Wall clock time and date at job start Sat Apr 11 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81404 * 103.00041 * 2 1 4 4 C 1.53001 * 109.47093 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46939 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.46849 * 179.97438 * 5 4 3 7 7 C 1.34783 * 119.99972 * 179.97438 * 6 5 4 8 8 S 1.71206 * 119.99687 * 4.61665 * 7 6 5 9 9 N 1.34775 * 120.00002 * 184.61501 * 7 6 5 10 10 C 1.46499 * 120.00181 * 2.60417 * 9 7 6 11 11 C 1.50696 * 109.47292 * 260.72941 * 10 9 7 12 12 H 1.08001 * 120.00024 * 239.09023 * 11 10 9 13 13 C 1.37883 * 119.99898 * 59.08600 * 11 10 9 14 14 N 1.31513 * 119.99909 * 5.24625 * 13 11 10 15 15 Si 1.86799 * 119.99586 * 185.23582 * 13 11 10 16 16 H 1.48491 * 109.47600 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46826 * 120.01019 * 15 13 11 18 18 H 1.48505 * 109.46981 * 240.00249 * 15 13 11 19 19 C 1.46498 * 119.99550 * 182.60536 * 9 7 6 20 20 C 1.50703 * 109.47167 * 264.74954 * 19 9 7 21 21 C 1.38676 * 120.41895 * 274.98961 * 20 19 9 22 22 C 1.38621 * 118.41684 * 179.78169 * 21 20 19 23 23 C 1.38223 * 119.16446 * 0.51533 * 22 21 20 24 24 N 1.31852 * 120.76310 * 359.72430 * 23 22 21 25 25 C 1.31885 * 121.72650 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47280 * 300.00139 * 1 2 3 28 28 H 1.09004 * 109.47026 * 59.99893 * 1 2 3 29 29 H 1.09005 * 109.46727 * 59.99876 * 3 2 1 30 30 H 1.08996 * 109.47144 * 300.00431 * 3 2 1 31 31 H 1.08993 * 109.47025 * 60.00494 * 4 3 2 32 32 H 1.09005 * 109.46947 * 300.00296 * 4 3 2 33 33 H 1.09003 * 109.47042 * 60.00341 * 5 4 3 34 34 H 1.08996 * 109.46922 * 300.00268 * 5 4 3 35 35 H 0.96998 * 120.00538 * 0.02562 * 6 5 4 36 36 H 1.08995 * 109.46950 * 140.72768 * 10 9 7 37 37 H 1.09007 * 109.47150 * 20.72878 * 10 9 7 38 38 H 0.97005 * 119.99765 * 175.00211 * 14 13 11 39 39 H 1.08997 * 109.47765 * 24.75439 * 19 9 7 40 40 H 1.08999 * 109.46695 * 144.75428 * 19 9 7 41 41 H 1.08002 * 120.78998 * 0.02562 * 21 20 19 42 42 H 1.08008 * 120.41983 * 180.21855 * 22 21 20 43 43 H 1.08006 * 119.62360 * 179.75030 * 23 22 21 44 44 H 1.07997 * 119.62117 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9400 0.0006 5 6 4.0865 3.4308 0.0013 6 7 5.5422 3.5959 0.0025 7 6 6.0803 4.8316 0.0027 8 16 5.0668 6.2064 0.1209 9 7 7.4160 4.9850 -0.0900 10 6 8.2788 3.8117 -0.2485 11 6 8.8680 3.4373 1.0870 12 1 9.9399 3.4174 1.2179 13 6 8.0386 3.1201 2.1419 14 7 6.7389 3.0435 1.9564 15 14 8.7613 2.7989 3.8342 16 1 10.2378 2.9473 3.7783 17 1 8.2025 3.7745 4.8043 18 1 8.4179 1.4200 4.2655 19 6 8.0051 6.3250 -0.0323 20 6 8.2156 6.8420 -1.4322 21 6 9.3651 6.5156 -2.1358 22 6 9.5139 7.0100 -3.4223 23 6 8.5236 7.8150 -3.9533 24 7 7.4457 8.1088 -3.2531 25 6 7.2683 7.6523 -2.0285 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8031 2.2371 0.8900 30 1 1.8031 2.2372 -0.8899 31 1 4.1616 1.4704 -0.8891 32 1 4.1609 1.4704 0.8909 33 1 3.6673 3.9001 0.8913 34 1 3.6679 3.9006 -0.8886 35 1 6.1188 2.8159 0.0024 36 1 9.0821 4.0432 -0.9480 37 1 7.6913 2.9779 -0.6331 38 1 6.1623 2.7501 2.6792 39 1 7.3335 6.9945 0.5050 40 1 8.9631 6.2787 0.4857 41 1 10.1246 5.8878 -1.6935 42 1 10.3947 6.7731 -4.0008 43 1 8.6337 8.2075 -4.9534 44 1 6.3721 7.9140 -1.4858 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247818585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:41 Heat of formation + Delta-G solvation = 56.340293 kcal Electronic energy + Delta-G solvation = -25022.367363 eV Core-core repulsion = 21613.406418 eV Total energy + Delta-G solvation = -3408.960945 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.88169 -38.33669 -35.85711 -33.32899 -32.91304 -31.86249 -31.01591 -29.12572 -28.31790 -26.82283 -24.93650 -23.94417 -23.07638 -21.90263 -21.50361 -20.23260 -17.29876 -17.04530 -16.66054 -16.32645 -15.93490 -15.71263 -15.53072 -15.20853 -14.80325 -14.27301 -14.06122 -13.79871 -13.56678 -13.49360 -13.27325 -13.17030 -12.91742 -12.78680 -12.69879 -12.09521 -11.81296 -11.68053 -11.46435 -11.17385 -11.16504 -11.09648 -11.00234 -10.49348 -10.27157 -10.04662 -9.98611 -9.85970 -9.50174 -9.11289 -8.99768 -8.68641 -7.76721 -7.53713 -6.86273 -6.50676 -6.43422 -4.69715 1.41860 1.57791 1.61181 2.51373 2.76677 3.02617 3.15727 3.16629 3.21406 3.75215 4.04711 4.22399 4.45614 4.80685 4.91934 4.93125 4.96882 4.97641 5.09220 5.14997 5.28636 5.31831 5.34846 5.44494 5.51186 5.61919 5.68093 5.73749 5.99044 6.00608 6.16280 6.28310 6.37803 6.39140 6.44553 6.47361 6.60911 6.69967 7.09716 7.17114 7.39237 7.58658 7.76708 8.07726 8.34299 8.38544 8.62996 9.05694 10.45005 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009016 B = 0.003879 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.811199 B = 7216.156978 C = 9359.947323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.268 6.268 3 C -0.074 4.074 4 C -0.113 4.113 5 C 0.139 3.861 6 N -0.632 5.632 7 C 0.616 3.384 8 S -0.768 6.768 9 N -0.540 5.540 10 C 0.215 3.785 11 C -0.543 4.543 12 H 0.068 0.932 13 C 0.077 3.923 14 N -0.874 5.874 15 Si 0.906 3.094 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.281 1.281 19 C 0.158 3.842 20 C -0.143 4.143 21 C -0.066 4.066 22 C -0.186 4.186 23 C 0.087 3.913 24 N -0.493 5.493 25 C 0.128 3.872 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.414 0.586 36 H 0.040 0.960 37 H 0.037 0.963 38 H 0.273 0.727 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.147 0.853 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 -2.801 -6.099 7.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.042 6.042 3 C -0.223 4.223 4 C -0.152 4.152 5 C 0.012 3.988 6 N -0.265 5.265 7 C 0.250 3.750 8 S -0.641 6.641 9 N -0.246 5.246 10 C 0.094 3.906 11 C -0.581 4.581 12 H 0.086 0.914 13 C -0.129 4.129 14 N -0.511 5.511 15 Si 0.733 3.267 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.207 1.207 19 C 0.034 3.966 20 C -0.146 4.146 21 C -0.092 4.092 22 C -0.206 4.206 23 C -0.070 4.070 24 N -0.201 5.201 25 C -0.030 4.030 26 H 0.117 0.883 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.261 0.739 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.164 0.836 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.359 -2.397 -6.295 7.527 hybrid contribution 0.926 -0.934 1.387 1.912 sum -2.433 -3.331 -4.907 6.411 Atomic orbital electron populations 1.23355 0.94562 1.06240 1.04883 1.86960 1.06912 1.12280 1.98097 1.23266 1.00274 0.93421 1.05342 1.21463 0.92434 0.97217 1.04091 1.21274 0.80785 0.93658 1.03102 1.45021 1.07068 1.06208 1.68217 1.21350 0.85585 0.89160 0.78881 1.92750 1.59572 1.30411 1.81369 1.47643 1.02890 1.07927 1.66174 1.19557 0.90192 0.83821 0.96983 1.21519 0.93931 1.47138 0.95539 0.91377 1.25081 0.94891 0.93125 0.99800 1.69667 1.03012 1.44748 1.33689 0.86296 0.79331 0.78031 0.83015 1.19636 1.20563 1.20675 1.20396 1.00384 0.84176 0.91693 1.21372 0.95250 0.99032 0.98993 1.21583 0.97047 0.96668 0.93939 1.22027 1.01038 1.00864 0.96668 1.22708 0.89814 0.95118 0.99343 1.67798 1.21962 1.22583 1.07776 1.23367 0.98181 0.91321 0.90100 0.88320 0.90524 0.90578 0.89625 0.89840 0.91077 0.89797 0.90442 0.91493 0.73869 0.94153 0.94513 0.91604 0.86938 0.89627 0.85088 0.85460 0.83563 0.80830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.76 101.05 1.09 0.04 16 2 S -0.27 -3.26 22.38 -107.50 -2.41 -5.67 16 3 C -0.07 -0.89 5.94 37.16 0.22 -0.67 16 4 C -0.11 -1.59 5.34 -26.73 -0.14 -1.73 16 5 C 0.14 2.35 5.14 -4.04 -0.02 2.33 16 6 N -0.63 -12.38 3.60 -62.03 -0.22 -12.61 16 7 C 0.62 13.28 6.56 -86.91 -0.57 12.71 16 8 S -0.77 -17.89 25.57 -107.50 -2.75 -20.63 16 9 N -0.54 -11.04 2.29 -178.46 -0.41 -11.44 16 10 C 0.22 4.38 5.59 -5.20 -0.03 4.35 16 11 C -0.54 -12.12 9.41 -34.44 -0.32 -12.45 16 12 H 0.07 1.53 7.82 -52.49 -0.41 1.12 16 13 C 0.08 1.75 5.35 -17.82 -0.10 1.66 16 14 N -0.87 -19.95 8.25 55.43 0.46 -19.50 16 15 Si 0.91 18.88 29.54 -169.99 -5.02 13.86 16 16 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 C 0.16 2.98 5.38 -5.19 -0.03 2.95 16 20 C -0.14 -2.45 5.47 -104.48 -0.57 -3.02 16 21 C -0.07 -0.98 9.39 -39.28 -0.37 -1.35 16 22 C -0.19 -2.45 10.11 -39.45 -0.40 -2.85 16 23 C 0.09 1.24 11.18 -17.55 -0.20 1.05 16 24 N -0.49 -8.54 10.36 -13.25 -0.14 -8.67 16 25 C 0.13 2.32 10.63 -17.55 -0.19 2.13 16 26 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 29 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.08 1.45 7.90 -51.93 -0.41 1.04 16 34 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 35 H 0.41 8.32 4.62 -40.82 -0.19 8.14 16 36 H 0.04 0.75 7.15 -51.93 -0.37 0.38 16 37 H 0.04 0.77 6.07 -51.92 -0.32 0.45 16 38 H 0.27 6.27 8.32 -40.82 -0.34 5.93 16 39 H 0.11 2.30 6.33 -51.93 -0.33 1.97 16 40 H 0.09 1.54 8.09 -51.93 -0.42 1.12 16 41 H 0.13 1.77 7.59 -52.49 -0.40 1.37 16 42 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 43 H 0.15 1.61 8.06 -52.48 -0.42 1.18 16 44 H 0.17 3.43 6.67 -52.49 -0.35 3.08 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -26.77 381.31 -12.92 -39.69 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -6.55 Total: 14.08 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.62 Total: 5.15 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.31 Total: -52.22 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Atomic # 16 Polarization: -21.15 SS G_CDS: -5.15 Total: -26.30 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -26.77 -12.92 -39.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247818585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.033 kcal (2) G-P(sol) polarization free energy of solvation -26.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds