Wall clock time and date at job start Sat Apr 11 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00073 * 2 1 4 4 H 1.48501 * 109.46833 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46907 * 299.99476 * 3 2 1 6 6 H 1.48495 * 109.47088 * 60.00012 * 3 2 1 7 7 C 1.37882 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00122 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99967 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47419 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47591 * 179.97438 * 10 9 7 12 12 O 1.42108 * 110.54281 * 68.37148 * 11 10 9 13 13 O 1.42098 * 110.54415 * 291.62396 * 11 10 9 14 14 N 1.65594 * 104.45345 * 179.97438 * 11 10 9 15 15 C 1.46923 * 120.63391 * 270.02382 * 14 11 10 16 16 C 1.53194 * 108.77867 * 233.58487 * 15 14 11 17 17 C 1.53043 * 109.30931 * 305.36621 * 16 15 14 18 18 C 1.53037 * 109.54031 * 61.36371 * 17 16 15 19 19 O 1.42902 * 109.52718 * 58.59987 * 18 17 16 20 20 C 1.50701 * 109.49832 * 178.68208 * 18 17 16 21 21 C 1.38234 * 120.00243 * 269.83712 * 20 18 17 22 22 C 1.38234 * 120.00240 * 180.02562 * 21 20 18 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38238 * 119.99752 * 359.47832 * 23 22 21 25 25 C 1.38234 * 120.00005 * 0.52168 * 24 23 22 26 26 C 1.46933 * 120.62836 * 90.00011 * 14 11 10 27 27 H 0.96999 * 119.99849 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47587 * 59.99415 * 9 7 2 29 29 H 1.09006 * 109.46827 * 299.99702 * 9 7 2 30 30 H 1.09000 * 109.47493 * 59.99661 * 10 9 7 31 31 H 1.09006 * 109.46834 * 299.99644 * 10 9 7 32 32 H 1.09002 * 109.58510 * 353.37266 * 15 14 11 33 33 H 1.09005 * 109.58669 * 113.79594 * 15 14 11 34 34 H 1.09002 * 109.49609 * 65.31456 * 16 15 14 35 35 H 1.08989 * 109.50182 * 185.38115 * 16 15 14 36 36 H 1.09000 * 109.46195 * 301.34093 * 17 16 15 37 37 H 1.09006 * 109.45687 * 181.38276 * 17 16 15 38 38 H 0.96699 * 113.99462 * 60.08004 * 19 18 17 39 39 H 1.07999 * 119.99751 * 359.97438 * 21 20 18 40 40 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 42 42 H 1.07999 * 119.99924 * 180.23487 * 24 23 22 43 43 H 1.08001 * 120.00310 * 179.72165 * 25 24 23 44 44 H 1.08998 * 109.58426 * 6.62392 * 26 14 11 45 45 H 1.09002 * 109.70204 * 246.27234 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 16 1.3383 -5.2331 0.0026 12 8 0.6647 -5.4206 -1.2346 13 8 0.6637 -5.4189 1.2394 14 7 2.5203 -6.3927 0.0032 15 6 3.0552 -6.9173 -1.2606 16 6 2.9460 -8.4453 -1.2460 17 6 3.6399 -8.9902 0.0045 18 6 2.9455 -8.4443 1.2542 19 8 1.5679 -8.8238 1.2395 20 6 3.6090 -9.0069 2.4848 21 6 3.1541 -10.1904 3.0355 22 6 3.7624 -10.7063 4.1645 23 6 4.8222 -10.0358 4.7460 24 6 5.2806 -8.8550 4.1923 25 6 4.6723 -8.3392 3.0632 26 6 3.0546 -6.9163 1.2679 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8712 -3.6040 0.8922 31 1 2.8725 -3.6048 -0.8878 32 1 2.4788 -6.5178 -2.0951 33 1 4.1007 -6.6266 -1.3636 34 1 1.8952 -8.7348 -1.2343 35 1 3.4258 -8.8529 -2.1356 36 1 4.6847 -8.6795 0.0047 37 1 3.5850 -10.0789 0.0050 38 1 1.4235 -9.7799 1.2293 39 1 2.3229 -10.7116 2.5841 40 1 3.4067 -11.6307 4.5949 41 1 5.2947 -10.4365 5.6307 42 1 6.1110 -8.3332 4.6444 43 1 5.0275 -7.4144 2.6332 44 1 2.4779 -6.5161 2.1017 45 1 4.0998 -6.6256 1.3736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261797982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:06 Heat of formation + Delta-G solvation = -99.107894 kcal Electronic energy + Delta-G solvation = -28033.986863 eV Core-core repulsion = 24143.239556 eV Total energy + Delta-G solvation = -3890.747306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.51398 -38.30502 -36.57852 -35.73935 -35.29698 -33.86102 -32.38682 -32.11181 -31.12793 -31.08023 -28.98808 -25.60689 -24.82463 -24.05337 -22.63256 -21.81383 -21.41764 -20.29834 -18.59813 -17.83103 -17.40119 -16.59107 -16.22666 -16.00287 -15.55376 -15.49708 -15.18643 -14.61773 -14.49575 -14.42211 -14.32117 -13.99213 -13.63843 -13.37513 -13.24112 -12.89012 -12.64356 -12.49913 -12.26303 -11.87562 -11.77029 -11.71370 -11.55316 -11.47129 -11.29835 -11.16254 -11.08119 -11.03095 -10.92762 -10.55635 -10.36540 -10.35333 -10.10481 -9.73399 -9.29598 -9.18805 -9.03618 -8.66981 -8.49219 -6.10858 -4.16378 0.80846 1.06027 1.13204 3.06274 3.26114 3.33184 3.36651 3.47457 4.05510 4.23935 4.34536 4.41907 4.47975 4.58482 4.69588 4.70492 4.77394 4.81856 4.98597 5.00429 5.12722 5.21135 5.24238 5.27892 5.38825 5.52466 5.57117 5.64276 5.65482 5.70924 5.71594 5.76744 5.77575 5.83561 6.11476 6.17293 6.22385 6.25302 6.31041 6.52011 6.68527 6.72742 7.32768 7.38811 7.50762 7.82296 8.19567 8.87290 9.48248 11.00245 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.002973 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.202507 B = 9415.348812 C =10251.569505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.592 4.592 11 S 2.592 3.408 12 O -0.964 6.964 13 O -0.957 6.957 14 N -0.999 5.999 15 C 0.116 3.884 16 C -0.128 4.128 17 C -0.135 4.135 18 C 0.164 3.836 19 O -0.535 6.535 20 C -0.104 4.104 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.116 4.116 25 C -0.114 4.114 26 C 0.133 3.867 27 H 0.264 0.736 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.369 0.631 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.104 0.896 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.313 -23.210 3.915 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.725 4.725 11 S 2.691 3.309 12 O -0.954 6.954 13 O -0.947 6.947 14 N -0.834 5.834 15 C -0.009 4.009 16 C -0.167 4.167 17 C -0.173 4.173 18 C 0.121 3.879 19 O -0.340 6.340 20 C -0.105 4.105 21 C -0.129 4.129 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.134 4.134 25 C -0.132 4.132 26 C 0.007 3.993 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.216 0.784 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.122 0.878 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.127 -22.641 3.902 25.527 hybrid contribution 1.196 0.546 0.124 1.321 sum 12.324 -22.094 4.026 25.617 Atomic orbital electron populations 1.69968 1.06115 1.27068 1.49675 1.25079 0.94973 0.99548 0.94946 0.86416 0.79920 0.83201 0.77763 1.19652 1.20792 1.20794 1.21046 0.93078 0.89770 1.51976 0.92011 1.18964 0.92726 0.90601 0.98854 1.30541 1.13731 1.18374 1.09900 1.05695 0.74818 0.76210 0.74217 1.93517 1.71153 1.85233 1.45519 1.93541 1.70965 1.84997 1.45197 1.57863 1.59307 1.55702 1.10526 1.21422 0.99329 0.94290 0.85866 1.21788 1.02199 0.95662 0.97010 1.22144 1.00197 1.00442 0.94523 1.20294 0.81860 0.95084 0.90616 1.86774 1.22966 1.27496 1.96774 1.20473 0.96826 0.95684 0.97508 1.20860 0.99696 0.95647 0.96685 1.21110 0.96414 0.99983 0.96006 1.21181 0.97213 0.95764 0.99945 1.21181 0.99939 0.96183 0.96089 1.21152 0.95934 0.99869 0.96278 1.21453 0.99899 0.90886 0.87041 0.92585 0.94877 0.94871 0.86383 0.86331 0.88533 0.91638 0.90523 0.90814 0.90700 0.91495 0.78367 0.86164 0.86029 0.86122 0.85838 0.85398 0.87770 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 10 C -0.59 -11.67 6.11 37.16 0.23 -11.45 16 11 S 2.59 49.39 5.45 -107.50 -0.59 48.81 16 12 O -0.96 -20.79 16.59 -57.54 -0.95 -21.74 16 13 O -0.96 -21.12 16.59 -57.54 -0.95 -22.08 16 14 N -1.00 -14.25 3.16 -113.51 -0.36 -14.61 16 15 C 0.12 1.35 6.43 -3.71 -0.02 1.33 16 16 C -0.13 -1.25 5.94 -26.61 -0.16 -1.41 16 17 C -0.14 -1.18 4.87 -26.69 -0.13 -1.31 16 18 C 0.16 1.78 0.86 -91.65 -0.08 1.70 16 19 O -0.53 -6.67 11.91 -35.23 -0.42 -7.09 16 20 C -0.10 -1.03 4.84 -104.62 -0.51 -1.53 16 21 C -0.11 -0.98 9.32 -39.58 -0.37 -1.35 16 22 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 23 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 24 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 25 C -0.11 -1.06 9.14 -39.58 -0.36 -1.42 16 26 C 0.13 1.68 4.86 -3.71 -0.02 1.66 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 31 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 32 H 0.10 1.22 6.86 -51.93 -0.36 0.86 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.87 7.61 -51.93 -0.40 0.48 16 35 H 0.07 0.56 8.14 -51.94 -0.42 0.14 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.37 3.03 7.33 45.56 0.33 3.36 16 39 H 0.12 0.83 6.49 -52.49 -0.34 0.49 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.13 1.01 6.05 -52.49 -0.32 0.69 16 44 H 0.10 1.52 6.86 -51.93 -0.36 1.16 16 45 H 0.08 0.78 6.21 -51.93 -0.32 0.46 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -36.98 372.69 -11.05 -48.03 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.95 Total: 3.38 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: -3.16 Total: -30.60 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.38 Total: -40.64 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -2.33 Total: -50.90 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 49.39 SS G_CDS: -0.59 Total: 48.81 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.98 -11.05 -48.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261797982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.078 kcal (2) G-P(sol) polarization free energy of solvation -36.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds