Wall clock time and date at job start Sat Apr 11 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28704 * 126.03895 * 2 1 4 4 N 1.28512 * 110.64514 * 179.97438 * 3 2 1 5 5 C 1.33326 * 109.43485 * 0.02562 * 4 3 2 6 6 C 1.37014 * 106.37115 * 359.76911 * 5 4 3 7 7 C 1.47226 * 127.18854 * 180.24376 * 6 5 4 8 8 O 1.21617 * 119.99956 * 201.32829 * 7 6 5 9 9 N 1.34775 * 120.00324 * 21.33249 * 7 6 5 10 10 C 1.46969 * 120.59256 * 6.11544 * 9 7 6 11 11 C 1.53812 * 108.39773 * 124.75538 * 10 9 7 12 12 N 1.46964 * 108.57825 * 49.64080 * 11 10 9 13 13 C 1.34781 * 120.59502 * 124.62093 * 12 11 10 14 14 O 1.21278 * 119.99764 * 180.02562 * 13 12 11 15 15 C 1.50705 * 119.99615 * 0.02562 * 13 12 11 16 16 S 1.81004 * 109.46704 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99836 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00104 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99891 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00056 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99999 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47193 * 90.00274 * 21 19 17 23 23 H 1.48498 * 109.46851 * 210.00375 * 21 19 17 24 24 H 1.48498 * 109.47140 * 330.00031 * 21 19 17 25 25 C 1.46963 * 118.81069 * 304.64408 * 12 11 10 26 26 C 1.46964 * 120.59701 * 186.39568 * 9 7 6 27 27 H 1.09003 * 109.47683 * 95.49550 * 1 2 3 28 28 H 1.09004 * 109.47046 * 335.49445 * 1 2 3 29 29 H 1.09000 * 109.47038 * 215.49707 * 1 2 3 30 30 H 1.08000 * 126.81806 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.60678 * 244.54487 * 10 9 7 32 32 H 1.09003 * 109.60397 * 5.05054 * 10 9 7 33 33 H 1.08998 * 109.74478 * 289.84797 * 11 10 9 34 34 H 1.09002 * 109.52845 * 169.30085 * 11 10 9 35 35 H 1.08997 * 109.47013 * 299.99462 * 15 13 12 36 36 H 1.08991 * 109.47113 * 60.00237 * 15 13 12 37 37 H 0.97005 * 119.99695 * 179.97438 * 20 19 17 38 38 H 1.08994 * 109.61022 * 295.48215 * 25 12 11 39 39 H 1.09007 * 109.74989 * 175.05630 * 25 12 11 40 40 H 1.08999 * 109.61264 * 354.94482 * 26 9 7 41 41 H 1.09000 * 109.60779 * 115.45989 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0407 0.0000 4 7 3.4612 0.6996 0.0005 5 6 3.5552 -0.6304 0.0004 6 6 2.2711 -1.1082 0.0050 7 6 1.8461 -2.5178 0.0116 8 8 0.7305 -2.8184 -0.3679 9 7 2.6934 -3.4751 0.4384 10 6 3.9928 -3.1169 1.0243 11 6 4.0928 -3.7641 2.4160 12 7 3.7365 -5.1851 2.2983 13 6 4.5843 -6.1424 2.7242 14 8 4.2794 -7.3118 2.6214 15 6 5.9109 -5.7597 3.3282 16 16 6.8144 -7.2563 3.7972 17 6 8.2813 -6.5348 4.4545 18 1 8.3940 -5.4608 4.4717 19 6 9.2917 -7.3466 4.9510 20 7 9.1542 -8.6556 4.9305 21 14 10.8473 -6.5816 5.6472 22 1 10.6703 -6.3359 7.1010 23 1 11.9903 -7.5060 5.4369 24 1 11.1178 -5.2949 4.9570 25 6 2.4396 -5.5434 1.7073 26 6 2.3372 -4.8961 0.3207 27 1 -0.3634 -0.0984 -1.0229 28 1 -0.3633 0.9351 0.4263 29 1 -0.3633 -0.8367 0.5967 30 1 4.4632 -1.2150 0.0011 31 1 4.7959 -3.4872 0.3870 32 1 4.0660 -2.0333 1.1169 33 1 3.4049 -3.2701 3.1021 34 1 5.1133 -3.6725 2.7880 35 1 6.4937 -5.1976 2.5985 36 1 5.7436 -5.1439 4.2118 37 1 9.8606 -9.2229 5.2772 38 1 1.6339 -5.1761 2.3429 39 1 2.3651 -6.6268 1.6117 40 1 1.3167 -4.9878 -0.0514 41 1 3.0252 -5.3900 -0.3654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282853161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:32 Heat of formation + Delta-G solvation = 39.771937 kcal Electronic energy + Delta-G solvation = -26800.559977 eV Core-core repulsion = 22844.587360 eV Total energy + Delta-G solvation = -3955.972617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.49627 -41.58013 -40.41972 -38.20069 -35.89009 -35.21400 -34.54962 -33.66682 -31.99351 -30.81917 -29.22996 -28.57532 -27.61628 -25.38045 -25.24730 -23.61210 -23.10861 -21.42273 -20.28375 -19.61217 -18.58890 -18.28999 -17.95774 -17.81094 -17.17047 -16.94711 -16.84329 -16.71153 -16.40983 -15.79247 -15.60302 -15.34031 -14.94405 -14.69933 -14.48838 -14.33619 -14.30052 -13.89831 -13.61953 -13.43957 -13.14362 -13.10404 -12.87164 -12.69980 -12.62540 -12.43352 -12.40996 -12.28121 -11.68762 -11.37733 -11.31234 -11.11418 -10.91149 -10.59479 -10.45462 -10.21473 -9.49391 -8.63504 -8.31756 -6.09253 -0.21855 0.93213 1.13146 1.27143 1.44995 1.47127 1.55522 1.57303 1.74004 1.78472 2.11946 2.30182 2.99075 3.03007 3.25022 3.30764 3.58442 3.64678 3.67226 3.84265 3.93208 4.07925 4.11636 4.18999 4.21776 4.34618 4.42060 4.48482 4.52103 4.56249 4.59692 4.65074 4.76124 4.82592 4.89926 5.17343 5.25935 5.42422 5.45716 5.97302 6.21941 6.23963 6.69359 7.10222 7.11639 7.18735 8.77194 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018170 B = 0.002487 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.658080 B =11255.901400 C =12573.777921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.251 5.251 3 N -0.077 5.077 4 N -0.298 5.298 5 C -0.001 4.001 6 C -0.077 4.077 7 C 0.602 3.398 8 O -0.557 6.557 9 N -0.588 5.588 10 C 0.063 3.937 11 C 0.088 3.912 12 N -0.609 5.609 13 C 0.537 3.463 14 O -0.562 6.562 15 C -0.126 4.126 16 S -0.156 6.156 17 C -0.541 4.541 18 H 0.086 0.914 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.996 3.004 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.255 1.255 25 C 0.101 3.899 26 C 0.110 3.890 27 H 0.108 0.892 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.240 0.760 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.270 0.730 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.365 19.138 -10.167 27.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.049 5.049 3 N -0.057 5.057 4 N -0.159 5.159 5 C -0.162 4.162 6 C -0.212 4.212 7 C 0.389 3.611 8 O -0.435 6.435 9 N -0.320 5.320 10 C -0.059 4.059 11 C -0.035 4.035 12 N -0.344 5.344 13 C 0.325 3.675 14 O -0.440 6.440 15 C -0.277 4.277 16 S 0.072 5.928 17 C -0.689 4.689 18 H 0.104 0.896 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.818 3.182 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.179 1.179 25 C -0.022 4.022 26 C -0.012 4.012 27 H 0.127 0.873 28 H 0.145 0.855 29 H 0.126 0.874 30 H 0.256 0.744 31 H 0.122 0.878 32 H 0.153 0.847 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.129 0.871 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.368 18.652 -10.488 27.560 hybrid contribution 1.041 0.005 0.599 1.201 sum -16.327 18.657 -9.889 26.692 Atomic orbital electron populations 1.22761 0.69620 1.07422 1.06829 1.47979 1.10966 1.03013 1.42906 1.78275 0.97066 1.12048 1.18333 1.74950 1.09396 1.13774 1.17809 1.24835 0.97821 0.91278 1.02225 1.21925 0.92078 0.90531 1.16631 1.16699 0.84100 0.82789 0.77539 1.90821 1.20435 1.82728 1.49507 1.47715 1.18627 1.05980 1.59709 1.23311 0.84512 1.03762 0.94307 1.22500 1.04358 0.79010 0.97610 1.48026 1.17853 1.06845 1.61640 1.20169 0.85219 0.85093 0.77026 1.90695 1.76684 1.20121 1.56488 1.23394 0.96156 1.03606 1.04501 1.85662 1.18126 1.09280 1.79756 1.23193 1.03284 0.95791 1.46611 0.89576 1.26106 1.02355 0.95135 0.95613 1.70189 1.35051 1.04784 1.44887 0.84984 0.76223 0.78412 0.78572 1.19552 1.20665 1.17859 1.21982 0.84438 1.01907 0.93885 1.22058 1.03983 0.78475 0.96704 0.87343 0.85534 0.87433 0.74434 0.87823 0.84716 0.89316 0.86599 0.86542 0.87225 0.92126 0.90026 0.88944 0.87129 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 10.65 127.77 1.36 1.97 16 2 N -0.25 -3.91 3.79 -356.76 -1.35 -5.27 16 3 N -0.08 -1.50 13.14 37.02 0.49 -1.01 16 4 N -0.30 -5.90 12.35 -57.49 -0.71 -6.61 16 5 C 0.00 -0.02 9.78 84.18 0.82 0.81 16 6 C -0.08 -1.17 6.63 40.41 0.27 -0.90 16 7 C 0.60 9.78 7.58 86.61 0.66 10.44 16 8 O -0.56 -11.63 14.98 -4.09 -0.06 -11.69 16 9 N -0.59 -8.05 2.94 -821.25 -2.42 -10.46 16 10 C 0.06 0.62 5.51 86.56 0.48 1.09 16 11 C 0.09 1.20 6.52 86.56 0.56 1.76 16 12 N -0.61 -13.45 2.95 -817.14 -2.41 -15.85 16 13 C 0.54 17.87 7.72 87.66 0.68 18.54 16 14 O -0.56 -24.18 15.27 -3.02 -0.05 -24.23 16 15 C -0.13 -4.45 4.50 71.24 0.32 -4.13 16 16 S -0.16 -8.21 20.57 -56.49 -1.16 -9.37 16 17 C -0.54 -29.40 9.50 67.95 0.65 -28.76 16 18 H 0.09 4.27 7.80 -2.91 -0.02 4.25 16 19 C 0.01 0.69 5.49 84.86 0.47 1.16 16 20 N -0.91 -54.81 13.22 21.65 0.29 -54.52 16 21 Si 1.00 42.13 29.55 68.60 2.03 44.16 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 25 C 0.10 1.94 6.59 86.42 0.57 2.51 16 26 C 0.11 1.69 6.60 86.42 0.57 2.26 16 27 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.13 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.11 0.90 7.35 -2.39 -0.02 0.88 16 30 H 0.24 1.53 5.77 -2.91 -0.02 1.51 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.14 0.86 3.54 -2.39 -0.01 0.85 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.12 1.43 5.91 -2.39 -0.01 1.42 16 35 H 0.12 3.53 7.72 -2.40 -0.02 3.51 16 36 H 0.11 3.47 7.91 -2.40 -0.02 3.45 16 37 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 2.16 7.00 -2.38 -0.02 2.15 16 40 H 0.11 1.69 6.99 -2.39 -0.02 1.67 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -82.14 354.30 3.12 -79.02 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.08 Total: 9.08 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 7.40 Total: 6.76 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -6.11 Total: -93.73 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.11 Total: -35.92 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -82.14 3.12 -79.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282853161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.788 kcal (2) G-P(sol) polarization free energy of solvation -82.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds