Wall clock time and date at job start Sat Apr 11 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45209 * 109.46839 * 2 1 4 4 C 1.34229 * 116.99837 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99985 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99638 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.46651 * 185.90735 * 6 4 3 8 8 H 1.08998 * 109.47746 * 306.34666 * 7 6 4 9 9 C 1.50704 * 109.47060 * 66.35314 * 7 6 4 10 10 H 1.08002 * 119.99827 * 244.79511 * 9 7 6 11 11 C 1.37876 * 120.00186 * 64.80013 * 9 7 6 12 12 N 1.31519 * 120.00135 * 6.02417 * 11 9 7 13 13 Si 1.86804 * 119.99997 * 186.03134 * 11 9 7 14 14 H 1.48493 * 109.46781 * 269.99403 * 13 11 9 15 15 H 1.48501 * 109.46966 * 29.99529 * 13 11 9 16 16 H 1.48501 * 109.46979 * 149.99487 * 13 11 9 17 17 O 1.42907 * 109.46864 * 186.34753 * 7 6 4 18 18 C 1.35710 * 116.99848 * 154.69165 * 17 7 6 19 19 C 1.40369 * 120.96743 * 93.01526 * 18 17 7 20 20 O 1.35565 * 120.52924 * 359.97438 * 19 18 17 21 21 N 1.32421 * 118.94003 * 179.71704 * 19 18 17 22 22 C 1.32029 * 121.03387 * 0.57003 * 21 19 18 23 23 C 1.50700 * 118.91890 * 179.72739 * 22 21 19 24 24 N 1.31358 * 122.16231 * 359.69812 * 22 21 19 25 25 C 1.33474 * 120.93904 * 0.02562 * 24 22 21 26 26 C 1.48070 * 120.57253 * 180.02562 * 25 24 22 27 27 N 1.34771 * 119.99867 * 4.46737 * 26 25 24 28 28 O 1.21519 * 119.99792 * 184.46593 * 26 25 24 29 29 H 1.08993 * 109.47048 * 60.00228 * 1 2 3 30 30 H 1.09000 * 109.46483 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46731 * 299.99576 * 1 2 3 32 32 H 1.09000 * 109.47323 * 240.00143 * 2 1 3 33 33 H 1.08994 * 109.47543 * 119.99601 * 2 1 3 34 34 H 1.08994 * 109.47112 * 65.90922 * 6 4 3 35 35 H 1.08998 * 109.47175 * 305.90738 * 6 4 3 36 36 H 0.97003 * 119.99718 * 355.10414 * 12 11 9 37 37 H 0.96699 * 114.00052 * 95.02599 * 20 19 18 38 38 H 1.09000 * 109.46888 * 269.97371 * 23 22 21 39 39 H 1.08998 * 109.47239 * 29.97080 * 23 22 21 40 40 H 1.08997 * 109.47278 * 149.97634 * 23 22 21 41 41 H 0.97005 * 120.00116 * 0.02562 * 27 26 25 42 42 H 0.97001 * 120.00176 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0808 0.5868 0.0005 6 6 3.9206 2.9376 0.0000 7 6 5.4415 2.8604 -0.1477 8 1 5.8482 2.2022 0.6200 9 6 5.7869 2.3167 -1.5101 10 1 6.2887 1.3646 -1.6003 11 6 5.4625 3.0348 -2.6415 12 7 4.9600 4.2452 -2.5306 13 14 5.7366 2.2886 -4.3320 14 1 7.1010 2.6299 -4.8083 15 1 5.5955 0.8126 -4.2503 16 1 4.7310 2.8302 -5.2811 17 8 6.0013 4.1670 -0.0003 18 6 7.2893 4.2415 0.4206 19 6 8.3469 4.3125 -0.4996 20 8 8.1012 4.3075 -1.8328 21 7 9.5881 4.3896 -0.0446 22 6 9.8392 4.3891 1.2516 23 6 11.2701 4.4725 1.7167 24 7 8.8826 4.3188 2.1490 25 6 7.6015 4.2436 1.7821 26 6 6.5296 4.1652 2.8006 27 7 6.8358 4.2601 4.1097 28 8 5.3740 4.0154 2.4562 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3632 0.5137 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 3.6714 3.4342 0.9377 35 1 3.5029 3.5032 -0.8329 36 1 4.7512 4.6052 -1.6544 37 1 8.0526 5.1891 -2.2271 38 1 11.6789 3.4670 1.8165 39 1 11.8568 5.0326 0.9886 40 1 11.3097 4.9782 2.6815 41 1 7.7583 4.3801 4.3846 42 1 6.1337 4.2092 4.7770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234469162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:37 Heat of formation + Delta-G solvation = -146.960794 kcal Electronic energy + Delta-G solvation = -31126.545212 eV Core-core repulsion = 26687.429633 eV Total energy + Delta-G solvation = -4439.115578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.01165 -39.71460 -38.85888 -37.71605 -36.70960 -35.88823 -33.74280 -33.45687 -32.45131 -31.52102 -31.46124 -30.00118 -27.43033 -25.68167 -25.16790 -23.30202 -22.58810 -21.68774 -20.76152 -19.85511 -18.39464 -18.29177 -17.64528 -17.24020 -17.07662 -16.47187 -15.99029 -15.83125 -15.50011 -15.11682 -14.55198 -14.13939 -13.98446 -13.86821 -13.73208 -13.58332 -13.34789 -12.92132 -12.89808 -12.49836 -12.41355 -12.10216 -12.04897 -11.70214 -11.61958 -11.25220 -10.99042 -10.74153 -10.57196 -10.39915 -10.19313 -10.17661 -10.12599 -10.07513 -9.90063 -9.57571 -9.52659 -8.91624 -8.55101 -8.38056 -8.00184 -6.37499 -4.16152 0.78025 1.17387 3.00902 3.10991 3.25226 3.41085 3.45029 3.47154 3.62670 3.82688 3.93801 4.13587 4.49906 4.59388 4.83855 5.13888 5.18651 5.25058 5.34890 5.40962 5.49698 5.51879 5.56490 5.61091 5.88243 5.94485 5.95321 5.96413 6.11596 6.22950 6.36103 6.52015 6.69453 6.86939 6.92272 7.04035 7.19310 7.46025 7.91772 8.02171 8.26624 8.28919 8.43746 8.54961 8.65064 8.83320 9.58556 10.97515 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010824 B = 0.005064 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.139235 B = 5527.553349 C = 7497.437874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.367 6.367 4 C 0.479 3.521 5 O -0.500 6.500 6 C -0.099 4.099 7 C 0.228 3.772 8 H 0.025 0.975 9 C -0.595 4.595 10 H 0.055 0.945 11 C 0.052 3.948 12 N -0.880 5.880 13 Si 1.059 2.941 14 H -0.282 1.282 15 H -0.290 1.290 16 H -0.285 1.285 17 O -0.313 6.313 18 C 0.094 3.906 19 C 0.356 3.644 20 O -0.431 6.431 21 N -0.519 5.519 22 C 0.297 3.703 23 C -0.075 4.075 24 N -0.494 5.494 25 C 0.070 3.930 26 C 0.579 3.421 27 N -0.841 5.841 28 O -0.505 6.505 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.284 0.716 37 H 0.397 0.603 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.408 0.592 42 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.601 1.044 9.682 10.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.285 6.285 4 C 0.322 3.678 5 O -0.386 6.386 6 C -0.137 4.137 7 C 0.176 3.824 8 H 0.043 0.957 9 C -0.631 4.631 10 H 0.073 0.927 11 C -0.158 4.158 12 N -0.516 5.516 13 Si 0.887 3.113 14 H -0.209 1.209 15 H -0.217 1.217 16 H -0.210 1.210 17 O -0.227 6.227 18 C 0.039 3.961 19 C 0.163 3.837 20 O -0.235 6.235 21 N -0.248 5.248 22 C 0.029 3.971 23 C -0.133 4.133 24 N -0.215 5.215 25 C -0.074 4.074 26 C 0.361 3.639 27 N -0.406 5.406 28 O -0.378 6.378 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.256 0.744 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.238 0.762 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.606 0.514 7.919 8.352 hybrid contribution -0.332 -0.315 1.556 1.622 sum 2.274 0.200 9.475 9.746 Atomic orbital electron populations 1.21775 0.93253 1.02331 1.03321 1.22858 0.94809 0.81537 1.02146 1.86514 1.25787 1.31156 1.85062 1.23567 0.79530 0.93068 0.71639 1.90588 1.60030 1.43221 1.44736 1.21222 0.97865 0.89863 1.04707 1.19825 0.87644 0.78285 0.96639 0.95714 1.22338 1.42398 1.07275 0.91115 0.92679 1.25594 0.92819 0.94300 1.03062 1.70690 1.37825 1.13674 1.29371 0.83702 0.76979 0.75253 0.75345 1.20878 1.21658 1.21038 1.86048 1.18867 1.32914 1.84878 1.20587 0.88778 0.96558 0.90146 1.20195 0.86014 0.90967 0.86479 1.85010 1.91530 1.32528 1.14477 1.67692 1.23713 1.15390 1.18012 1.22608 0.96226 0.94822 0.83464 1.20452 0.87441 1.03522 1.01918 1.67923 0.99223 1.14612 1.39788 1.21913 0.91211 1.01626 0.92693 1.17603 0.87138 0.76658 0.82452 1.43576 1.13538 1.76747 1.06720 1.90860 1.19200 1.47108 1.80609 0.91531 0.90788 0.91767 0.91523 0.91923 0.88699 0.87274 0.90190 0.74425 0.90081 0.89856 0.89902 0.76234 0.76688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.29 37.16 0.38 -1.39 16 2 C 0.06 0.98 6.19 37.16 0.23 1.20 16 3 O -0.37 -7.39 10.22 -39.25 -0.40 -7.79 16 4 C 0.48 11.19 7.65 36.01 0.28 11.47 16 5 O -0.50 -12.77 14.91 -18.75 -0.28 -13.05 16 6 C -0.10 -2.36 5.23 -27.88 -0.15 -2.51 16 7 C 0.23 5.87 1.01 -27.88 -0.03 5.84 16 8 H 0.02 0.68 7.51 -51.93 -0.39 0.29 16 9 C -0.60 -16.52 6.99 -34.44 -0.24 -16.76 16 10 H 0.05 1.65 7.82 -52.49 -0.41 1.24 16 11 C 0.05 1.40 4.35 -17.82 -0.08 1.32 16 12 N -0.88 -23.99 12.86 55.43 0.71 -23.28 16 13 Si 1.06 25.08 29.91 -169.99 -5.08 19.99 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 O -0.31 -7.67 6.32 -46.45 -0.29 -7.97 16 18 C 0.09 2.09 5.60 -38.24 -0.21 1.87 16 19 C 0.36 7.54 7.86 -16.50 -0.13 7.41 16 20 O -0.43 -9.30 11.94 -30.65 -0.37 -9.67 16 21 N -0.52 -9.76 10.33 -10.64 -0.11 -9.87 16 22 C 0.30 4.84 7.64 -157.37 -1.20 3.63 16 23 C -0.07 -0.82 10.31 36.01 0.37 -0.45 16 24 N -0.49 -8.24 9.59 -7.33 -0.07 -8.31 16 25 C 0.07 1.36 6.80 -82.58 -0.56 0.80 16 26 C 0.58 10.45 8.08 -12.23 -0.10 10.35 16 27 N -0.84 -10.45 8.87 30.58 0.27 -10.18 16 28 O -0.51 -10.70 13.64 -15.94 -0.22 -10.91 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 33 H 0.06 0.97 8.13 -51.93 -0.42 0.54 16 34 H 0.09 2.17 6.73 -51.93 -0.35 1.82 16 35 H 0.11 2.73 6.05 -51.93 -0.31 2.42 16 36 H 0.28 7.83 4.84 -40.82 -0.20 7.63 16 37 H 0.40 6.96 9.06 45.56 0.41 7.37 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.41 4.25 8.22 -40.82 -0.34 3.91 16 42 H 0.40 4.06 8.93 -40.82 -0.36 3.70 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -34.03 362.17 -5.94 -39.97 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -4.13 Total: 12.81 kcal Atomic # 6 Polarization: 24.23 SS G_CDS: -1.44 Total: 22.79 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.80 Total: -51.64 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -1.56 Total: -49.39 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.03 -5.94 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234469162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.988 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds