Wall clock time and date at job start Sat Apr 11 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28525 * 124.44285 * 2 1 4 4 C 1.31129 * 109.05856 * 179.68637 * 3 2 1 5 5 C 1.40926 * 105.77711 * 0.43144 * 4 3 2 6 6 C 1.47801 * 127.23963 * 179.83363 * 5 4 3 7 7 O 1.21563 * 119.99921 * 359.71337 * 6 5 4 8 8 N 1.34777 * 120.00087 * 179.43801 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27945 * 8 6 5 10 10 H 1.08994 * 110.64376 * 36.68538 * 9 8 6 11 11 C 1.55156 * 110.71569 * 160.02245 * 9 8 6 12 12 C 1.54911 * 101.57867 * 153.86476 * 11 9 8 13 13 N 1.47424 * 104.83312 * 322.98736 * 12 11 9 14 14 C 1.34769 * 125.65059 * 204.09756 * 13 12 11 15 15 O 1.21282 * 120.00089 * 180.02562 * 14 13 12 16 16 C 1.50705 * 120.00141 * 0.03645 * 14 13 12 17 17 S 1.80998 * 109.47138 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99763 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00368 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00069 * 180.02562 * 18 17 16 21 21 N 1.31635 * 119.99911 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00247 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47333 * 59.99387 * 22 20 18 24 24 H 1.48501 * 109.47222 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47001 * 299.99590 * 22 20 18 26 26 C 1.47028 * 108.70265 * 24.12998 * 13 12 11 27 27 N 1.28590 * 124.44669 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47512 * 270.02865 * 1 2 3 29 29 H 1.09003 * 109.46925 * 30.02529 * 1 2 3 30 30 H 1.08999 * 109.46928 * 150.02042 * 1 2 3 31 31 H 1.08000 * 127.11489 * 180.28969 * 4 3 2 32 32 H 0.97000 * 119.99736 * 0.27219 * 8 6 5 33 33 H 1.09000 * 111.00010 * 271.93168 * 11 9 8 34 34 H 1.08990 * 111.00785 * 35.78771 * 11 9 8 35 35 H 1.09003 * 110.36805 * 204.15120 * 12 11 9 36 36 H 1.09000 * 110.36962 * 81.82412 * 12 11 9 37 37 H 1.09000 * 109.47217 * 300.00529 * 16 14 13 38 38 H 1.08994 * 109.46812 * 60.00265 * 16 14 13 39 39 H 0.97000 * 119.99760 * 179.97438 * 21 20 18 40 40 H 1.09000 * 109.88033 * 239.53034 * 26 13 12 41 41 H 1.08992 * 110.01142 * 118.42849 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4562 0.7121 0.0068 5 6 3.4659 -0.6971 0.0010 6 6 4.6487 -1.5834 0.0016 7 8 5.7664 -1.1054 0.0023 8 7 4.4881 -2.9216 0.0069 9 6 5.6605 -3.8000 0.0137 10 1 6.4569 -3.3733 0.6232 11 6 5.2806 -5.2185 0.5146 12 6 6.3610 -6.0906 -0.1724 13 7 6.5570 -5.4744 -1.4973 14 6 7.0277 -6.1016 -2.5934 15 8 7.1486 -5.4928 -3.6354 16 6 7.4036 -7.5594 -2.5244 17 16 7.9972 -8.1067 -4.1443 18 6 8.3561 -9.7938 -3.7845 19 1 8.1878 -10.1817 -2.7908 20 6 8.8551 -10.6244 -4.7784 21 7 9.0599 -10.1518 -5.9898 22 14 9.2349 -12.4132 -4.3972 23 1 7.9963 -13.0971 -3.9465 24 1 9.7519 -13.0807 -5.6189 25 1 10.2581 -12.4840 -3.3233 26 6 6.1546 -4.0622 -1.4246 27 7 2.1923 -1.0604 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 4.3130 1.3695 0.0130 32 1 3.5962 -3.3030 0.0063 33 1 5.3583 -5.2833 1.5999 34 1 4.2819 -5.4971 0.1786 35 1 6.0087 -7.1165 -0.2796 36 1 7.2890 -6.0650 0.3988 37 1 8.1913 -7.6968 -1.7837 38 1 6.5306 -8.1465 -2.2396 39 1 9.4090 -10.7322 -6.6842 40 1 5.3498 -3.8691 -2.1340 41 1 7.0065 -3.4197 -1.6468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283874296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:42 Heat of formation + Delta-G solvation = 51.382781 kcal Electronic energy + Delta-G solvation = -25623.601517 eV Core-core repulsion = 21668.132383 eV Total energy + Delta-G solvation = -3955.469133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.12157 -40.40125 -39.26177 -37.26826 -34.58408 -34.28549 -33.12266 -32.42299 -31.02566 -29.72297 -28.76241 -27.73759 -25.49958 -24.74699 -23.37896 -22.58129 -21.49915 -20.82287 -19.35189 -18.34550 -17.70850 -17.50099 -17.36840 -16.98392 -16.49899 -15.70413 -15.28335 -15.20105 -14.89745 -14.79650 -14.43697 -14.07855 -13.86667 -13.65950 -13.51704 -13.48161 -12.89566 -12.56778 -12.55496 -12.40156 -12.14329 -11.91910 -11.78628 -11.51924 -11.16098 -11.03741 -11.03336 -10.93185 -10.77040 -10.60680 -9.94268 -9.82997 -9.60665 -9.34429 -9.05399 -8.52801 -8.22893 -6.49759 -6.20776 -3.91699 0.82971 1.49789 1.64762 2.52377 2.84524 2.98593 3.07479 3.23767 3.26397 3.29643 3.43778 3.62488 4.08222 4.20703 4.30300 4.32193 4.39716 4.48291 4.65391 4.68974 4.70850 4.93891 5.07110 5.09221 5.14112 5.18743 5.41967 5.45102 5.50020 5.58642 5.63851 5.69773 5.82331 5.92146 5.99779 6.07705 6.13197 6.38869 7.00529 7.59472 7.60589 7.64173 7.75087 8.35492 8.55831 9.24102 10.86575 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027791 B = 0.001814 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.278470 B =15430.838355 C =15491.585848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.142 5.142 3 N -0.290 5.290 4 C 0.038 3.962 5 C -0.047 4.047 6 C 0.613 3.387 7 O -0.519 6.519 8 N -0.706 5.706 9 C 0.135 3.865 10 H 0.110 0.890 11 C -0.138 4.138 12 C 0.103 3.897 13 N -0.626 5.626 14 C 0.548 3.452 15 O -0.513 6.513 16 C -0.146 4.146 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.099 3.901 27 N -0.250 5.250 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.210 0.790 32 H 0.409 0.591 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.070 0.930 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.092 18.138 18.921 31.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.045 5.045 3 N -0.130 5.130 4 C -0.145 4.145 5 C -0.210 4.210 6 C 0.396 3.604 7 O -0.392 6.392 8 N -0.358 5.358 9 C 0.030 3.970 10 H 0.128 0.872 11 C -0.176 4.176 12 C -0.021 4.021 13 N -0.364 5.364 14 C 0.337 3.663 15 O -0.387 6.387 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.026 4.026 27 N -0.099 5.099 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.227 0.773 32 H 0.245 0.755 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.364 19.309 17.086 31.654 hybrid contribution 0.430 -1.991 1.448 2.499 sum -17.934 17.318 18.534 31.065 Atomic orbital electron populations 1.22299 0.69455 1.06480 1.05468 1.48062 1.09334 0.99186 1.47898 1.74061 1.03880 1.15372 1.19669 1.24896 0.94342 0.93614 1.01666 1.23010 0.91217 0.94900 1.11891 1.16620 0.86070 0.81487 0.76254 1.90861 1.23683 1.75252 1.49382 1.45757 1.10254 1.05128 1.74631 1.22060 0.88520 0.89916 0.96499 0.87188 1.23089 1.00073 0.93036 1.01449 1.22276 0.98290 0.97950 0.83586 1.48442 1.66921 1.10570 1.10501 1.20058 0.75941 0.88674 0.81670 1.90721 1.51980 1.67233 1.28718 1.23507 1.04305 0.93671 1.08192 1.85436 1.82893 1.10384 1.04652 1.22817 1.50587 0.95354 0.99643 0.90958 1.24996 0.94854 0.99293 0.94442 1.70012 1.42067 1.36379 1.01790 0.86220 0.78772 0.82586 0.77892 1.19957 1.20814 1.19926 1.22232 1.00814 0.83315 0.96215 1.74347 1.02985 1.15913 1.16632 0.88695 0.87414 0.87425 0.77332 0.75478 0.88851 0.89710 0.89646 0.90753 0.89182 0.89271 0.92121 0.91203 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.23 11.55 59.85 0.69 0.92 16 2 N -0.14 -1.05 4.35 -16.64 -0.07 -1.12 16 3 N -0.29 -2.54 12.01 30.90 0.37 -2.17 16 4 C 0.04 0.34 12.04 -16.84 -0.20 0.14 16 5 C -0.05 -0.46 7.21 -82.68 -0.60 -1.06 16 6 C 0.61 6.50 7.83 -12.35 -0.10 6.40 16 7 O -0.52 -6.98 16.68 5.31 0.09 -6.89 16 8 N -0.71 -6.06 5.13 -52.98 -0.27 -6.33 16 9 C 0.14 1.23 3.24 -66.09 -0.21 1.02 16 10 H 0.11 1.03 7.69 -51.93 -0.40 0.64 16 11 C -0.14 -0.95 6.69 -24.58 -0.16 -1.12 16 12 C 0.10 1.00 6.69 -2.53 -0.02 0.99 16 13 N -0.63 -9.07 3.33 -170.52 -0.57 -9.63 16 14 C 0.55 10.76 7.87 -10.99 -0.09 10.68 16 15 O -0.51 -12.28 16.19 5.56 0.09 -12.19 16 16 C -0.15 -2.99 5.16 36.01 0.19 -2.81 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 22 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.10 1.28 6.62 -3.06 -0.02 1.26 16 27 N -0.25 -2.16 11.84 33.42 0.40 -1.77 16 28 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.11 0.09 8.14 -51.93 -0.42 -0.34 16 31 H 0.21 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.41 2.80 8.29 -40.82 -0.34 2.46 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.53 8.00 -51.93 -0.42 0.12 16 35 H 0.09 0.80 7.48 -51.93 -0.39 0.41 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 38 H 0.09 1.67 7.85 -51.92 -0.41 1.26 16 39 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -38.93 372.57 -6.47 -45.39 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.29 Total: -1.32 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -0.32 Total: 3.46 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.59 Total: -46.54 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.18 Total: -19.08 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.93 -6.47 -45.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283874296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.775 kcal (2) G-P(sol) polarization free energy of solvation -38.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds