Wall clock time and date at job start Sat Apr 11 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81404 * 103.00041 * 2 1 4 4 C 1.53001 * 109.47093 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46939 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.46849 * 179.97438 * 5 4 3 7 7 C 1.34783 * 119.99972 * 179.97438 * 6 5 4 8 8 S 1.71206 * 119.99687 * 4.61665 * 7 6 5 9 9 N 1.34775 * 120.00002 * 184.61501 * 7 6 5 10 10 C 1.46499 * 120.00181 * 2.60417 * 9 7 6 11 11 C 1.50696 * 109.47292 * 260.72941 * 10 9 7 12 12 H 1.08001 * 120.00024 * 239.09023 * 11 10 9 13 13 C 1.37883 * 119.99898 * 59.08600 * 11 10 9 14 14 N 1.31513 * 119.99909 * 5.24625 * 13 11 10 15 15 Si 1.86799 * 119.99586 * 185.23582 * 13 11 10 16 16 H 1.48491 * 109.47600 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46826 * 120.01019 * 15 13 11 18 18 H 1.48505 * 109.46981 * 240.00249 * 15 13 11 19 19 C 1.46498 * 119.99550 * 182.60536 * 9 7 6 20 20 C 1.50703 * 109.47167 * 264.74954 * 19 9 7 21 21 C 1.38676 * 120.41895 * 274.98961 * 20 19 9 22 22 C 1.38621 * 118.41684 * 179.78169 * 21 20 19 23 23 C 1.38223 * 119.16446 * 0.51533 * 22 21 20 24 24 N 1.31852 * 120.76310 * 359.72430 * 23 22 21 25 25 C 1.31885 * 121.72650 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47280 * 300.00139 * 1 2 3 28 28 H 1.09004 * 109.47026 * 59.99893 * 1 2 3 29 29 H 1.09005 * 109.46727 * 59.99876 * 3 2 1 30 30 H 1.08996 * 109.47144 * 300.00431 * 3 2 1 31 31 H 1.08993 * 109.47025 * 60.00494 * 4 3 2 32 32 H 1.09005 * 109.46947 * 300.00296 * 4 3 2 33 33 H 1.09003 * 109.47042 * 60.00341 * 5 4 3 34 34 H 1.08996 * 109.46922 * 300.00268 * 5 4 3 35 35 H 0.96998 * 120.00538 * 0.02562 * 6 5 4 36 36 H 1.08995 * 109.46950 * 140.72768 * 10 9 7 37 37 H 1.09007 * 109.47150 * 20.72878 * 10 9 7 38 38 H 0.97005 * 119.99765 * 175.00211 * 14 13 11 39 39 H 1.08997 * 109.47765 * 24.75439 * 19 9 7 40 40 H 1.08999 * 109.46695 * 144.75428 * 19 9 7 41 41 H 1.08002 * 120.78998 * 0.02562 * 21 20 19 42 42 H 1.08008 * 120.41983 * 180.21855 * 22 21 20 43 43 H 1.08006 * 119.62360 * 179.75030 * 23 22 21 44 44 H 1.07997 * 119.62117 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9400 0.0006 5 6 4.0865 3.4308 0.0013 6 7 5.5422 3.5959 0.0025 7 6 6.0803 4.8316 0.0027 8 16 5.0668 6.2064 0.1209 9 7 7.4160 4.9850 -0.0900 10 6 8.2788 3.8117 -0.2485 11 6 8.8680 3.4373 1.0870 12 1 9.9399 3.4174 1.2179 13 6 8.0386 3.1201 2.1419 14 7 6.7389 3.0435 1.9564 15 14 8.7613 2.7989 3.8342 16 1 10.2378 2.9473 3.7783 17 1 8.2025 3.7745 4.8043 18 1 8.4179 1.4200 4.2655 19 6 8.0051 6.3250 -0.0323 20 6 8.2156 6.8420 -1.4322 21 6 9.3651 6.5156 -2.1358 22 6 9.5139 7.0100 -3.4223 23 6 8.5236 7.8150 -3.9533 24 7 7.4457 8.1088 -3.2531 25 6 7.2683 7.6523 -2.0285 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8031 2.2371 0.8900 30 1 1.8031 2.2372 -0.8899 31 1 4.1616 1.4704 -0.8891 32 1 4.1609 1.4704 0.8909 33 1 3.6673 3.9001 0.8913 34 1 3.6679 3.9006 -0.8886 35 1 6.1188 2.8159 0.0024 36 1 9.0821 4.0432 -0.9480 37 1 7.6913 2.9779 -0.6331 38 1 6.1623 2.7501 2.6792 39 1 7.3335 6.9945 0.5050 40 1 8.9631 6.2787 0.4857 41 1 10.1246 5.8878 -1.6935 42 1 10.3947 6.7731 -4.0008 43 1 8.6337 8.2075 -4.9534 44 1 6.3721 7.9140 -1.4858 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247818585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:40 Heat of formation + Delta-G solvation = 45.515371 kcal Electronic energy + Delta-G solvation = -25022.836767 eV Core-core repulsion = 21613.406418 eV Total energy + Delta-G solvation = -3409.430349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15899 -39.88943 -37.28640 -34.91489 -34.32082 -33.11302 -32.32710 -29.99613 -29.79277 -28.15604 -26.33375 -25.57533 -24.32376 -23.16307 -22.87243 -21.79803 -18.94613 -18.52108 -17.97006 -17.76088 -17.07853 -17.01116 -16.87510 -16.70152 -16.19258 -15.56106 -15.46111 -15.04921 -14.69045 -14.64778 -14.48030 -14.29733 -14.24223 -13.97713 -13.90691 -13.64177 -13.09232 -13.07236 -12.92018 -12.79855 -12.66310 -12.41612 -12.27148 -12.00487 -11.92538 -11.65041 -11.52866 -10.96215 -10.78823 -10.68701 -10.33864 -9.92074 -9.13437 -8.71133 -8.66481 -8.33810 -8.19966 -6.47510 0.20817 0.42166 0.67914 1.06583 1.34685 1.44787 1.48936 1.50330 1.65988 2.21819 2.32957 2.80083 3.00474 3.26644 3.64175 3.86485 3.95403 3.97684 4.01950 4.06063 4.15847 4.21311 4.33682 4.36100 4.43623 4.49394 4.55750 4.61668 4.72234 4.78091 4.88372 4.91258 4.97154 5.02367 5.07625 5.12888 5.26522 5.44530 5.52409 5.67491 5.88125 5.90155 6.12897 6.42212 6.65205 6.98605 7.13033 7.28614 8.66459 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009016 B = 0.003879 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.811199 B = 7216.156978 C = 9359.947323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.313 6.313 3 C -0.064 4.064 4 C -0.096 4.096 5 C 0.146 3.854 6 N -0.626 5.626 7 C 0.612 3.388 8 S -0.810 6.810 9 N -0.537 5.537 10 C 0.218 3.782 11 C -0.549 4.549 12 H 0.069 0.931 13 C 0.043 3.957 14 N -0.881 5.881 15 Si 0.952 3.048 16 H -0.267 1.267 17 H -0.298 1.298 18 H -0.281 1.281 19 C 0.163 3.837 20 C -0.153 4.153 21 C -0.067 4.067 22 C -0.170 4.170 23 C 0.085 3.915 24 N -0.517 5.517 25 C 0.110 3.890 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.414 0.586 36 H 0.062 0.938 37 H 0.032 0.968 38 H 0.267 0.733 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.149 0.851 42 H 0.170 0.830 43 H 0.183 0.817 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 -3.677 -7.661 8.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.087 6.087 3 C -0.213 4.213 4 C -0.135 4.135 5 C 0.019 3.981 6 N -0.257 5.257 7 C 0.244 3.756 8 S -0.684 6.684 9 N -0.243 5.243 10 C 0.097 3.903 11 C -0.588 4.588 12 H 0.087 0.913 13 C -0.161 4.161 14 N -0.519 5.519 15 Si 0.780 3.220 16 H -0.192 1.192 17 H -0.224 1.224 18 H -0.207 1.207 19 C 0.039 3.961 20 C -0.156 4.156 21 C -0.093 4.093 22 C -0.189 4.189 23 C -0.072 4.072 24 N -0.226 5.226 25 C -0.047 4.047 26 H 0.131 0.869 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.260 0.740 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.166 0.834 42 H 0.187 0.813 43 H 0.200 0.800 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.209 -3.281 -7.859 8.798 hybrid contribution 0.604 -0.661 1.801 2.011 sum -1.606 -3.942 -6.058 7.404 Atomic orbital electron populations 1.23428 0.90853 1.07533 1.05911 1.87089 1.11051 1.12382 1.98227 1.23140 0.98518 0.93537 1.06071 1.21275 0.94117 0.94701 1.03447 1.21274 0.79266 0.95557 1.02007 1.45103 1.08097 1.05399 1.67105 1.21227 0.85870 0.89024 0.79472 1.92786 1.60583 1.32072 1.82963 1.47676 1.02441 1.08679 1.65495 1.19550 0.90491 0.83575 0.96636 1.21714 0.93966 1.46820 0.96289 0.91316 1.25554 0.95281 0.93553 1.01718 1.69760 1.03305 1.45183 1.33662 0.85580 0.78861 0.77187 0.80365 1.19151 1.22449 1.20662 1.20335 0.99762 0.82980 0.93060 1.21126 0.96437 0.99856 0.98198 1.21819 0.96247 0.96631 0.94604 1.22445 1.01748 0.98829 0.95874 1.23370 0.88857 0.94589 1.00382 1.67757 1.23850 1.23452 1.07587 1.22974 0.98005 0.92856 0.90865 0.86867 0.89689 0.89362 0.89379 0.88619 0.90712 0.91312 0.92369 0.91548 0.73974 0.91976 0.94987 0.92245 0.89334 0.88867 0.83359 0.81264 0.80045 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 10.76 113.37 1.22 -0.43 16 2 S -0.31 -7.32 22.38 -56.49 -1.26 -8.59 16 3 C -0.06 -1.50 5.94 71.98 0.43 -1.07 16 4 C -0.10 -2.72 5.34 30.60 0.16 -2.55 16 5 C 0.15 5.03 5.14 86.38 0.44 5.47 16 6 N -0.63 -24.88 3.60 -350.16 -1.26 -26.14 16 7 C 0.61 26.91 6.56 179.05 1.17 28.09 16 8 S -0.81 -39.22 25.57 -56.49 -1.44 -40.66 16 9 N -0.54 -21.99 2.29 -718.53 -1.65 -23.64 16 10 C 0.22 8.64 5.59 85.63 0.48 9.12 16 11 C -0.55 -23.95 9.41 25.60 0.24 -23.71 16 12 H 0.07 2.96 7.82 -2.91 -0.02 2.94 16 13 C 0.04 1.95 5.35 84.66 0.45 2.40 16 14 N -0.88 -40.49 8.25 21.45 0.18 -40.32 16 15 Si 0.95 38.61 29.54 68.60 2.03 40.64 16 16 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 17 H -0.30 -12.87 7.11 99.48 0.71 -12.17 16 18 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 19 C 0.16 6.19 5.38 85.63 0.46 6.65 16 20 C -0.15 -5.17 5.47 -19.77 -0.11 -5.28 16 21 C -0.07 -1.80 9.39 22.47 0.21 -1.59 16 22 C -0.17 -3.80 10.11 22.36 0.23 -3.57 16 23 C 0.09 2.17 11.18 84.69 0.95 3.12 16 24 N -0.52 -17.57 10.36 -195.85 -2.03 -19.60 16 25 C 0.11 4.05 10.63 84.67 0.90 4.95 16 26 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.06 2.25 7.90 -2.39 -0.02 2.23 16 34 H 0.07 2.31 8.08 -2.39 -0.02 2.29 16 35 H 0.41 16.72 4.62 -92.71 -0.43 16.29 16 36 H 0.06 2.17 7.15 -2.39 -0.02 2.15 16 37 H 0.03 1.31 6.07 -2.38 -0.01 1.29 16 38 H 0.27 12.43 8.32 -92.70 -0.77 11.66 16 39 H 0.09 3.79 6.33 -2.39 -0.02 3.78 16 40 H 0.09 3.32 8.09 -2.39 -0.02 3.30 16 41 H 0.15 3.48 7.59 -2.91 -0.02 3.45 16 42 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 43 H 0.18 3.23 8.06 -2.91 -0.02 3.20 16 44 H 0.15 6.14 6.67 -2.91 -0.02 6.12 16 Total: -1.00 -58.76 381.31 2.37 -56.39 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: 0.57 Total: 40.32 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 7.24 Total: 21.59 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -4.76 Total: -109.69 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Atomic # 16 Polarization: -46.54 SS G_CDS: -2.71 Total: -49.25 kcal Total: -58.76 2.37 -56.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247818585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.904 kcal (2) G-P(sol) polarization free energy of solvation -58.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds