.862 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.308 -6.254 22.840 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.312 6.312 3 C 0.015 3.985 4 H 0.106 0.894 5 C 0.019 3.981 6 N -0.347 5.347 7 C -0.370 4.370 8 H 0.102 0.898 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.811 3.189 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.193 1.193 15 C 0.004 3.996 16 C 0.045 3.955 17 H 0.114 0.886 18 N -0.325 5.325 19 C 0.290 3.710 20 O -0.415 6.415 21 C 0.312 3.688 22 O -0.396 6.396 23 N -0.352 5.352 24 C -0.048 4.048 25 C 0.401 3.599 26 F -0.164 7.164 27 F -0.152 7.152 28 F -0.164 7.164 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.011 0.989 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.259 0.741 38 H 0.262 0.738 39 H 0.155 0.845 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.362 -6.350 22.710 23.819 hybrid contribution 0.303 0.587 -0.981 1.183 sum 3.665 -5.763 21.729 22.777 Atomic orbital electron populations 1.22972 0.79284 1.03953 1.00684 1.87824 1.21722 1.26629 1.95019 1.23637 0.92679 0.84953 0.97235 0.89442 1.22098 0.93937 0.90404 0.91686 1.44537 1.32618 1.32949 1.24559 1.19452 1.11233 1.04821 1.01498 0.89756 1.25635 0.97966 1.01721 1.00131 1.69973 1.20514 1.40040 1.29129 0.85017 0.76630 0.78717 0.78561 1.21578 1.21754 1.19281 1.21690 0.94577 0.94965 0.88411 1.21851 0.96306 0.99091 0.78233 0.88565 1.45576 1.23703 1.56826 1.06396 1.20149 0.83014 0.79721 0.88085 1.90794 1.34510 1.42068 1.74129 1.19656 0.82629 0.79298 0.87174 1.90802 1.34187 1.41033 1.73544 1.45313 1.24682 1.58664 1.06518 1.22784 0.95746 1.06110 0.80123 1.20442 0.85766 0.76716 0.76948 1.93247 1.54658 1.82082 1.86439 1.93241 1.96644 1.95334 1.30024 1.93245 1.96832 1.33750 1.92524 0.92314 0.94577 0.87694 0.89442 0.98894 0.94041 0.95393 0.93888 0.74102 0.73804 0.84469 0.84341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.89 113.37 1.23 1.95 16 2 O -0.39 -13.57 10.51 -148.98 -1.57 -15.14 16 3 C 0.07 2.74 3.12 31.99 0.10 2.84 16 4 H 0.09 2.91 7.77 -2.39 -0.02 2.89 16 5 C 0.14 7.01 5.63 86.85 0.49 7.50 16 6 N -0.62 -31.35 3.39 -691.96 -2.35 -33.70 16 7 C -0.24 -13.25 10.27 84.03 0.86 -12.39 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 10 N -0.95 -54.80 10.09 21.65 0.22 -54.59 16 11 Si 0.98 44.59 29.55 68.60 2.03 46.61 16 12 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 15 C 0.13 5.38 7.01 86.73 0.61 5.99 16 16 C 0.15 5.32 3.04 46.19 0.14 5.46 16 17 H 0.10 3.70 7.55 -2.39 -0.02 3.68 16 18 N -0.67 -18.79 5.11 -438.22 -2.24 -21.03 16 19 C 0.51 13.72 7.89 87.27 0.69 14.41 16 20 O -0.54 -17.16 16.12 -3.24 -0.05 -17.21 16 21 C 0.53 11.27 7.89 87.27 0.69 11.96 16 22 O -0.52 -12.15 16.48 -3.24 -0.05 -12.20 16 23 N -0.70 -10.77 5.41 -464.41 -2.51 -13.28 16 24 C 0.08 0.75 5.64 86.38 0.49 1.24 16 25 C 0.46 5.12 3.11 71.98 0.22 5.34 16 26 F -0.18 -2.57 17.18 44.97 0.77 -1.80 16 27 F -0.17 -1.99 17.32 44.97 0.78 -1.21 16 28 F -0.18 -2.50 17.18 44.97 0.77 -1.73 16 29 H 0.06 1.29 8.11 -2.38 -0.02 1.27 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.09 4.72 5.86 -2.39 -0.01 4.71 16 33 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.25 14.02 8.31 -92.71 -0.77 13.24 16 35 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.04 1.69 8.03 -2.39 -0.02 1.67 16 37 H 0.42 10.19 8.04 -92.71 -0.74 9.45 16 38 H 0.42 6.47 7.83 -92.70 -0.73 5.74 16 39 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -67.96 357.81 1.44 -66.53 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -0.35 Total: 17.38 kcal Atomic # 6 Polarization: 35.37 SS G_CDS: 5.99 Total: 41.35 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -6.88 Total: -122.59 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.67 Total: -44.55 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 2.32 Total: -4.74 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -67.96 1.44 -66.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213642767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.602 kcal (2) G-P(sol) polarization free energy of solvation -67.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds