Wall clock time and date at job start Sat Apr 11 2020 05:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00347 * 2 1 4 4 C 1.50711 * 109.46893 * 274.99700 * 3 2 1 5 5 H 1.07997 * 119.99868 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99774 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99932 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00049 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.47068 * 90.00245 * 8 6 4 10 10 H 1.48500 * 109.47052 * 209.99944 * 8 6 4 11 11 H 1.48499 * 109.47435 * 330.00490 * 8 6 4 12 12 S 1.65607 * 119.99561 * 179.97438 * 2 1 3 13 13 O 1.42092 * 106.40356 * 336.45656 * 12 2 1 14 14 O 1.42105 * 106.39741 * 203.53986 * 12 2 1 15 15 C 1.76196 * 107.21873 * 90.00204 * 12 2 1 16 16 C 1.38296 * 120.01231 * 89.99771 * 15 12 2 17 17 C 1.37965 * 119.95831 * 180.09811 * 16 15 12 18 18 C 1.39142 * 120.21780 * 359.97438 * 17 16 15 19 19 C 1.38313 * 119.71292 * 359.90249 * 18 17 16 20 20 C 1.38105 * 120.00908 * 270.01925 * 15 12 2 21 21 C 1.50766 * 121.45596 * 180.27714 * 19 18 17 22 22 C 1.53080 * 109.64138 * 342.23753 * 21 19 18 23 23 C 1.53409 * 108.29238 * 48.20930 * 22 21 19 24 24 C 1.53002 * 109.68357 * 54.97257 * 23 22 21 25 25 C 1.52994 * 109.68310 * 175.53269 * 23 22 21 26 26 O 1.35850 * 118.49776 * 179.81928 * 18 17 16 27 27 H 1.08998 * 109.47160 * 270.00461 * 1 2 3 28 28 H 1.09001 * 109.46834 * 30.00454 * 1 2 3 29 29 H 1.09004 * 109.47501 * 149.99937 * 1 2 3 30 30 H 1.08991 * 109.47375 * 34.99427 * 3 2 1 31 31 H 1.08996 * 109.47368 * 155.00258 * 3 2 1 32 32 H 0.97006 * 120.00478 * 179.97438 * 7 6 4 33 33 H 1.08003 * 120.01568 * 0.07735 * 16 15 12 34 34 H 1.08000 * 119.89067 * 180.02562 * 17 16 15 35 35 H 1.07999 * 119.83958 * 359.96935 * 20 15 12 36 36 H 1.09002 * 109.43846 * 222.19340 * 21 19 18 37 37 H 1.08999 * 109.43358 * 102.27743 * 21 19 18 38 38 H 1.09000 * 109.69568 * 167.91301 * 22 21 19 39 39 H 1.08996 * 109.69683 * 288.46902 * 22 21 19 40 40 H 1.09006 * 109.46844 * 59.99618 * 24 23 22 41 41 H 1.08991 * 109.47309 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.47364 * 300.00307 * 24 23 22 43 43 H 1.08994 * 109.47443 * 59.99767 * 25 23 22 44 44 H 1.08994 * 109.47382 * 180.02562 * 25 23 22 45 45 H 1.09004 * 109.47371 * 299.99968 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3415 1.7655 -1.4155 5 1 1.9283 1.1937 -2.2332 6 6 2.9999 2.9507 -1.6665 7 7 3.1251 3.3845 -2.9016 8 14 3.7128 3.9408 -0.2519 9 1 5.1100 3.5063 0.0017 10 1 3.6989 5.3840 -0.6015 11 1 2.8962 3.7191 0.9685 12 16 2.2929 -1.4343 0.0006 13 8 1.4113 -2.4063 0.5456 14 8 3.5759 -1.1566 0.5450 15 6 2.5537 -1.8867 -1.6821 16 6 3.6932 -1.4656 -2.3430 17 6 3.8953 -1.8188 -3.6613 18 6 2.9562 -2.5986 -4.3292 19 6 1.8186 -3.0206 -3.6653 20 6 1.6200 -2.6616 -2.3417 21 6 0.7788 -3.8717 -4.3490 22 6 0.9573 -3.7821 -5.8667 23 6 2.4406 -4.0014 -6.1908 24 6 2.9102 -5.3256 -5.5849 25 6 2.6381 -4.0291 -7.7077 26 8 3.1887 -2.9227 -5.6279 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6502 2.0042 0.5893 31 1 3.1858 1.1176 0.4342 32 1 3.5880 4.2185 -3.0782 33 1 4.4242 -0.8603 -1.8275 34 1 4.7858 -1.4897 -4.1762 35 1 0.7310 -2.9893 -1.8234 36 1 -0.2157 -3.5160 -4.0791 37 1 0.8921 -4.9080 -4.0309 38 1 0.3572 -4.5511 -6.3532 39 1 0.6459 -2.7976 -6.2158 40 1 2.3241 -6.1443 -6.0025 41 1 3.9640 -5.4781 -5.8176 42 1 2.7768 -5.2980 -4.5035 43 1 2.3113 -3.0807 -8.1340 44 1 3.6927 -4.1855 -7.9340 45 1 2.0506 -4.8414 -8.1358 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260713138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:58 Heat of formation + Delta-G solvation = -111.332344 kcal Electronic energy + Delta-G solvation = -28633.957624 eV Core-core repulsion = 24742.680225 eV Total energy + Delta-G solvation = -3891.277398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.10521 -39.00166 -38.33870 -37.31036 -36.91103 -35.94098 -34.48556 -33.65579 -31.55174 -30.25350 -29.56983 -28.36802 -26.78833 -25.27202 -24.12798 -23.73673 -23.66361 -20.75497 -19.62131 -19.13271 -18.78254 -18.40185 -17.93526 -17.61852 -16.94715 -16.42366 -16.17854 -15.94021 -15.62576 -15.44762 -15.23438 -14.74251 -14.49246 -14.45398 -14.26365 -14.18701 -14.08896 -13.54795 -13.46014 -13.36797 -13.31426 -13.19483 -13.10371 -12.98402 -12.97803 -12.82173 -12.51044 -12.39734 -12.29432 -12.13448 -11.96560 -11.72805 -11.65232 -11.62538 -11.26655 -10.75872 -9.94529 -9.78405 -9.49422 -8.26766 -6.31739 -0.54321 -0.11038 0.20688 1.38747 1.41840 1.49362 1.95073 2.11496 2.36394 2.42258 2.80818 3.08158 3.28227 3.54126 3.61060 3.61955 3.75900 3.92200 4.04088 4.10520 4.15530 4.24783 4.36933 4.48462 4.58628 4.69188 4.69812 4.76589 4.79774 4.82474 4.86085 4.86552 4.95085 4.96470 4.98159 5.04382 5.04780 5.10492 5.13327 5.29832 5.30328 5.34204 5.47271 5.63379 5.74640 6.31675 6.36089 6.73909 7.32573 8.88674 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.004228 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.413952 B = 6621.195289 C = 7772.817838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.989 5.989 3 C 0.217 3.783 4 C -0.536 4.536 5 H 0.047 0.953 6 C 0.022 3.978 7 N -0.939 5.939 8 Si 0.924 3.076 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.238 1.238 12 S 2.707 3.293 13 O -0.977 6.977 14 O -0.991 6.991 15 C -0.709 4.709 16 C 0.012 3.988 17 C -0.187 4.187 18 C 0.184 3.816 19 C -0.186 4.186 20 C 0.006 3.994 21 C -0.078 4.078 22 C -0.145 4.145 23 C 0.094 3.906 24 C -0.173 4.173 25 C -0.136 4.136 26 O -0.321 6.321 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.159 0.841 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 -17.431 -5.875 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.827 5.827 3 C 0.092 3.908 4 C -0.575 4.575 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.579 5.579 8 Si 0.747 3.253 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.162 1.162 12 S 2.799 3.201 13 O -0.967 6.967 14 O -0.982 6.982 15 C -0.798 4.798 16 C -0.007 4.007 17 C -0.207 4.207 18 C 0.137 3.863 19 C -0.188 4.188 20 C -0.013 4.013 21 C -0.114 4.114 22 C -0.182 4.182 23 C 0.057 3.943 24 C -0.230 4.230 25 C -0.192 4.192 26 O -0.235 6.235 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.176 0.824 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.140 0.860 39 H 0.083 0.917 40 H 0.123 0.877 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.611 -17.661 -5.376 19.295 hybrid contribution 0.718 1.280 -0.437 1.531 sum -4.893 -16.381 -5.812 18.057 Atomic orbital electron populations 1.21606 0.77275 1.03651 1.02801 1.57046 1.15831 1.20783 1.89048 1.19455 0.92744 0.82244 0.96342 1.21615 1.36084 1.06959 0.92825 0.93510 1.25650 0.95867 0.98396 0.97761 1.70037 1.43948 1.22731 1.21180 0.86059 0.80063 0.78120 0.81016 1.19588 1.20660 1.16150 1.01180 0.72482 0.72203 0.74200 1.93490 1.66276 1.59567 1.77370 1.93483 1.41919 1.85022 1.77788 1.30694 1.05435 1.16456 1.27186 1.20629 0.94510 0.91826 0.93771 1.20806 1.01150 1.04120 0.94577 1.18899 0.91965 0.91881 0.83510 1.20207 0.97263 1.05975 0.95355 1.20912 0.96495 0.90597 0.93326 1.20669 0.96793 0.99533 0.94433 1.22312 0.95579 1.04327 0.95973 1.22426 0.91170 0.85140 0.95552 1.22438 1.02808 0.96408 1.01363 1.21838 1.03737 1.03963 0.89706 1.86062 1.63668 1.51811 1.21976 0.90867 0.90748 0.90414 0.92736 0.94188 0.92485 0.85162 0.84396 0.82350 0.88399 0.87971 0.85979 0.91718 0.87708 0.91910 0.92751 0.92190 0.91586 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.90 10.31 127.77 1.32 4.22 16 2 N -0.99 -39.57 3.17 -543.24 -1.72 -41.29 16 3 C 0.22 10.01 4.48 85.64 0.38 10.39 16 4 C -0.54 -29.13 9.94 25.60 0.25 -28.88 16 5 H 0.05 2.81 8.06 -2.91 -0.02 2.78 16 6 C 0.02 1.25 5.47 84.65 0.46 1.71 16 7 N -0.94 -56.83 13.96 21.45 0.30 -56.53 16 8 Si 0.92 42.47 27.47 68.60 1.88 44.36 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 12 S 2.71 107.65 5.65 -56.49 -0.32 107.33 16 13 O -0.98 -37.45 16.35 -128.00 -2.09 -39.54 16 14 O -0.99 -44.97 15.84 -128.00 -2.03 -47.00 16 15 C -0.71 -27.19 5.97 22.25 0.13 -27.06 16 16 C 0.01 0.49 9.52 22.22 0.21 0.71 16 17 C -0.19 -7.03 9.94 22.42 0.22 -6.81 16 18 C 0.18 6.12 6.02 22.50 0.14 6.25 16 19 C -0.19 -5.47 5.17 -19.75 -0.10 -5.58 16 20 C 0.01 0.19 9.15 22.32 0.20 0.40 16 21 C -0.08 -1.50 5.21 29.90 0.16 -1.35 16 22 C -0.14 -2.43 5.10 30.76 0.16 -2.27 16 23 C 0.09 1.81 1.13 -10.66 -0.01 1.79 16 24 C -0.17 -2.77 8.15 71.98 0.59 -2.18 16 25 C -0.14 -1.94 8.88 71.98 0.64 -1.30 16 26 O -0.32 -9.42 9.67 -91.86 -0.89 -10.31 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 29 H 0.08 2.11 7.79 -2.38 -0.02 2.09 16 30 H 0.05 2.36 7.16 -2.39 -0.02 2.34 16 31 H 0.04 1.90 6.34 -2.39 -0.02 1.89 16 32 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 33 H 0.13 5.55 7.62 -2.91 -0.02 5.53 16 34 H 0.14 4.87 8.06 -2.91 -0.02 4.84 16 35 H 0.16 4.22 7.61 -2.91 -0.02 4.20 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.10 1.55 7.00 -2.39 -0.02 1.53 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.05 1.03 5.88 -2.39 -0.01 1.01 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -72.97 372.46 0.81 -72.16 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.93 Total: 20.78 kcal Atomic # 6 Polarization: -54.70 SS G_CDS: 4.75 Total: -49.95 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -1.42 Total: -97.82 kcal Atomic # 8 Polarization: -91.85 SS G_CDS: -5.01 Total: -96.86 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.88 Total: 44.36 kcal Atomic # 16 Polarization: 107.65 SS G_CDS: -0.32 Total: 107.33 kcal Total: -72.97 0.81 -72.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260713138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.175 kcal (2) G-P(sol) polarization free energy of solvation -72.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds