Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00347 * 2 1 4 4 C 1.50711 * 109.46893 * 274.99700 * 3 2 1 5 5 H 1.07997 * 119.99868 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99774 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99932 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00049 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.47068 * 90.00245 * 8 6 4 10 10 H 1.48500 * 109.47052 * 209.99944 * 8 6 4 11 11 H 1.48499 * 109.47435 * 330.00490 * 8 6 4 12 12 S 1.65607 * 119.99561 * 179.97438 * 2 1 3 13 13 O 1.42092 * 106.40356 * 336.45656 * 12 2 1 14 14 O 1.42105 * 106.39741 * 203.53986 * 12 2 1 15 15 C 1.76196 * 107.21873 * 90.00204 * 12 2 1 16 16 C 1.38296 * 120.01231 * 89.99771 * 15 12 2 17 17 C 1.37965 * 119.95831 * 180.09811 * 16 15 12 18 18 C 1.39142 * 120.21780 * 359.97438 * 17 16 15 19 19 C 1.38313 * 119.71292 * 359.90249 * 18 17 16 20 20 C 1.38105 * 120.00908 * 270.01925 * 15 12 2 21 21 C 1.50766 * 121.45596 * 180.27714 * 19 18 17 22 22 C 1.53080 * 109.64138 * 342.23753 * 21 19 18 23 23 C 1.53409 * 108.29238 * 48.20930 * 22 21 19 24 24 C 1.53002 * 109.68357 * 54.97257 * 23 22 21 25 25 C 1.52994 * 109.68310 * 175.53269 * 23 22 21 26 26 O 1.35850 * 118.49776 * 179.81928 * 18 17 16 27 27 H 1.08998 * 109.47160 * 270.00461 * 1 2 3 28 28 H 1.09001 * 109.46834 * 30.00454 * 1 2 3 29 29 H 1.09004 * 109.47501 * 149.99937 * 1 2 3 30 30 H 1.08991 * 109.47375 * 34.99427 * 3 2 1 31 31 H 1.08996 * 109.47368 * 155.00258 * 3 2 1 32 32 H 0.97006 * 120.00478 * 179.97438 * 7 6 4 33 33 H 1.08003 * 120.01568 * 0.07735 * 16 15 12 34 34 H 1.08000 * 119.89067 * 180.02562 * 17 16 15 35 35 H 1.07999 * 119.83958 * 359.96935 * 20 15 12 36 36 H 1.09002 * 109.43846 * 222.19340 * 21 19 18 37 37 H 1.08999 * 109.43358 * 102.27743 * 21 19 18 38 38 H 1.09000 * 109.69568 * 167.91301 * 22 21 19 39 39 H 1.08996 * 109.69683 * 288.46902 * 22 21 19 40 40 H 1.09006 * 109.46844 * 59.99618 * 24 23 22 41 41 H 1.08991 * 109.47309 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.47364 * 300.00307 * 24 23 22 43 43 H 1.08994 * 109.47443 * 59.99767 * 25 23 22 44 44 H 1.08994 * 109.47382 * 180.02562 * 25 23 22 45 45 H 1.09004 * 109.47371 * 299.99968 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3415 1.7655 -1.4155 5 1 1.9283 1.1937 -2.2332 6 6 2.9999 2.9507 -1.6665 7 7 3.1251 3.3845 -2.9016 8 14 3.7128 3.9408 -0.2519 9 1 5.1100 3.5063 0.0017 10 1 3.6989 5.3840 -0.6015 11 1 2.8962 3.7191 0.9685 12 16 2.2929 -1.4343 0.0006 13 8 1.4113 -2.4063 0.5456 14 8 3.5759 -1.1566 0.5450 15 6 2.5537 -1.8867 -1.6821 16 6 3.6932 -1.4656 -2.3430 17 6 3.8953 -1.8188 -3.6613 18 6 2.9562 -2.5986 -4.3292 19 6 1.8186 -3.0206 -3.6653 20 6 1.6200 -2.6616 -2.3417 21 6 0.7788 -3.8717 -4.3490 22 6 0.9573 -3.7821 -5.8667 23 6 2.4406 -4.0014 -6.1908 24 6 2.9102 -5.3256 -5.5849 25 6 2.6381 -4.0291 -7.7077 26 8 3.1887 -2.9227 -5.6279 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6502 2.0042 0.5893 31 1 3.1858 1.1176 0.4342 32 1 3.5880 4.2185 -3.0782 33 1 4.4242 -0.8603 -1.8275 34 1 4.7858 -1.4897 -4.1762 35 1 0.7310 -2.9893 -1.8234 36 1 -0.2157 -3.5160 -4.0791 37 1 0.8921 -4.9080 -4.0309 38 1 0.3572 -4.5511 -6.3532 39 1 0.6459 -2.7976 -6.2158 40 1 2.3241 -6.1443 -6.0025 41 1 3.9640 -5.4781 -5.8176 42 1 2.7768 -5.2980 -4.5035 43 1 2.3113 -3.0807 -8.1340 44 1 3.6927 -4.1855 -7.9340 45 1 2.0506 -4.8414 -8.1358 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260713138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = -89.857578 kcal Electronic energy + Delta-G solvation = -28633.026408 eV Core-core repulsion = 24742.680225 eV Total energy + Delta-G solvation = -3890.346183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01906 -37.79440 -36.71892 -35.64394 -35.27819 -34.95349 -32.62257 -32.43023 -30.25255 -28.55824 -28.38702 -27.66332 -25.18319 -24.22256 -22.95117 -22.49564 -21.86543 -19.56471 -18.13773 -17.66308 -17.13196 -16.80306 -16.58446 -16.31781 -15.43396 -15.33636 -15.04582 -14.44613 -14.30153 -14.22789 -13.72465 -13.37969 -13.23676 -13.17480 -12.99631 -12.66417 -12.59269 -12.45844 -12.41078 -12.38054 -12.11950 -12.05549 -11.81473 -11.55207 -11.41265 -11.36041 -11.21672 -11.03376 -10.82516 -10.76890 -10.52367 -10.34775 -10.23905 -10.19948 -9.58309 -8.64490 -8.61849 -8.31616 -8.05140 -6.14085 -4.15296 0.97253 1.29190 1.53639 3.09050 3.27324 3.33964 3.37159 3.50717 3.82805 4.33102 4.36140 4.38214 4.45099 4.54523 4.71432 4.81099 4.93116 5.09876 5.14959 5.19052 5.28485 5.32511 5.42231 5.46199 5.49648 5.50810 5.57856 5.65668 5.70035 5.79490 5.88841 5.97573 6.00416 6.03467 6.16709 6.18963 6.23717 6.43866 6.43926 6.49847 6.82730 6.93098 7.08969 7.34827 7.49576 7.53969 8.42015 8.90560 9.45896 10.98203 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.004228 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.413952 B = 6621.195289 C = 7772.817838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.982 5.982 3 C 0.212 3.788 4 C -0.543 4.543 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.867 3.133 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.263 1.263 12 S 2.697 3.303 13 O -0.978 6.978 14 O -0.962 6.962 15 C -0.695 4.695 16 C 0.038 3.962 17 C -0.167 4.167 18 C 0.185 3.815 19 C -0.190 4.190 20 C 0.012 3.988 21 C -0.075 4.075 22 C -0.148 4.148 23 C 0.109 3.891 24 C -0.176 4.176 25 C -0.138 4.138 26 O -0.305 6.305 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.265 0.735 33 H 0.148 0.852 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 -15.535 -5.783 17.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.821 5.821 3 C 0.088 3.912 4 C -0.582 4.582 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.694 3.306 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.187 1.187 12 S 2.787 3.213 13 O -0.969 6.969 14 O -0.952 6.952 15 C -0.781 4.781 16 C 0.018 3.982 17 C -0.187 4.187 18 C 0.139 3.861 19 C -0.192 4.192 20 C -0.007 4.007 21 C -0.112 4.112 22 C -0.185 4.185 23 C 0.072 3.928 24 C -0.233 4.233 25 C -0.195 4.195 26 O -0.219 6.219 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.166 0.834 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.683 -15.747 -5.312 17.022 hybrid contribution 0.170 0.827 -0.291 0.893 sum -3.513 -14.920 -5.602 16.319 Atomic orbital electron populations 1.21300 0.79363 1.02719 1.00877 1.57069 1.14322 1.21903 1.88796 1.19667 0.92226 0.80675 0.98600 1.21463 1.37276 1.07616 0.91876 0.90119 1.24843 0.95293 0.97061 0.95399 1.69900 1.42275 1.21929 1.18876 0.86981 0.80638 0.79715 0.83297 1.19616 1.21057 1.18732 1.01655 0.73193 0.72410 0.74058 1.93503 1.66510 1.59876 1.76998 1.93529 1.40413 1.84613 1.76689 1.30882 1.04663 1.14876 1.27725 1.20691 0.93986 0.90602 0.92888 1.20669 1.00134 1.03154 0.94697 1.18821 0.92025 0.92565 0.82685 1.19727 0.96997 1.06699 0.95788 1.20556 0.96348 0.91224 0.92609 1.20479 0.97688 0.99129 0.93902 1.22274 0.95818 1.03760 0.96675 1.21911 0.90832 0.85752 0.94343 1.22439 1.02390 0.96296 1.02224 1.21777 1.03173 1.03122 0.91446 1.86066 1.62544 1.50237 1.23041 0.93329 0.90409 0.92478 0.94251 0.93665 0.92511 0.83429 0.84602 0.84718 0.89921 0.90380 0.89826 0.90231 0.90938 0.91508 0.91374 0.91324 0.91386 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.73 10.31 59.85 0.62 2.34 16 2 N -0.98 -19.87 3.17 -123.06 -0.39 -20.26 16 3 C 0.21 4.91 4.48 -5.19 -0.02 4.88 16 4 C -0.54 -14.43 9.94 -34.44 -0.34 -14.77 16 5 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 6 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 7 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 8 Si 0.87 20.62 27.47 -169.99 -4.67 15.95 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 12 S 2.70 53.47 5.65 -107.50 -0.61 52.86 16 13 O -0.98 -19.36 16.35 -57.17 -0.93 -20.29 16 14 O -0.96 -21.30 15.84 -57.17 -0.91 -22.21 16 15 C -0.69 -13.03 5.97 -39.61 -0.24 -13.26 16 16 C 0.04 0.72 9.52 -39.66 -0.38 0.34 16 17 C -0.17 -2.96 9.94 -39.35 -0.39 -3.36 16 18 C 0.19 3.04 6.02 -39.22 -0.24 2.80 16 19 C -0.19 -2.90 5.17 -104.44 -0.54 -3.44 16 20 C 0.01 0.20 9.15 -39.51 -0.36 -0.16 16 21 C -0.08 -0.84 5.21 -27.81 -0.14 -0.99 16 22 C -0.15 -1.48 5.10 -26.48 -0.13 -1.61 16 23 C 0.11 1.17 1.13 -90.41 -0.10 1.07 16 24 C -0.18 -1.65 8.15 37.16 0.30 -1.35 16 25 C -0.14 -1.16 8.88 37.15 0.33 -0.83 16 26 O -0.30 -4.51 9.67 -19.27 -0.19 -4.70 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.29 8.07 -51.93 -0.42 0.88 16 29 H 0.06 0.83 7.79 -51.93 -0.40 0.43 16 30 H 0.04 0.88 7.16 -51.93 -0.37 0.51 16 31 H 0.05 1.07 6.34 -51.93 -0.33 0.75 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.15 2.86 7.62 -52.48 -0.40 2.46 16 34 H 0.14 2.20 8.06 -52.49 -0.42 1.78 16 35 H 0.14 1.94 7.61 -52.49 -0.40 1.54 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.75 7.00 -51.93 -0.36 0.39 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.72 5.88 -51.93 -0.31 0.42 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -32.73 372.46 -9.85 -42.58 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.81 Total: 2.13 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -1.74 Total: -26.29 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.38 Total: -45.65 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -2.03 Total: -47.20 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Atomic # 16 Polarization: 53.47 SS G_CDS: -0.61 Total: 52.86 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.73 -9.85 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260713138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.276 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds