Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34814 * 126.59660 * 2 1 4 4 C 1.36587 * 106.83837 * 179.73763 * 3 2 1 5 5 C 1.47527 * 125.76962 * 180.02562 * 4 3 2 6 6 O 1.21595 * 119.99901 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00007 * 179.97438 * 5 4 3 8 8 C 1.47017 * 125.65049 * 359.69187 * 7 5 4 9 9 C 1.54337 * 107.27069 * 178.85198 * 8 7 5 10 10 C 1.55159 * 103.01469 * 338.13598 * 9 8 7 11 11 H 1.08996 * 111.00583 * 277.23513 * 10 9 8 12 12 N 1.46506 * 111.03574 * 153.39411 * 10 9 8 13 13 C 1.34772 * 120.00012 * 161.32918 * 12 10 9 14 14 O 1.21290 * 120.00121 * 0.02562 * 13 12 10 15 15 C 1.50694 * 120.00343 * 180.02562 * 13 12 10 16 16 S 1.81004 * 109.47456 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99894 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00362 * 0.02562 * 17 16 15 19 19 C 1.38802 * 120.00026 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99957 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00316 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47259 * 89.99681 * 21 19 17 23 23 H 1.48492 * 109.47246 * 209.99722 * 21 19 17 24 24 H 1.48502 * 109.46746 * 330.00223 * 21 19 17 25 25 C 1.47427 * 125.64650 * 179.97438 * 7 5 4 26 26 N 1.34399 * 108.46491 * 359.97438 * 4 3 2 27 27 N 1.28767 * 109.52059 * 0.02562 * 26 4 3 28 28 H 1.09006 * 109.47073 * 89.99626 * 1 2 3 29 29 H 1.08998 * 109.47663 * 209.99766 * 1 2 3 30 30 H 1.09001 * 109.47075 * 330.00431 * 1 2 3 31 31 H 1.07995 * 126.57732 * 359.71425 * 3 2 1 32 32 H 1.09007 * 109.88002 * 298.39366 * 8 7 5 33 33 H 1.08996 * 109.88779 * 59.55875 * 8 7 5 34 34 H 1.08998 * 110.85292 * 219.67668 * 9 8 7 35 35 H 1.09000 * 110.67020 * 96.51596 * 9 8 7 36 36 H 0.96992 * 120.00121 * 341.33698 * 12 10 9 37 37 H 1.09007 * 109.47035 * 300.00315 * 15 13 12 38 38 H 1.08997 * 109.47668 * 59.99733 * 15 13 12 39 39 H 0.96994 * 120.00048 * 179.97438 * 20 19 17 40 40 H 1.09000 * 110.36634 * 322.92882 * 25 7 5 41 41 H 1.09000 * 110.36755 * 85.14587 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5542 0.6206 0.0060 5 6 4.7704 1.4557 0.0087 6 8 4.6755 2.6679 0.0051 7 7 5.9865 0.8749 0.0152 8 6 6.2449 -0.5724 0.0266 9 6 7.7760 -0.7647 0.0012 10 6 8.2871 0.5775 -0.5859 11 1 8.2315 0.5742 -1.6745 12 7 9.6507 0.8641 -0.1334 13 6 10.4089 1.7559 -0.8014 14 8 9.9623 2.3215 -1.7770 15 6 11.8118 2.0503 -0.3364 16 16 12.5646 3.2801 -1.4305 17 6 14.1497 3.4313 -0.6761 18 1 14.3890 2.8462 0.1996 19 6 15.0912 4.3015 -1.2078 20 7 14.8001 5.0135 -2.2760 21 14 16.7720 4.4613 -0.4085 22 1 17.7041 3.4771 -1.0148 23 1 17.2938 5.8348 -0.6235 24 1 16.6541 4.1989 1.0484 25 6 7.2781 1.5857 0.0181 26 7 3.5238 -0.7230 0.0101 27 7 2.3008 -1.1258 0.0065 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9561 2.1161 -0.0043 32 1 5.8286 -1.0162 0.9310 33 1 5.8004 -1.0353 -0.8544 34 1 8.0517 -1.5981 -0.6450 35 1 8.1615 -0.9163 1.0094 36 1 10.0079 0.4121 0.6469 37 1 11.7830 2.4393 0.6815 38 1 12.4018 1.1342 -0.3585 39 1 15.4579 5.6220 -2.6474 40 1 7.2198 2.4810 -0.6009 41 1 7.5648 1.8475 1.0366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284008342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = 8.597000 kcal Electronic energy + Delta-G solvation = -25650.731787 eV Core-core repulsion = 21693.407323 eV Total energy + Delta-G solvation = -3957.324464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.25737 -41.28417 -40.31602 -38.48453 -35.73529 -35.24831 -34.56533 -32.52982 -31.82272 -30.71958 -29.48738 -28.38811 -27.62950 -25.58558 -23.52888 -23.24195 -22.38161 -21.72222 -20.82468 -19.84770 -18.85012 -18.09217 -17.61098 -17.39683 -17.10871 -16.86566 -16.84663 -16.36910 -16.29366 -15.70692 -15.61432 -15.21028 -14.74432 -14.51309 -14.45329 -14.24716 -14.14897 -13.88299 -13.82031 -13.47069 -13.21665 -13.14721 -12.88146 -12.84838 -12.60917 -12.53116 -12.16937 -11.86811 -11.70465 -11.38388 -11.33557 -11.12569 -10.97916 -10.43472 -10.26241 -10.24582 -9.75039 -8.64691 -8.32915 -6.10834 0.10937 0.55140 1.12610 1.27413 1.43895 1.46676 1.55790 1.59112 1.77433 2.11637 2.28277 2.33574 3.01356 3.04539 3.31354 3.35997 3.49147 3.59486 3.84719 3.92887 3.98732 4.00222 4.18412 4.28800 4.34716 4.37719 4.42171 4.54663 4.60347 4.68765 4.74155 4.78793 4.83146 4.96521 5.11705 5.15647 5.41657 5.43810 5.46352 6.21639 6.28689 6.50389 6.75091 6.98792 7.08484 7.24308 8.76284 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.038668 B = 0.001772 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.930913 B =15799.407735 C =16205.058545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.350 5.350 3 C 0.110 3.890 4 C -0.125 4.125 5 C 0.612 3.388 6 O -0.575 6.575 7 N -0.605 5.605 8 C 0.114 3.886 9 C -0.121 4.121 10 C 0.138 3.862 11 H 0.083 0.917 12 N -0.699 5.699 13 C 0.536 3.464 14 O -0.563 6.563 15 C -0.129 4.129 16 S -0.155 6.155 17 C -0.545 4.545 18 H 0.085 0.915 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.257 1.257 25 C 0.098 3.902 26 N -0.214 5.214 27 N -0.090 5.090 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.234 0.766 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.423 0.577 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.270 0.730 40 H 0.051 0.949 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.180 -16.593 10.308 35.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.134 5.134 3 C -0.048 4.048 4 C -0.264 4.264 5 C 0.400 3.600 6 O -0.454 6.454 7 N -0.337 5.337 8 C -0.008 4.008 9 C -0.159 4.159 10 C 0.031 3.969 11 H 0.102 0.898 12 N -0.353 5.353 13 C 0.322 3.678 14 O -0.440 6.440 15 C -0.280 4.280 16 S 0.072 5.928 17 C -0.693 4.693 18 H 0.103 0.897 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.821 3.179 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.181 1.181 25 C -0.027 4.027 26 N -0.088 5.088 27 N -0.071 5.071 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.147 0.853 31 H 0.251 0.749 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.261 0.739 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -30.026 -16.446 8.580 35.294 hybrid contribution 1.451 0.855 1.348 2.158 sum -28.574 -15.591 9.928 34.032 Atomic orbital electron populations 1.22742 0.69220 1.07883 1.06621 1.50711 1.10753 1.04462 1.47487 1.23797 0.89129 0.96364 0.95548 1.21219 0.94495 0.90574 1.20134 1.16718 0.81490 0.85782 0.75973 1.90815 1.86645 1.14573 1.53354 1.48163 1.04466 1.09451 1.71633 1.22214 0.95961 0.78756 1.03880 1.22999 0.93001 0.95603 1.04324 1.21940 0.80270 0.95145 0.99513 0.89842 1.45539 1.13302 1.43579 1.32900 1.20149 0.86738 0.78473 0.82440 1.90721 1.74058 1.51009 1.28259 1.23369 0.95533 1.04468 1.04611 1.85641 1.14558 1.52166 1.40431 1.23219 0.99436 1.29690 1.16982 0.89728 1.26136 1.03591 0.94080 0.95404 1.70190 1.36824 1.25414 1.22439 0.84946 0.76358 0.77722 0.78903 1.19273 1.20471 1.18128 1.22584 0.82447 0.95997 1.01632 1.74666 1.13465 1.10226 1.10416 1.81925 0.93661 1.07936 1.23582 0.87456 0.87051 0.85311 0.74943 0.89269 0.90370 0.86835 0.87104 0.73879 0.86997 0.86692 0.92057 0.92987 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.05 11.51 127.77 1.47 1.42 16 2 N -0.35 -3.74 4.03 -368.60 -1.49 -5.22 16 3 C 0.11 1.46 11.31 83.85 0.95 2.41 16 4 C -0.12 -2.58 6.85 40.82 0.28 -2.30 16 5 C 0.61 16.20 7.85 86.69 0.68 16.88 16 6 O -0.57 -18.91 17.12 -4.01 -0.07 -18.98 16 7 N -0.60 -14.32 3.33 -815.55 -2.71 -17.03 16 8 C 0.11 1.88 5.52 86.73 0.48 2.36 16 9 C -0.12 -1.53 6.58 31.79 0.21 -1.33 16 10 C 0.14 3.05 3.32 46.38 0.15 3.21 16 11 H 0.08 2.28 7.73 -2.39 -0.02 2.26 16 12 N -0.70 -16.27 5.23 -435.98 -2.28 -18.55 16 13 C 0.54 19.22 7.85 87.66 0.69 19.91 16 14 O -0.56 -26.11 15.61 -3.06 -0.05 -26.16 16 15 C -0.13 -4.95 6.16 71.23 0.44 -4.51 16 16 S -0.16 -8.62 20.57 -56.49 -1.16 -9.78 16 17 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16 18 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 19 C 0.01 0.71 5.49 84.86 0.47 1.18 16 20 N -0.91 -56.45 13.22 21.65 0.29 -56.16 16 21 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 25 C 0.10 2.53 6.60 86.85 0.57 3.10 16 26 N -0.21 -4.40 9.78 -50.00 -0.49 -4.89 16 27 N -0.09 -1.63 13.79 37.02 0.51 -1.12 16 28 H 0.11 -0.33 8.14 -2.38 -0.02 -0.35 16 29 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.13 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.23 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.09 1.33 7.75 -2.38 -0.02 1.31 16 33 H 0.08 1.34 7.60 -2.39 -0.02 1.32 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.11 0.88 8.00 -2.39 -0.02 0.87 16 36 H 0.42 6.36 8.51 -92.71 -0.79 5.57 16 37 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 38 H 0.11 3.88 8.14 -2.40 -0.02 3.87 16 39 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 40 H 0.05 1.75 8.04 -2.39 -0.02 1.73 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -90.66 370.86 1.89 -88.77 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.28 Total: 11.54 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 7.03 Total: 11.88 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -6.17 Total: -102.98 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -0.12 Total: -45.14 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -90.66 1.89 -88.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284008342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.363 kcal (2) G-P(sol) polarization free energy of solvation -90.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds