Wall clock time and date at job start Sat Apr 11 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00073 * 2 1 4 4 H 1.48501 * 109.46833 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46907 * 299.99476 * 3 2 1 6 6 H 1.48495 * 109.47088 * 60.00012 * 3 2 1 7 7 C 1.37882 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00122 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99967 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47419 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47591 * 179.97438 * 10 9 7 12 12 O 1.42108 * 110.54281 * 68.37148 * 11 10 9 13 13 O 1.42098 * 110.54415 * 291.62396 * 11 10 9 14 14 N 1.65594 * 104.45345 * 179.97438 * 11 10 9 15 15 C 1.46923 * 120.63391 * 270.02382 * 14 11 10 16 16 C 1.53194 * 108.77867 * 233.58487 * 15 14 11 17 17 C 1.53043 * 109.30931 * 305.36621 * 16 15 14 18 18 C 1.53037 * 109.54031 * 61.36371 * 17 16 15 19 19 O 1.42902 * 109.52718 * 58.59987 * 18 17 16 20 20 C 1.50701 * 109.49832 * 178.68208 * 18 17 16 21 21 C 1.38234 * 120.00243 * 269.83712 * 20 18 17 22 22 C 1.38234 * 120.00240 * 180.02562 * 21 20 18 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38238 * 119.99752 * 359.47832 * 23 22 21 25 25 C 1.38234 * 120.00005 * 0.52168 * 24 23 22 26 26 C 1.46933 * 120.62836 * 90.00011 * 14 11 10 27 27 H 0.96999 * 119.99849 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47587 * 59.99415 * 9 7 2 29 29 H 1.09006 * 109.46827 * 299.99702 * 9 7 2 30 30 H 1.09000 * 109.47493 * 59.99661 * 10 9 7 31 31 H 1.09006 * 109.46834 * 299.99644 * 10 9 7 32 32 H 1.09002 * 109.58510 * 353.37266 * 15 14 11 33 33 H 1.09005 * 109.58669 * 113.79594 * 15 14 11 34 34 H 1.09002 * 109.49609 * 65.31456 * 16 15 14 35 35 H 1.08989 * 109.50182 * 185.38115 * 16 15 14 36 36 H 1.09000 * 109.46195 * 301.34093 * 17 16 15 37 37 H 1.09006 * 109.45687 * 181.38276 * 17 16 15 38 38 H 0.96699 * 113.99462 * 60.08004 * 19 18 17 39 39 H 1.07999 * 119.99751 * 359.97438 * 21 20 18 40 40 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 42 42 H 1.07999 * 119.99924 * 180.23487 * 24 23 22 43 43 H 1.08001 * 120.00310 * 179.72165 * 25 24 23 44 44 H 1.08998 * 109.58426 * 6.62392 * 26 14 11 45 45 H 1.09002 * 109.70204 * 246.27234 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 16 1.3383 -5.2331 0.0026 12 8 0.6647 -5.4206 -1.2346 13 8 0.6637 -5.4189 1.2394 14 7 2.5203 -6.3927 0.0032 15 6 3.0552 -6.9173 -1.2606 16 6 2.9460 -8.4453 -1.2460 17 6 3.6399 -8.9902 0.0045 18 6 2.9455 -8.4443 1.2542 19 8 1.5679 -8.8238 1.2395 20 6 3.6090 -9.0069 2.4848 21 6 3.1541 -10.1904 3.0355 22 6 3.7624 -10.7063 4.1645 23 6 4.8222 -10.0358 4.7460 24 6 5.2806 -8.8550 4.1923 25 6 4.6723 -8.3392 3.0632 26 6 3.0546 -6.9163 1.2679 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8712 -3.6040 0.8922 31 1 2.8725 -3.6048 -0.8878 32 1 2.4788 -6.5178 -2.0951 33 1 4.1007 -6.6266 -1.3636 34 1 1.8952 -8.7348 -1.2343 35 1 3.4258 -8.8529 -2.1356 36 1 4.6847 -8.6795 0.0047 37 1 3.5850 -10.0789 0.0050 38 1 1.4235 -9.7799 1.2293 39 1 2.3229 -10.7116 2.5841 40 1 3.4067 -11.6307 4.5949 41 1 5.2947 -10.4365 5.6307 42 1 6.1110 -8.3332 4.6444 43 1 5.0275 -7.4144 2.6332 44 1 2.4779 -6.5161 2.1017 45 1 4.0998 -6.6256 1.3736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261797982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:05 Heat of formation + Delta-G solvation = -126.182550 kcal Electronic energy + Delta-G solvation = -28035.160908 eV Core-core repulsion = 24143.239556 eV Total energy + Delta-G solvation = -3891.921352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25808 -39.03848 -38.21660 -37.00685 -36.63841 -35.90747 -33.20924 -33.13644 -32.93086 -31.69056 -29.75662 -27.61380 -25.78883 -24.82572 -23.56632 -23.23197 -22.42676 -21.17560 -19.83104 -19.19815 -18.54541 -18.24567 -17.33681 -17.10433 -16.87134 -16.55162 -16.27111 -16.23394 -15.68305 -15.23007 -15.10025 -15.05474 -14.84768 -14.48307 -14.39925 -14.02249 -13.73737 -13.67018 -13.44734 -13.20561 -13.16369 -13.12078 -12.95621 -12.82847 -12.78305 -12.38186 -12.27921 -12.18465 -12.10099 -11.95212 -11.85640 -11.75451 -11.43474 -11.11920 -10.87771 -10.67011 -9.95600 -9.79683 -9.55930 -8.26975 -6.41717 -0.72111 0.42796 0.52312 1.40423 1.41593 1.54972 1.74238 2.37561 2.84345 2.90375 3.06194 3.16651 3.27242 3.53928 3.69852 3.84641 3.91333 4.04905 4.09938 4.13419 4.16645 4.23796 4.30858 4.38086 4.52968 4.57593 4.65541 4.73089 4.78206 4.80149 4.87393 4.97800 5.06738 5.10021 5.17733 5.21311 5.24290 5.25579 5.41213 5.57778 5.64744 5.65970 5.67050 5.69027 6.04301 6.12213 6.72238 6.83062 7.28692 8.85734 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.002973 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.202507 B = 9415.348812 C =10251.569505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.977 3.023 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.020 3.980 10 C -0.587 4.587 11 S 2.609 3.391 12 O -0.995 6.995 13 O -0.994 6.994 14 N -0.988 5.988 15 C 0.104 3.896 16 C -0.126 4.126 17 C -0.128 4.128 18 C 0.164 3.836 19 O -0.565 6.565 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.125 4.125 25 C -0.128 4.128 26 C 0.121 3.879 27 H 0.268 0.732 28 H 0.005 0.995 29 H 0.003 0.997 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.384 0.616 39 H 0.133 0.867 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.078 0.922 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.732 -24.210 4.060 29.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.800 3.200 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.577 4.577 8 H 0.096 0.904 9 C -0.019 4.019 10 C -0.719 4.719 11 S 2.708 3.292 12 O -0.986 6.986 13 O -0.984 6.984 14 N -0.826 5.826 15 C -0.020 4.020 16 C -0.164 4.164 17 C -0.165 4.165 18 C 0.122 3.878 19 O -0.373 6.373 20 C -0.118 4.118 21 C -0.141 4.141 22 C -0.143 4.143 23 C -0.147 4.147 24 C -0.143 4.143 25 C -0.146 4.146 26 C -0.004 4.004 27 H 0.076 0.924 28 H 0.023 0.977 29 H 0.021 0.979 30 H 0.159 0.841 31 H 0.162 0.838 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.234 0.766 39 H 0.150 0.850 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.155 0.845 44 H 0.096 0.904 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.554 -23.656 4.044 28.067 hybrid contribution 0.132 0.741 0.117 0.762 sum 14.686 -22.914 4.161 27.533 Atomic orbital electron populations 1.70120 1.08188 1.28321 1.50890 1.26174 0.95883 1.04057 0.94313 0.85219 0.79195 0.77737 0.77816 1.17711 1.20292 1.20365 1.21546 0.94033 0.90633 1.51499 0.90416 1.18822 0.93622 0.93284 0.96127 1.30412 1.12740 1.16473 1.12290 1.04794 0.75191 0.76489 0.72713 1.93467 1.72692 1.85762 1.46638 1.93486 1.72692 1.85603 1.46665 1.57419 1.58565 1.54164 1.12501 1.21805 1.00825 0.95581 0.83832 1.21799 1.01454 0.94237 0.98959 1.22112 1.00518 1.01329 0.92554 1.20318 0.81452 0.93710 0.92330 1.86730 1.24443 1.29142 1.96961 1.20448 0.97389 0.96363 0.97575 1.21103 1.00174 0.95677 0.97114 1.21410 0.96378 1.00724 0.95764 1.21516 0.97096 0.95629 1.00474 1.21464 1.00413 0.96491 0.95904 1.21355 0.96081 1.00338 0.96808 1.21788 1.01137 0.92412 0.85054 0.92364 0.97708 0.97887 0.84088 0.83800 0.89949 0.88033 0.92732 0.87978 0.88965 0.89854 0.76647 0.84964 0.84194 0.84161 0.84136 0.84463 0.90387 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.96 13.29 21.45 0.28 -57.67 16 2 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 3 Si 0.98 43.63 29.54 68.60 2.03 45.66 16 4 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -30.34 9.11 25.60 0.23 -30.11 16 8 H 0.08 4.02 7.74 -2.91 -0.02 3.99 16 9 C 0.02 1.10 4.98 29.85 0.15 1.25 16 10 C -0.59 -23.17 6.11 71.98 0.44 -22.73 16 11 S 2.61 102.12 5.45 -56.49 -0.31 101.81 16 12 O -1.00 -44.55 16.59 -127.65 -2.12 -46.67 16 13 O -0.99 -45.96 16.59 -127.65 -2.12 -48.08 16 14 N -0.99 -27.35 3.16 -513.05 -1.62 -28.97 16 15 C 0.10 2.21 6.43 86.36 0.56 2.76 16 16 C -0.13 -2.18 5.94 30.67 0.18 -2.00 16 17 C -0.13 -1.86 4.87 30.62 0.15 -1.72 16 18 C 0.16 3.32 0.86 -11.46 -0.01 3.31 16 19 O -0.56 -13.97 11.91 -148.98 -1.77 -15.74 16 20 C -0.12 -2.12 4.84 -19.86 -0.10 -2.21 16 21 C -0.12 -1.98 9.32 22.27 0.21 -1.77 16 22 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 23 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 24 C -0.12 -1.82 10.05 22.27 0.22 -1.59 16 25 C -0.13 -2.11 9.14 22.27 0.20 -1.91 16 26 C 0.12 2.91 4.86 86.36 0.42 3.33 16 27 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 30 H 0.14 4.85 8.14 -2.39 -0.02 4.83 16 31 H 0.14 4.88 8.14 -2.39 -0.02 4.86 16 32 H 0.08 2.01 6.86 -2.39 -0.02 1.99 16 33 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.05 1.20 7.61 -2.39 -0.02 1.18 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.38 6.15 7.33 -74.06 -0.54 5.60 16 39 H 0.13 1.65 6.49 -2.91 -0.02 1.64 16 40 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 41 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 42 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 43 H 0.14 1.84 6.05 -2.91 -0.02 1.83 16 44 H 0.08 2.30 6.86 -2.39 -0.02 2.28 16 45 H 0.12 1.92 6.21 -2.39 -0.01 1.91 16 Total: -1.00 -83.20 372.69 -1.61 -84.81 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.46 Total: 21.22 kcal Atomic # 6 Polarization: -59.93 SS G_CDS: 3.57 Total: -56.37 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -1.34 Total: -86.65 kcal Atomic # 8 Polarization: -104.47 SS G_CDS: -6.01 Total: -110.48 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 102.12 SS G_CDS: -0.31 Total: 101.81 kcal Total: -83.20 -1.61 -84.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261797982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.374 kcal (2) G-P(sol) polarization free energy of solvation -83.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds