Wall clock time and date at job start Sat Apr 11 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00074 * 2 1 4 4 C 1.52999 * 109.47447 * 275.34900 * 3 2 1 5 5 H 1.08996 * 112.77706 * 43.98419 * 4 3 2 6 6 C 1.53496 * 113.47018 * 273.20143 * 4 3 2 7 7 C 1.53496 * 83.34364 * 219.15189 * 6 4 3 8 8 N 1.47059 * 87.98719 * 26.06807 * 7 6 4 9 9 C 1.34776 * 136.06083 * 152.62024 * 8 7 6 10 10 O 1.21551 * 120.00225 * 175.02932 * 9 8 7 11 11 C 1.47871 * 119.99545 * 355.03366 * 9 8 7 12 12 N 1.34547 * 126.05119 * 359.68782 * 11 9 8 13 13 C 1.30873 * 107.27309 * 179.87380 * 12 11 9 14 14 N 1.34586 * 107.61896 * 0.38518 * 13 12 11 15 15 H 0.97008 * 125.74439 * 179.73510 * 14 13 12 16 16 N 1.28841 * 108.50750 * 359.75670 * 14 13 12 17 17 C 1.34776 * 119.99778 * 180.02562 * 2 1 3 18 18 O 1.21288 * 119.99724 * 179.97438 * 17 2 1 19 19 C 1.50700 * 120.00242 * 359.97438 * 17 2 1 20 20 S 1.81004 * 109.47293 * 180.02562 * 19 17 2 21 21 C 1.76190 * 100.00076 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00562 * 0.02562 * 21 20 19 23 23 C 1.38804 * 120.00095 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99806 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00206 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47317 * 89.99815 * 25 23 21 27 27 H 1.48502 * 109.47104 * 209.99779 * 25 23 21 28 28 H 1.48505 * 109.46952 * 329.99522 * 25 23 21 29 29 H 1.08995 * 109.47032 * 85.61487 * 1 2 3 30 30 H 1.09005 * 109.46778 * 205.61521 * 1 2 3 31 31 H 1.08990 * 109.46977 * 325.61074 * 1 2 3 32 32 H 1.09005 * 109.47149 * 155.35111 * 3 2 1 33 33 H 1.09003 * 109.47305 * 35.35237 * 3 2 1 34 34 H 1.09004 * 114.20735 * 105.55945 * 6 4 3 35 35 H 1.09002 * 114.38518 * 332.75557 * 6 4 3 36 36 H 1.08998 * 113.46579 * 271.28252 * 7 6 4 37 37 H 1.08998 * 113.51976 * 140.85937 * 7 6 4 38 38 H 1.07993 * 126.18843 * 180.12266 * 13 12 11 39 39 H 1.08997 * 109.46894 * 300.00193 * 19 17 2 40 40 H 1.09003 * 109.46741 * 60.00498 * 19 17 2 41 41 H 0.96996 * 119.99757 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3361 1.7776 -1.4362 5 1 1.4122 1.6863 -2.0072 6 6 3.5644 1.2182 -2.1672 7 6 3.6533 2.6419 -2.7339 8 7 2.9525 3.1097 -1.5286 9 6 2.9019 4.2538 -0.8179 10 8 2.1303 4.3557 0.1158 11 6 3.7850 5.3850 -1.1742 12 7 4.6843 5.4029 -2.1748 13 6 5.2572 6.5795 -2.1614 14 7 4.7185 7.2834 -1.1487 15 1 4.9560 8.1904 -0.8997 16 7 3.8346 6.5496 -0.5654 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1672 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 16 2.5615 -3.8481 -0.0005 21 6 1.4415 -5.2082 -0.0013 22 1 0.3762 -5.0306 -0.0020 23 6 1.9282 -6.5081 -0.0010 24 7 3.2266 -6.7247 -0.0006 25 14 0.7408 -7.9501 -0.0025 26 1 0.4276 -8.3320 -1.4029 27 1 1.3613 -9.1031 0.6980 28 1 -0.5106 -7.5615 0.6963 29 1 -0.3633 0.0786 -1.0246 30 1 -0.3633 -0.9267 0.4443 31 1 -0.3633 0.8480 0.5804 32 1 3.1881 1.1163 0.4286 33 1 1.6533 2.0025 0.5946 34 1 3.3331 0.4549 -2.9102 35 1 4.3921 0.9452 -1.5125 36 1 3.0803 2.7808 -3.6506 37 1 4.6743 3.0150 -2.8147 38 1 6.0265 6.9219 -2.8377 39 1 0.7590 -2.5302 0.8897 40 1 0.7584 -2.5298 -0.8904 41 1 3.5667 -7.6331 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282021985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:29 Heat of formation + Delta-G solvation = 45.134697 kcal Electronic energy + Delta-G solvation = -26266.008802 eV Core-core repulsion = 22310.268731 eV Total energy + Delta-G solvation = -3955.740071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.47873 -41.73761 -40.51759 -38.91140 -36.53208 -34.63218 -34.55348 -32.54680 -31.96227 -30.85832 -29.26909 -27.66528 -27.35728 -25.77813 -24.35430 -23.78716 -22.65833 -20.69196 -20.47303 -19.60673 -19.44420 -18.17579 -17.89937 -17.60203 -17.48618 -17.10421 -16.85308 -16.81989 -16.13082 -15.75318 -15.61233 -15.17976 -14.78399 -14.50141 -14.21545 -14.13288 -13.93758 -13.61361 -13.45329 -13.22425 -13.20746 -13.10707 -12.88186 -12.80994 -12.57031 -12.52081 -11.77463 -11.77053 -11.69904 -11.46515 -11.28214 -11.11400 -10.85635 -10.83835 -10.22393 -9.98533 -9.61863 -8.62687 -8.31835 -6.08993 0.24160 1.13195 1.17433 1.32506 1.44247 1.49419 1.59188 1.61064 1.99750 2.16496 2.24197 2.30786 2.92151 3.02241 3.29176 3.35698 3.51827 3.69303 3.84745 3.93487 3.98662 4.05461 4.23717 4.33635 4.40991 4.46780 4.52939 4.54265 4.68428 4.73933 4.82830 4.93147 4.95666 5.00435 5.25276 5.26476 5.45022 5.48552 5.94403 6.22591 6.27224 6.47094 6.74461 7.06090 7.09672 7.16009 8.77195 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032584 B = 0.002050 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.100023 B =13654.430926 C =14084.484783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.116 3.884 4 C 0.125 3.875 5 H 0.119 0.881 6 C -0.143 4.143 7 C 0.120 3.880 8 N -0.624 5.624 9 C 0.632 3.368 10 O -0.561 6.561 11 C 0.127 3.873 12 N -0.505 5.505 13 C 0.222 3.778 14 N -0.383 5.383 15 H 0.472 0.528 16 N -0.280 5.280 17 C 0.534 3.466 18 O -0.553 6.553 19 C -0.124 4.124 20 S -0.147 6.147 21 C -0.545 4.545 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.267 1.267 27 H -0.279 1.279 28 H -0.259 1.259 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.286 0.714 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 29.655 -9.070 31.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.341 5.341 3 C -0.008 4.008 4 C 0.022 3.978 5 H 0.137 0.863 6 C -0.181 4.181 7 C -0.001 4.001 8 N -0.359 5.359 9 C 0.419 3.581 10 O -0.438 6.438 11 C -0.152 4.152 12 N -0.232 5.232 13 C -0.075 4.075 14 N -0.109 5.109 15 H 0.323 0.677 16 N -0.122 5.122 17 C 0.322 3.678 18 O -0.431 6.431 19 C -0.275 4.275 20 S 0.080 5.920 21 C -0.693 4.693 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.192 1.192 27 H -0.205 1.205 28 H -0.183 1.183 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.302 0.698 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.874 29.560 -8.142 30.674 hybrid contribution -1.403 -0.196 0.354 1.460 sum -0.529 29.365 -7.789 30.385 Atomic orbital electron populations 1.22128 0.76814 1.04488 1.03782 1.47704 1.08407 1.04141 1.73895 1.21529 0.97984 0.84585 0.96657 1.23301 0.99223 0.78484 0.96828 0.86316 1.23417 0.97163 0.97180 1.00386 1.23156 0.99512 0.89855 0.87562 1.49406 1.47158 1.10232 1.29070 1.16052 0.80909 0.79548 0.81591 1.90788 1.40365 1.81423 1.31192 1.23358 1.01508 0.94108 0.96255 1.71308 1.09782 1.21653 1.20494 1.27699 1.00033 0.86670 0.93120 1.45263 1.25884 1.17002 1.22728 0.67676 1.74270 1.11348 1.04506 1.22083 1.20140 0.87399 0.85129 0.75177 1.90678 1.15270 1.87256 1.49851 1.23383 1.02770 0.94863 1.06456 1.85545 1.12396 0.97033 1.97007 1.23200 0.94691 0.92705 1.58671 0.89945 1.26108 0.97551 1.01652 0.93849 1.70184 1.14041 1.22403 1.48102 0.84975 0.77921 0.76412 0.78808 1.19214 1.20459 1.18288 0.90245 0.89980 0.89593 0.91663 0.89552 0.88058 0.90239 0.87049 0.88444 0.69839 0.87729 0.87050 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 10.36 127.77 1.32 2.69 16 2 N -0.61 -17.13 2.87 -846.76 -2.43 -19.56 16 3 C 0.12 3.28 5.32 86.38 0.46 3.74 16 4 C 0.13 2.90 4.27 41.79 0.18 3.08 16 5 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 6 C -0.14 -3.20 8.01 30.93 0.25 -2.96 16 7 C 0.12 2.15 7.87 83.18 0.65 2.81 16 8 N -0.62 -14.97 3.57 -837.16 -2.99 -17.96 16 9 C 0.63 18.11 7.95 86.79 0.69 18.80 16 10 O -0.56 -19.60 16.65 -3.88 -0.06 -19.67 16 11 C 0.13 3.04 7.93 137.13 1.09 4.13 16 12 N -0.51 -8.61 9.78 -193.03 -1.89 -10.49 16 13 C 0.22 1.42 13.14 180.30 2.37 3.79 16 14 N -0.38 -3.16 6.93 -60.38 -0.42 -3.58 16 15 H 0.47 -0.59 8.96 -219.79 -1.97 -2.56 16 16 N -0.28 -5.89 12.30 -52.44 -0.64 -6.54 16 17 C 0.53 20.01 7.69 87.66 0.67 20.69 16 18 O -0.55 -25.17 15.36 -3.06 -0.05 -25.22 16 19 C -0.12 -4.90 4.65 71.24 0.33 -4.57 16 20 S -0.15 -8.10 20.57 -56.49 -1.16 -9.27 16 21 C -0.54 -30.91 9.50 67.96 0.65 -30.27 16 22 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 23 C 0.01 0.75 5.49 84.86 0.47 1.21 16 24 N -0.91 -55.79 13.22 21.65 0.29 -55.50 16 25 Si 1.00 43.49 29.55 68.60 2.03 45.51 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.59 6.28 -2.38 -0.01 1.57 16 31 H 0.09 1.43 8.00 -2.39 -0.02 1.42 16 32 H 0.06 2.21 7.00 -2.38 -0.02 2.19 16 33 H 0.09 2.48 6.96 -2.39 -0.02 2.46 16 34 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.08 2.21 7.94 -2.39 -0.02 2.20 16 36 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 1.71 7.24 -2.39 -0.02 1.69 16 38 H 0.29 -1.86 8.06 -2.91 -0.02 -1.89 16 39 H 0.10 3.82 7.41 -2.40 -0.02 3.80 16 40 H 0.11 3.92 8.11 -2.39 -0.02 3.90 16 41 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -90.89 368.98 0.91 -89.98 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -0.88 Total: 9.15 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 9.13 Total: 23.14 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -8.08 Total: -113.63 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -0.11 Total: -44.89 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.27 kcal Total: -90.89 0.91 -89.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282021985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.114 kcal (2) G-P(sol) polarization free energy of solvation -90.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds