Wall clock time and date at job start Sat Apr 11 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99968 * 2 1 4 4 H 1.48504 * 109.47155 * 239.99734 * 3 2 1 5 5 H 1.48496 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47056 * 119.99759 * 3 2 1 7 7 C 1.37874 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99787 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99816 * 274.99864 * 10 9 7 12 12 C 1.50693 * 109.47275 * 274.99901 * 11 10 9 13 13 C 1.38239 * 120.00224 * 269.72828 * 12 11 10 14 14 C 1.38230 * 119.99998 * 179.76782 * 13 12 11 15 15 C 1.38236 * 120.00403 * 0.50512 * 14 13 12 16 16 C 1.38234 * 119.99545 * 359.74930 * 15 14 13 17 17 C 1.38233 * 120.00280 * 90.00561 * 12 11 10 18 18 S 1.65594 * 119.99569 * 94.99992 * 10 9 7 19 19 O 1.42103 * 104.27375 * 153.93042 * 18 10 9 20 20 O 1.42101 * 104.28151 * 26.07375 * 18 10 9 21 21 C 1.81399 * 104.45139 * 269.99802 * 18 10 9 22 22 C 1.53175 * 109.54527 * 304.56316 * 21 18 10 23 23 C 1.53094 * 109.16661 * 183.15111 * 22 21 18 24 24 O 1.42898 * 109.41211 * 57.60371 * 23 22 21 25 25 C 1.42897 * 114.10001 * 298.84343 * 24 23 22 26 26 C 1.53089 * 109.41656 * 61.16248 * 25 24 23 27 27 H 0.96998 * 119.99617 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47268 * 59.99434 * 9 7 2 29 29 H 1.08995 * 109.47055 * 299.99607 * 9 7 2 30 30 H 1.09001 * 109.47630 * 35.00247 * 11 10 9 31 31 H 1.09001 * 109.46670 * 155.00035 * 11 10 9 32 32 H 1.08007 * 119.99415 * 359.97438 * 13 12 11 33 33 H 1.08003 * 119.99727 * 180.23367 * 14 13 12 34 34 H 1.07994 * 120.00321 * 179.72468 * 15 14 13 35 35 H 1.08000 * 119.99901 * 179.97438 * 16 15 14 36 36 H 1.08001 * 119.99751 * 359.97438 * 17 12 11 37 37 H 1.09004 * 109.61268 * 64.77837 * 21 18 10 38 38 H 1.09004 * 109.52259 * 303.05376 * 22 21 18 39 39 H 1.09006 * 109.52330 * 63.24210 * 22 21 18 40 40 H 1.09006 * 109.47665 * 297.62062 * 23 22 21 41 41 H 1.08993 * 109.47955 * 177.58818 * 23 22 21 42 42 H 1.09002 * 109.48425 * 301.17758 * 25 24 23 43 43 H 1.09001 * 109.49443 * 181.15303 * 25 24 23 44 44 H 1.08997 * 109.52675 * 182.48845 * 26 25 24 45 45 H 1.08995 * 109.52428 * 62.29514 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7631 -4.0976 -1.2634 12 6 1.8179 -5.0951 -1.8817 13 6 1.9405 -6.4396 -1.5849 14 6 1.0704 -7.3540 -2.1484 15 6 0.0842 -6.9253 -3.0169 16 6 -0.0351 -5.5814 -3.3179 17 6 0.8317 -4.6663 -2.7504 18 16 2.6461 -4.3232 1.4292 19 8 3.0187 -5.6446 1.0627 20 8 1.5445 -4.0861 2.2950 21 6 4.0973 -3.3803 1.9729 22 6 5.1582 -3.3903 0.8680 23 6 6.4086 -2.6600 1.3652 24 8 6.8839 -3.2894 2.5568 25 6 5.9517 -3.2682 3.6396 26 6 4.6831 -4.0229 3.2339 27 1 -0.4849 0.8401 0.0004 28 1 0.6247 -2.5570 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.9025 -3.2583 -1.9448 31 1 3.7242 -4.5761 -1.0750 32 1 2.7142 -6.7752 -0.9100 33 1 1.1639 -8.4040 -1.9134 34 1 -0.5928 -7.6402 -3.4607 35 1 -0.8054 -5.2464 -3.9968 36 1 0.7384 -3.6164 -2.9855 37 1 3.8058 -2.3524 2.1891 38 1 5.4134 -4.4200 0.6174 39 1 4.7686 -2.8851 -0.0158 40 1 6.1616 -1.6197 1.5772 41 1 7.1824 -2.7012 0.5988 42 1 5.6988 -2.2359 3.8815 43 1 6.3964 -3.7473 4.5119 44 1 3.9536 -3.9702 4.0420 45 1 4.9286 -5.0653 3.0310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259906937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:51 Heat of formation + Delta-G solvation = -98.822358 kcal Electronic energy + Delta-G solvation = -29019.115101 eV Core-core repulsion = 25128.380176 eV Total energy + Delta-G solvation = -3890.734925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.19484 -38.93590 -36.59931 -35.79862 -35.35074 -33.78155 -32.78765 -31.19585 -30.83831 -30.50038 -27.39566 -25.41576 -25.08862 -23.75607 -22.54385 -22.00440 -21.02064 -20.38824 -18.30880 -17.19325 -16.92673 -16.51056 -16.16836 -15.95714 -15.75824 -15.33183 -14.89734 -14.82458 -14.59672 -14.55643 -13.89502 -13.85929 -13.66741 -13.09062 -12.98384 -12.47233 -12.36914 -12.30146 -12.10522 -11.87416 -11.70565 -11.55020 -11.42976 -11.25295 -11.20666 -11.10466 -10.96397 -10.84109 -10.83119 -10.56501 -10.43848 -10.23456 -10.09309 -9.88342 -9.34765 -8.58139 -8.52326 -8.43038 -8.07648 -6.18003 -4.26323 0.80534 1.69283 1.79197 3.18985 3.23668 3.26269 3.30829 3.84870 4.17781 4.24896 4.31333 4.41775 4.57812 4.87510 4.97988 5.10390 5.14519 5.16612 5.20436 5.21329 5.32990 5.42112 5.47996 5.49530 5.54149 5.60741 5.65721 5.71750 5.87178 5.90461 5.94812 5.97490 6.10172 6.15327 6.27915 6.37058 6.52449 6.82564 6.85682 7.06586 7.14109 7.31630 7.36654 7.38961 7.57731 7.78092 8.06722 8.78119 9.40325 10.89564 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008278 B = 0.006151 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.634145 B = 4551.353635 C = 6862.562341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.244 3.756 10 N -0.976 5.976 11 C 0.169 3.831 12 C -0.100 4.100 13 C -0.101 4.101 14 C -0.132 4.132 15 C -0.125 4.125 16 C -0.130 4.130 17 C -0.096 4.096 18 S 2.612 3.388 19 O -0.970 6.970 20 O -0.955 6.955 21 C -0.598 4.598 22 C -0.137 4.137 23 C 0.068 3.932 24 O -0.384 6.384 25 C 0.071 3.929 26 C -0.144 4.144 27 H 0.266 0.734 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.146 0.854 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.533 -8.510 -1.015 12.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.587 4.587 8 H 0.080 0.920 9 C 0.122 3.878 10 N -0.813 5.813 11 C 0.043 3.957 12 C -0.102 4.102 13 C -0.120 4.120 14 C -0.150 4.150 15 C -0.143 4.143 16 C -0.148 4.148 17 C -0.114 4.114 18 S 2.705 3.295 19 O -0.960 6.960 20 O -0.945 6.945 21 C -0.705 4.705 22 C -0.175 4.175 23 C -0.009 4.009 24 O -0.302 6.302 25 C -0.007 4.007 26 C -0.183 4.183 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.164 0.836 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.074 0.926 43 H 0.115 0.885 44 H 0.103 0.897 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.093 -9.158 -0.576 12.235 hybrid contribution 0.332 1.797 -0.094 1.830 sum 8.425 -7.361 -0.670 11.208 Atomic orbital electron populations 1.69925 1.06014 1.27326 1.49024 1.24941 0.94794 0.99119 0.94818 0.86672 0.79665 0.83115 0.78637 1.20112 1.21117 1.20210 1.21526 0.93431 0.90870 1.52885 0.92016 1.19238 0.87360 0.81280 0.99873 1.57393 1.57039 1.49075 1.17821 1.20049 0.93543 0.95501 0.86599 1.20388 0.98057 0.94573 0.97184 1.21417 0.99523 0.92729 0.98349 1.21103 0.96290 0.99372 0.98271 1.21086 0.98557 0.95837 0.98867 1.21098 0.99537 0.93363 1.00804 1.21192 0.94288 0.99843 0.96111 1.04931 0.75693 0.74587 0.74243 1.93484 1.85331 1.34838 1.82353 1.93564 1.48054 1.86202 1.66730 1.30671 1.18603 1.16660 1.04587 1.21993 0.95217 1.03125 0.97182 1.22509 0.95684 0.95709 0.87035 1.87890 1.40959 1.79651 1.21749 1.22442 0.88956 0.99706 0.89577 1.21996 0.99506 1.00854 0.95906 0.92436 0.94019 0.92965 0.89153 0.90620 0.84553 0.86604 0.86777 0.86487 0.85609 0.83649 0.89922 0.88487 0.92587 0.88486 0.92646 0.88534 0.89671 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.53 13.29 55.43 0.74 -23.80 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.55 -13.44 9.38 -34.44 -0.32 -13.77 16 8 H 0.06 1.40 7.76 -52.49 -0.41 1.00 16 9 C 0.24 5.79 5.41 -5.19 -0.03 5.76 16 10 N -0.98 -18.94 2.35 -116.95 -0.28 -19.21 16 11 C 0.17 2.80 4.40 -5.20 -0.02 2.77 16 12 C -0.10 -1.69 5.46 -104.63 -0.57 -2.26 16 13 C -0.10 -1.65 9.12 -39.58 -0.36 -2.01 16 14 C -0.13 -1.93 10.05 -39.59 -0.40 -2.33 16 15 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 16 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 17 C -0.10 -1.57 9.37 -39.58 -0.37 -1.94 16 18 S 2.61 48.81 4.83 -107.50 -0.52 48.30 16 19 O -0.97 -18.01 14.83 -57.54 -0.85 -18.86 16 20 O -0.96 -21.75 16.53 -57.54 -0.95 -22.70 16 21 C -0.60 -9.16 2.96 -26.55 -0.08 -9.24 16 22 C -0.14 -1.84 4.38 -26.59 -0.12 -1.96 16 23 C 0.07 0.85 6.84 37.21 0.25 1.10 16 24 O -0.38 -5.14 10.76 -35.23 -0.38 -5.52 16 25 C 0.07 0.84 6.84 37.20 0.25 1.10 16 26 C -0.14 -1.89 5.43 -26.59 -0.14 -2.04 16 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.04 1.03 7.60 -51.93 -0.39 0.64 16 29 H 0.05 1.40 6.82 -51.93 -0.35 1.05 16 30 H 0.09 1.44 8.05 -51.93 -0.42 1.02 16 31 H 0.08 1.07 6.61 -51.93 -0.34 0.72 16 32 H 0.14 2.22 6.51 -52.48 -0.34 1.88 16 33 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.13 2.06 7.89 -52.49 -0.41 1.65 16 37 H 0.15 2.35 8.14 -51.92 -0.42 1.92 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.10 1.29 6.84 -51.93 -0.36 0.94 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -31.17 374.33 -11.23 -42.40 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.81 Total: 6.54 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -2.80 Total: -27.61 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.46 Total: -43.01 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -2.18 Total: -47.09 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 48.81 SS G_CDS: -0.52 Total: 48.30 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.17 -11.23 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259906937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.423 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds