Wall clock time and date at job start Sat Apr 11 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99968 * 2 1 4 4 H 1.48504 * 109.47155 * 239.99734 * 3 2 1 5 5 H 1.48496 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47056 * 119.99759 * 3 2 1 7 7 C 1.37874 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99787 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99816 * 274.99864 * 10 9 7 12 12 C 1.50693 * 109.47275 * 274.99901 * 11 10 9 13 13 C 1.38239 * 120.00224 * 269.72828 * 12 11 10 14 14 C 1.38230 * 119.99998 * 179.76782 * 13 12 11 15 15 C 1.38236 * 120.00403 * 0.50512 * 14 13 12 16 16 C 1.38234 * 119.99545 * 359.74930 * 15 14 13 17 17 C 1.38233 * 120.00280 * 90.00561 * 12 11 10 18 18 S 1.65594 * 119.99569 * 94.99992 * 10 9 7 19 19 O 1.42103 * 104.27375 * 153.93042 * 18 10 9 20 20 O 1.42101 * 104.28151 * 26.07375 * 18 10 9 21 21 C 1.81399 * 104.45139 * 269.99802 * 18 10 9 22 22 C 1.53175 * 109.54527 * 304.56316 * 21 18 10 23 23 C 1.53094 * 109.16661 * 183.15111 * 22 21 18 24 24 O 1.42898 * 109.41211 * 57.60371 * 23 22 21 25 25 C 1.42897 * 114.10001 * 298.84343 * 24 23 22 26 26 C 1.53089 * 109.41656 * 61.16248 * 25 24 23 27 27 H 0.96998 * 119.99617 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47268 * 59.99434 * 9 7 2 29 29 H 1.08995 * 109.47055 * 299.99607 * 9 7 2 30 30 H 1.09001 * 109.47630 * 35.00247 * 11 10 9 31 31 H 1.09001 * 109.46670 * 155.00035 * 11 10 9 32 32 H 1.08007 * 119.99415 * 359.97438 * 13 12 11 33 33 H 1.08003 * 119.99727 * 180.23367 * 14 13 12 34 34 H 1.07994 * 120.00321 * 179.72468 * 15 14 13 35 35 H 1.08000 * 119.99901 * 179.97438 * 16 15 14 36 36 H 1.08001 * 119.99751 * 359.97438 * 17 12 11 37 37 H 1.09004 * 109.61268 * 64.77837 * 21 18 10 38 38 H 1.09004 * 109.52259 * 303.05376 * 22 21 18 39 39 H 1.09006 * 109.52330 * 63.24210 * 22 21 18 40 40 H 1.09006 * 109.47665 * 297.62062 * 23 22 21 41 41 H 1.08993 * 109.47955 * 177.58818 * 23 22 21 42 42 H 1.09002 * 109.48425 * 301.17758 * 25 24 23 43 43 H 1.09001 * 109.49443 * 181.15303 * 25 24 23 44 44 H 1.08997 * 109.52675 * 182.48845 * 26 25 24 45 45 H 1.08995 * 109.52428 * 62.29514 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7631 -4.0976 -1.2634 12 6 1.8179 -5.0951 -1.8817 13 6 1.9405 -6.4396 -1.5849 14 6 1.0704 -7.3540 -2.1484 15 6 0.0842 -6.9253 -3.0169 16 6 -0.0351 -5.5814 -3.3179 17 6 0.8317 -4.6663 -2.7504 18 16 2.6461 -4.3232 1.4292 19 8 3.0187 -5.6446 1.0627 20 8 1.5445 -4.0861 2.2950 21 6 4.0973 -3.3803 1.9729 22 6 5.1582 -3.3903 0.8680 23 6 6.4086 -2.6600 1.3652 24 8 6.8839 -3.2894 2.5568 25 6 5.9517 -3.2682 3.6396 26 6 4.6831 -4.0229 3.2339 27 1 -0.4849 0.8401 0.0004 28 1 0.6247 -2.5570 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.9025 -3.2583 -1.9448 31 1 3.7242 -4.5761 -1.0750 32 1 2.7142 -6.7752 -0.9100 33 1 1.1639 -8.4040 -1.9134 34 1 -0.5928 -7.6402 -3.4607 35 1 -0.8054 -5.2464 -3.9968 36 1 0.7384 -3.6164 -2.9855 37 1 3.8058 -2.3524 2.1891 38 1 5.4134 -4.4200 0.6174 39 1 4.7686 -2.8851 -0.0158 40 1 6.1616 -1.6197 1.5772 41 1 7.1824 -2.7012 0.5988 42 1 5.6988 -2.2359 3.8815 43 1 6.3964 -3.7473 4.5119 44 1 3.9536 -3.9702 4.0420 45 1 4.9286 -5.0653 3.0310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259906937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:50 Heat of formation + Delta-G solvation = -118.055484 kcal Electronic energy + Delta-G solvation = -29019.949112 eV Core-core repulsion = 25128.380176 eV Total energy + Delta-G solvation = -3891.568936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.24222 -40.12996 -38.17098 -37.33863 -36.93284 -34.89906 -34.65398 -32.32118 -32.10827 -31.69347 -29.13960 -26.64716 -26.46531 -24.84679 -24.15589 -23.30358 -22.25316 -21.50891 -19.80171 -18.68447 -18.53610 -17.96069 -17.56555 -17.20776 -16.94644 -16.61614 -16.37958 -16.06541 -15.85502 -15.78571 -15.26381 -15.07257 -14.92767 -14.57047 -14.20103 -13.99619 -13.85030 -13.50846 -13.39869 -13.24362 -13.15102 -13.03690 -12.97083 -12.88100 -12.54942 -12.42952 -12.40053 -12.24306 -12.05902 -11.98645 -11.86554 -11.66985 -11.64690 -11.21674 -10.56861 -10.49384 -9.77589 -9.73451 -9.57691 -8.15678 -6.30676 -0.66609 0.47733 0.57792 1.44190 1.45038 1.52474 1.79721 2.41960 2.86431 2.94313 2.95642 3.13975 3.16087 3.36950 3.62889 3.84585 3.94063 4.00749 4.01830 4.19580 4.23773 4.25529 4.38103 4.41994 4.48901 4.55653 4.66329 4.68614 4.71934 4.75069 4.80900 4.84580 4.92933 4.98938 5.05936 5.18564 5.26555 5.34707 5.47851 5.64537 5.67073 5.75189 5.83977 5.91636 6.10425 6.19440 6.20701 6.82578 7.40217 8.92165 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008278 B = 0.006151 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.634145 B = 4551.353635 C = 6862.562341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.263 3.737 10 N -0.980 5.980 11 C 0.166 3.834 12 C -0.119 4.119 13 C -0.118 4.118 14 C -0.136 4.136 15 C -0.122 4.122 16 C -0.135 4.135 17 C -0.117 4.117 18 S 2.606 3.394 19 O -0.972 6.972 20 O -1.006 7.006 21 C -0.576 4.576 22 C -0.140 4.140 23 C 0.067 3.933 24 O -0.393 6.393 25 C 0.070 3.930 26 C -0.150 4.150 27 H 0.264 0.736 28 H 0.021 0.979 29 H 0.012 0.988 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.115 0.885 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.122 0.878 42 H 0.060 0.940 43 H 0.124 0.876 44 H 0.091 0.909 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.926 -8.964 -1.331 14.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.187 1.187 5 H -0.218 1.218 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.139 3.861 10 N -0.816 5.816 11 C 0.041 3.959 12 C -0.121 4.121 13 C -0.136 4.136 14 C -0.154 4.154 15 C -0.140 4.140 16 C -0.153 4.153 17 C -0.136 4.136 18 S 2.705 3.295 19 O -0.962 6.962 20 O -0.997 6.997 21 C -0.688 4.688 22 C -0.178 4.178 23 C -0.010 4.010 24 O -0.311 6.311 25 C -0.008 4.008 26 C -0.190 4.190 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.030 0.970 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.151 0.849 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.156 0.844 36 H 0.133 0.867 37 H 0.157 0.843 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.078 0.922 43 H 0.142 0.858 44 H 0.110 0.890 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.471 -9.658 -0.920 14.275 hybrid contribution -0.406 1.824 0.008 1.869 sum 10.065 -7.834 -0.913 12.787 Atomic orbital electron populations 1.70081 1.07856 1.28004 1.50880 1.25822 0.95467 1.02840 0.94668 0.85631 0.78357 0.78508 0.79363 1.18695 1.21769 1.19108 1.21892 0.94368 0.90929 1.51237 0.90094 1.18695 0.87628 0.82825 0.96925 1.57217 1.57037 1.47934 1.19396 1.20250 0.94478 0.95779 0.85432 1.20487 0.98664 0.95085 0.97895 1.21512 1.00313 0.92835 0.98968 1.21472 0.95714 1.00463 0.97703 1.21476 0.98480 0.95992 0.98068 1.21413 0.99412 0.93732 1.00717 1.21272 0.95306 0.99836 0.97138 1.04959 0.76229 0.74867 0.73488 1.93469 1.85385 1.35218 1.82177 1.93500 1.51456 1.86873 1.67829 1.30414 1.16671 1.15168 1.06576 1.22122 0.95137 1.04177 0.96396 1.22630 0.95602 0.95308 0.87464 1.87889 1.41365 1.79721 1.22162 1.22607 0.88059 1.00050 0.90070 1.22178 1.00518 1.01388 0.94889 0.92683 0.96133 0.97031 0.88997 0.88118 0.84895 0.84021 0.83440 0.84444 0.86743 0.84337 0.88914 0.88393 0.92587 0.86033 0.92218 0.85811 0.89014 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.21 13.29 21.45 0.28 -52.92 16 2 C 0.01 0.61 5.46 84.65 0.46 1.07 16 3 Si 0.96 40.49 29.54 68.60 2.03 42.52 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.55 -27.10 9.38 25.60 0.24 -26.86 16 8 H 0.08 3.61 7.76 -2.91 -0.02 3.59 16 9 C 0.26 13.05 5.41 85.63 0.46 13.51 16 10 N -0.98 -39.03 2.35 -523.91 -1.23 -40.26 16 11 C 0.17 5.53 4.40 85.63 0.38 5.90 16 12 C -0.12 -4.09 5.46 -19.87 -0.11 -4.20 16 13 C -0.12 -3.79 9.12 22.27 0.20 -3.59 16 14 C -0.14 -3.75 10.05 22.27 0.22 -3.52 16 15 C -0.12 -3.15 10.05 22.27 0.22 -2.92 16 16 C -0.13 -3.87 10.05 22.27 0.22 -3.64 16 17 C -0.12 -3.93 9.37 22.27 0.21 -3.73 16 18 S 2.61 98.98 4.83 -56.49 -0.27 98.71 16 19 O -0.97 -36.04 14.83 -127.65 -1.89 -37.94 16 20 O -1.01 -47.98 16.53 -127.65 -2.11 -50.09 16 21 C -0.58 -17.04 2.96 30.71 0.09 -16.94 16 22 C -0.14 -3.45 4.38 30.68 0.13 -3.32 16 23 C 0.07 1.46 6.84 72.01 0.49 1.96 16 24 O -0.39 -9.24 10.76 -148.98 -1.60 -10.84 16 25 C 0.07 1.46 6.84 72.01 0.49 1.95 16 26 C -0.15 -3.69 5.43 30.68 0.17 -3.53 16 27 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.02 1.09 7.60 -2.38 -0.02 1.07 16 29 H 0.01 0.67 6.82 -2.39 -0.02 0.65 16 30 H 0.09 2.98 8.05 -2.39 -0.02 2.96 16 31 H 0.10 2.77 6.61 -2.39 -0.02 2.76 16 32 H 0.13 4.29 6.51 -2.91 -0.02 4.27 16 33 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 34 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 35 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.11 3.99 7.89 -2.91 -0.02 3.97 16 37 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 38 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.10 2.41 6.84 -2.38 -0.02 2.39 16 40 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -69.07 374.33 0.07 -69.00 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.97 Total: 29.70 kcal Atomic # 6 Polarization: -51.77 SS G_CDS: 3.89 Total: -47.87 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -0.95 Total: -93.18 kcal Atomic # 8 Polarization: -93.26 SS G_CDS: -5.61 Total: -98.87 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 16 Polarization: 98.98 SS G_CDS: -0.27 Total: 98.71 kcal Total: -69.07 0.07 -69.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259906937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.057 kcal (2) G-P(sol) polarization free energy of solvation -69.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds