Wall clock time and date at job start Sat Apr 11 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28511 * 124.44672 * 2 1 4 4 C 1.31135 * 109.06077 * 179.73477 * 3 2 1 5 5 C 1.40919 * 105.77447 * 0.42521 * 4 3 2 6 6 C 1.47799 * 127.23805 * 179.83615 * 5 4 3 7 7 O 1.21567 * 119.99847 * 359.71659 * 6 5 4 8 8 N 1.34776 * 120.00239 * 179.71298 * 6 5 4 9 9 C 1.46500 * 119.99731 * 179.97438 * 8 6 5 10 10 H 1.08993 * 110.78271 * 323.21696 * 9 8 6 11 11 C 1.55162 * 110.71772 * 199.97635 * 9 8 6 12 12 C 1.55131 * 101.48519 * 205.97395 * 11 9 8 13 13 N 1.47422 * 104.72363 * 37.29545 * 12 11 9 14 14 C 1.34778 * 125.64683 * 155.82150 * 13 12 11 15 15 O 1.21278 * 119.99748 * 179.69053 * 14 13 12 16 16 C 1.50697 * 120.00209 * 359.68866 * 14 13 12 17 17 S 1.80999 * 109.47181 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99825 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00405 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99855 * 179.72221 * 18 17 16 21 21 N 1.31634 * 119.99756 * 0.27728 * 20 18 17 22 22 Si 1.86803 * 120.00005 * 180.27923 * 20 18 17 23 23 H 1.48498 * 109.47174 * 90.00123 * 22 20 18 24 24 H 1.48501 * 109.47062 * 210.00074 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99873 * 22 20 18 26 26 C 1.47023 * 108.70279 * 335.55352 * 13 12 11 27 27 N 1.28591 * 124.44396 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47073 * 269.97929 * 1 2 3 29 29 H 1.08997 * 109.46965 * 29.97537 * 1 2 3 30 30 H 1.09003 * 109.47121 * 149.97981 * 1 2 3 31 31 H 1.08003 * 127.11280 * 180.28848 * 4 3 2 32 32 H 0.96993 * 119.99891 * 0.02562 * 8 6 5 33 33 H 1.08999 * 111.00368 * 324.20951 * 11 9 8 34 34 H 1.08999 * 111.00469 * 88.06251 * 11 9 8 35 35 H 1.09003 * 110.49405 * 278.45561 * 12 11 9 36 36 H 1.09004 * 110.34299 * 156.06238 * 12 11 9 37 37 H 1.08999 * 109.47278 * 59.99800 * 16 14 13 38 38 H 1.09002 * 109.46837 * 300.00183 * 16 14 13 39 39 H 0.97000 * 119.99219 * 179.97438 * 21 20 18 40 40 H 1.08998 * 109.88324 * 120.70745 * 26 13 12 41 41 H 1.09003 * 109.88126 * 241.86859 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4563 0.7118 0.0057 5 6 3.4659 -0.6973 -0.0006 6 6 4.6486 -1.5836 -0.0011 7 8 5.7664 -1.1056 -0.0009 8 7 4.4880 -2.9218 -0.0018 9 6 5.6604 -3.8002 -0.0029 10 1 6.4589 -3.3787 -0.6133 11 6 5.2815 -5.2207 -0.4993 12 6 6.3656 -6.0888 0.1918 13 7 6.5537 -5.4690 1.5162 14 6 7.0223 -6.0921 2.6156 15 8 7.1414 -5.4794 3.6554 16 6 7.3982 -7.5501 2.5528 17 16 7.9873 -8.0918 4.1763 18 6 8.3456 -9.7806 3.8239 19 1 8.1802 -10.1719 2.8310 20 6 8.8463 -10.6064 4.8208 21 7 9.0484 -10.1293 6.0309 22 14 9.2335 -12.3949 4.4452 23 1 10.6412 -12.5109 3.9867 24 1 9.0436 -13.2105 5.6715 25 1 8.3235 -12.8849 3.3789 26 6 6.1515 -4.0571 1.4374 27 7 2.1923 -1.0605 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.3131 1.3693 0.0116 32 1 3.5962 -3.3032 -0.0023 33 1 4.2821 -5.4980 -0.1643 34 1 5.3614 -5.2896 -1.5842 35 1 7.2959 -6.0609 -0.3756 36 1 6.0167 -7.1158 0.2997 37 1 8.1874 -7.6904 1.8141 38 1 6.5257 -8.1383 2.2685 39 1 9.3980 -10.7066 6.7276 40 1 5.3454 -3.8612 2.1444 41 1 7.0048 -3.4157 1.6580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283329980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:39 Heat of formation + Delta-G solvation = 51.422305 kcal Electronic energy + Delta-G solvation = -25624.332240 eV Core-core repulsion = 21668.864820 eV Total energy + Delta-G solvation = -3955.467420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.12276 -40.39796 -39.26058 -37.26531 -34.58333 -34.28484 -33.12204 -32.42477 -31.02170 -29.71527 -28.76083 -27.73574 -25.50207 -24.74698 -23.38161 -22.58089 -21.49852 -20.82238 -19.34848 -18.34484 -17.70939 -17.49498 -17.37380 -16.98553 -16.49790 -15.70298 -15.28971 -15.19286 -14.89940 -14.79853 -14.43632 -14.08005 -13.86809 -13.65520 -13.51349 -13.48233 -12.89830 -12.56805 -12.55217 -12.40033 -12.14468 -11.91532 -11.78782 -11.51838 -11.16025 -11.05866 -11.01786 -10.93127 -10.76533 -10.60652 -9.94165 -9.82247 -9.60621 -9.34423 -9.06254 -8.52805 -8.22577 -6.49851 -6.21135 -3.91888 0.83078 1.49829 1.64836 2.52271 2.84864 2.98489 3.07482 3.22615 3.26473 3.30584 3.43719 3.62532 4.08118 4.20395 4.30141 4.31810 4.40492 4.48169 4.65402 4.68979 4.71146 4.93648 5.07087 5.09267 5.13929 5.18769 5.41972 5.45087 5.50070 5.58555 5.63851 5.69702 5.82212 5.92053 5.99839 6.07875 6.13137 6.38919 7.00594 7.59639 7.60669 7.64191 7.75144 8.35517 8.55839 9.23960 10.86283 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027742 B = 0.001815 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.063171 B =15422.090388 C =15486.696777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.142 5.142 3 N -0.290 5.290 4 C 0.038 3.962 5 C -0.047 4.047 6 C 0.613 3.387 7 O -0.519 6.519 8 N -0.706 5.706 9 C 0.135 3.865 10 H 0.110 0.890 11 C -0.138 4.138 12 C 0.103 3.897 13 N -0.626 5.626 14 C 0.548 3.452 15 O -0.513 6.513 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.099 3.901 27 N -0.250 5.250 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.210 0.790 32 H 0.409 0.591 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.070 0.930 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.045 18.075 -19.112 31.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.045 5.045 3 N -0.130 5.130 4 C -0.145 4.145 5 C -0.210 4.210 6 C 0.396 3.604 7 O -0.392 6.392 8 N -0.358 5.358 9 C 0.030 3.970 10 H 0.128 0.872 11 C -0.177 4.177 12 C -0.021 4.021 13 N -0.365 5.365 14 C 0.337 3.663 15 O -0.386 6.386 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.026 4.026 27 N -0.099 5.099 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.227 0.773 32 H 0.245 0.755 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.326 19.251 -17.291 31.709 hybrid contribution 0.451 -1.993 -1.400 2.477 sum -17.875 17.258 -18.691 31.092 Atomic orbital electron populations 1.22301 0.69451 1.06349 1.05604 1.48060 1.09336 0.99188 1.47883 1.74058 1.03877 1.15378 1.19676 1.24897 0.94339 0.93615 1.01670 1.23006 0.91216 0.94902 1.11891 1.16621 0.86071 0.81488 0.76253 1.90862 1.23680 1.75253 1.49383 1.45748 1.10248 1.05126 1.74633 1.22056 0.88549 0.89908 0.96497 0.87194 1.23132 1.00043 0.93041 1.01436 1.22322 0.98274 0.97946 0.83567 1.48449 1.67018 1.10610 1.10385 1.20058 0.75930 0.88713 0.81643 1.90720 1.51947 1.67021 1.28962 1.23506 1.04309 0.93672 1.08186 1.85440 1.83079 1.10391 1.04493 1.22858 1.50472 0.95330 0.99673 0.90908 1.25000 0.94862 0.99303 0.94446 1.70024 1.42126 1.36345 1.01741 0.86163 0.78798 0.82534 0.77966 1.20260 1.20763 1.19701 1.22237 1.00810 0.83323 0.96188 1.74345 1.02987 1.15912 1.16645 0.88620 0.87439 0.87464 0.77331 0.75474 0.89690 0.88877 0.90731 0.89645 0.89186 0.89264 0.92180 0.91179 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.23 11.55 59.85 0.69 0.92 16 2 N -0.14 -1.05 4.35 -16.63 -0.07 -1.12 16 3 N -0.29 -2.54 12.01 30.90 0.37 -2.17 16 4 C 0.04 0.34 12.04 -16.84 -0.20 0.14 16 5 C -0.05 -0.46 7.21 -82.68 -0.60 -1.06 16 6 C 0.61 6.50 7.83 -12.35 -0.10 6.40 16 7 O -0.52 -6.98 16.68 5.31 0.09 -6.89 16 8 N -0.71 -6.06 5.13 -52.98 -0.27 -6.33 16 9 C 0.14 1.23 3.23 -66.09 -0.21 1.02 16 10 H 0.11 1.03 7.70 -51.93 -0.40 0.63 16 11 C -0.14 -0.95 6.71 -24.46 -0.16 -1.12 16 12 C 0.10 1.00 6.70 -2.41 -0.02 0.99 16 13 N -0.63 -9.07 3.32 -170.38 -0.57 -9.64 16 14 C 0.55 10.77 7.87 -10.99 -0.09 10.68 16 15 O -0.51 -12.28 16.19 5.56 0.09 -12.19 16 16 C -0.15 -2.99 5.16 36.00 0.19 -2.81 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 22 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.10 1.29 6.62 -3.06 -0.02 1.27 16 27 N -0.25 -2.16 11.84 33.42 0.40 -1.77 16 28 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.11 0.06 8.14 -51.93 -0.42 -0.37 16 31 H 0.21 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.41 2.80 8.29 -40.82 -0.34 2.46 16 33 H 0.08 0.53 8.00 -51.93 -0.42 0.12 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.80 7.48 -51.93 -0.39 0.41 16 37 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 38 H 0.09 1.67 7.85 -51.91 -0.41 1.26 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 372.60 15.07 5.61 5.61 Total: -1.00 -38.96 372.60 -6.46 -45.43 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.29 Total: -1.36 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -0.32 Total: 3.47 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.59 Total: -46.54 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.18 Total: -19.08 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.96 -6.46 -45.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283329980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.849 kcal (2) G-P(sol) polarization free energy of solvation -38.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds