Wall clock time and date at job start Sat Apr 11 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99712 * 2 1 4 4 O 1.21576 * 120.00364 * 354.95124 * 3 2 1 5 5 C 1.47751 * 119.99880 * 174.95202 * 3 2 1 6 6 C 1.39351 * 124.11435 * 174.91199 * 5 3 2 7 7 N 1.30098 * 112.14198 * 179.97438 * 6 5 3 8 8 S 1.55916 * 108.75476 * 359.97438 * 7 6 5 9 9 N 1.31488 * 124.11638 * 354.61019 * 5 3 2 10 10 C 1.46493 * 120.00394 * 179.72152 * 2 1 3 11 11 C 1.53789 * 113.61244 * 95.21512 * 10 2 1 12 12 C 1.54047 * 86.98781 * 270.84135 * 11 10 2 13 13 N 1.46896 * 113.69764 * 220.01048 * 12 11 10 14 14 C 1.46903 * 111.00112 * 252.53519 * 13 12 11 15 15 C 1.50699 * 109.47222 * 179.97438 * 14 13 12 16 16 O 1.21300 * 119.99854 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00061 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99871 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00302 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99870 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99922 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99956 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47148 * 60.00173 * 22 20 18 24 24 H 1.48503 * 109.47232 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47193 * 300.00056 * 22 20 18 26 26 C 1.53784 * 87.08011 * 334.57000 * 12 11 10 27 27 H 1.08997 * 109.46699 * 95.42654 * 1 2 3 28 28 H 1.08994 * 109.46896 * 215.42763 * 1 2 3 29 29 H 1.09003 * 109.46956 * 335.43177 * 1 2 3 30 30 H 1.08000 * 123.92913 * 0.02562 * 6 5 3 31 31 H 1.08997 * 112.85220 * 226.42005 * 10 2 1 32 32 H 1.09000 * 113.61353 * 25.43982 * 11 10 2 33 33 H 1.09000 * 113.60989 * 156.34144 * 11 10 2 34 34 H 1.09000 * 113.61268 * 89.11256 * 12 11 10 35 35 H 1.00901 * 111.00038 * 128.58238 * 13 12 11 36 36 H 1.09003 * 109.47000 * 299.99757 * 14 13 12 37 37 H 1.09003 * 109.46894 * 59.99768 * 14 13 12 38 38 H 0.96997 * 120.00105 * 359.97438 * 17 15 14 39 39 H 0.96999 * 119.99863 * 179.97438 * 21 20 18 40 40 H 1.09000 * 113.61749 * 270.88023 * 26 12 11 41 41 H 1.08994 * 113.61494 * 139.97500 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5345 2.2181 -0.0927 5 6 3.6121 1.1698 0.1126 6 6 4.4010 2.3147 0.0197 7 7 5.6677 2.0494 0.1529 8 16 5.8382 0.5153 0.3726 9 7 4.3378 0.0928 0.3183 10 6 2.1976 -1.2686 0.0062 11 6 2.6165 -1.7448 -1.3948 12 6 1.2583 -2.4681 -1.4663 13 7 1.3290 -3.7968 -2.0888 14 6 0.7250 -3.7836 -3.4278 15 6 0.8165 -5.1604 -4.0338 16 8 1.3336 -6.0639 -3.4112 17 7 0.3238 -5.3878 -5.2674 18 6 0.4066 -6.6404 -5.8184 19 1 0.8670 -7.4448 -5.2641 20 6 -0.1019 -6.8750 -7.0902 21 7 -0.6625 -5.8962 -7.7644 22 14 0.0116 -8.5816 -7.8412 23 1 -0.7137 -9.5504 -6.9806 24 1 -0.5996 -8.5684 -9.1946 25 1 1.4375 -8.9827 -7.9454 26 6 1.2864 -2.5058 0.0708 27 1 -0.3632 -0.0972 -1.0231 28 1 -0.3633 -0.8374 0.5957 29 1 -0.3633 0.9347 0.4273 30 1 4.0068 3.3069 -0.1431 31 1 3.0089 -1.2854 0.7339 32 1 2.7207 -0.9359 -2.1179 33 1 3.4714 -2.4210 -1.3886 34 1 0.4565 -1.8521 -1.8733 35 1 0.8946 -4.4941 -1.5030 36 1 -0.3216 -3.4887 -3.3514 37 1 1.2576 -3.0728 -4.0597 38 1 -0.0901 -4.6654 -5.7651 39 1 -1.0172 -6.0599 -8.6523 40 1 1.7782 -3.3896 0.4771 41 1 0.3173 -2.3108 0.5301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284744664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:51 Heat of formation + Delta-G solvation = 13.452329 kcal Electronic energy + Delta-G solvation = -26440.059635 eV Core-core repulsion = 22482.945713 eV Total energy + Delta-G solvation = -3957.113921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.39401 -40.96083 -40.10861 -39.36968 -36.33653 -35.78327 -34.60995 -33.78678 -33.20651 -29.64025 -28.56536 -27.70997 -26.43401 -26.13212 -24.32676 -23.30750 -21.64315 -21.08330 -20.47433 -20.00552 -19.82096 -18.16662 -17.73042 -17.32640 -17.17198 -16.87034 -16.70869 -16.36284 -16.20293 -16.03251 -15.68238 -15.51850 -15.07060 -14.69657 -14.16299 -14.03436 -13.58225 -13.52333 -13.31078 -13.19860 -12.93663 -12.86186 -12.69539 -12.62712 -12.44456 -12.40471 -12.24060 -12.12421 -12.09989 -11.51049 -11.47562 -11.39599 -10.96156 -10.33332 -10.23869 -10.02429 -9.67976 -9.31573 -8.46996 -5.96025 -0.62372 0.38268 0.47502 0.65324 1.39793 1.41682 1.52740 1.80167 1.96603 2.04635 2.28986 2.95853 3.19497 3.20313 3.47874 3.50368 3.55537 3.65178 3.95177 4.06676 4.15335 4.27792 4.33597 4.45483 4.48918 4.51038 4.56894 4.70222 4.76970 4.88616 5.00729 5.04870 5.09888 5.21589 5.33556 5.40362 5.48366 5.92090 6.12848 6.20157 6.45127 6.59315 6.86305 7.11795 7.55549 8.10420 8.70237 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019289 B = 0.002110 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.225563 B =13265.994266 C =13766.138845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.577 5.577 3 C 0.602 3.398 4 O -0.555 6.555 5 C -0.004 4.004 6 C 0.087 3.913 7 N -0.600 5.600 8 S 0.774 5.226 9 N -0.544 5.544 10 C 0.121 3.879 11 C -0.124 4.124 12 C 0.055 3.945 13 N -0.666 5.666 14 C 0.065 3.935 15 C 0.438 3.562 16 O -0.621 6.621 17 N -0.574 5.574 18 C -0.334 4.334 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.922 5.922 22 Si 0.993 3.007 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.136 4.136 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.222 0.778 31 H 0.130 0.870 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.348 0.652 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.109 0.891 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.277 16.163 18.638 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.308 5.308 3 C 0.386 3.614 4 O -0.433 6.433 5 C -0.177 4.177 6 C -0.104 4.104 7 N -0.441 5.441 8 S 0.817 5.183 9 N -0.396 5.396 10 C 0.016 3.984 11 C -0.164 4.164 12 C -0.055 4.055 13 N -0.299 5.299 14 C -0.067 4.067 15 C 0.226 3.774 16 O -0.508 6.508 17 N -0.211 5.211 18 C -0.464 4.464 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.563 5.563 22 Si 0.817 3.183 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.174 4.174 27 H 0.079 0.921 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.238 0.762 31 H 0.147 0.853 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.168 0.832 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.229 0.771 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.577 15.090 18.859 25.983 hybrid contribution -2.615 0.655 -1.174 2.941 sum 6.962 15.746 17.685 24.681 Atomic orbital electron populations 1.21994 0.77389 1.04521 1.02950 1.47457 1.07691 1.05180 1.70468 1.16929 0.84069 0.83680 0.76745 1.90813 1.68746 1.31762 1.51968 1.22247 0.97094 0.88707 1.09662 1.23867 0.85638 1.02463 0.98480 1.72181 1.24026 1.24011 1.23929 1.79049 1.04380 0.91485 1.43413 1.72766 1.12123 1.33833 1.20855 1.22276 0.95429 0.81603 0.99053 1.23423 0.98135 0.98701 0.96145 1.23321 0.97845 0.89550 0.94760 1.60203 1.60781 1.06616 1.02265 1.21563 0.99111 0.93463 0.92587 1.20859 0.82578 0.91421 0.82539 1.90487 1.49761 1.47578 1.62948 1.41950 1.52907 1.11386 1.14887 1.19643 1.38105 0.88642 0.99981 0.90198 1.26063 0.95806 1.03205 0.96280 1.69670 1.39248 1.33671 1.13666 0.84983 0.78709 0.77210 0.77417 1.19534 1.19566 1.19701 1.23618 1.01398 0.97797 0.94611 0.92061 0.88171 0.90335 0.76165 0.85308 0.93335 0.88903 0.90570 0.83189 0.91624 0.88783 0.77073 0.91297 0.87224 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 9.28 127.77 1.19 2.26 16 2 N -0.58 -10.48 3.03 -823.13 -2.49 -12.97 16 3 C 0.60 12.85 7.67 86.76 0.67 13.52 16 4 O -0.55 -14.44 16.36 -3.96 -0.06 -14.50 16 5 C 0.00 -0.08 6.62 41.98 0.28 0.20 16 6 C 0.09 1.44 11.22 85.22 0.96 2.40 16 7 N -0.60 -9.69 11.41 -92.45 -1.05 -10.74 16 8 S 0.77 9.30 23.69 -56.49 -1.34 7.96 16 9 N -0.54 -8.74 7.54 -80.60 -0.61 -9.35 16 10 C 0.12 2.06 3.24 45.52 0.15 2.20 16 11 C -0.12 -2.63 7.37 31.21 0.23 -2.40 16 12 C 0.05 1.18 3.79 45.53 0.17 1.35 16 13 N -0.67 -19.75 6.19 -492.38 -3.05 -22.79 16 14 C 0.07 2.21 6.01 85.56 0.51 2.73 16 15 C 0.44 20.71 7.82 87.66 0.69 21.39 16 16 O -0.62 -33.97 15.78 -3.09 -0.05 -34.02 16 17 N -0.57 -29.49 5.29 -306.98 -1.62 -31.12 16 18 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 20 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 21 N -0.92 -49.91 13.05 21.66 0.28 -49.62 16 22 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 C -0.14 -2.14 6.89 31.12 0.21 -1.92 16 27 H 0.06 0.93 7.31 -2.39 -0.02 0.91 16 28 H 0.10 1.04 5.74 -2.39 -0.01 1.03 16 29 H 0.08 1.25 7.34 -2.39 -0.02 1.23 16 30 H 0.22 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.13 2.13 5.83 -2.39 -0.01 2.12 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.08 1.59 6.61 -2.39 -0.02 1.57 16 35 H 0.35 10.56 8.25 -89.69 -0.74 9.82 16 36 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 37 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 39 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 40 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.10 1.17 5.70 -2.39 -0.01 1.15 16 Total: -1.00 -71.57 357.18 -1.99 -73.56 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: -0.35 Total: 35.47 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: 6.33 Total: 23.30 kcal Atomic # 7 Polarization: -128.05 SS G_CDS: -8.54 Total: -136.59 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.11 Total: -48.53 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 9.30 SS G_CDS: -1.34 Total: 7.96 kcal Total: -71.57 -1.99 -73.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284744664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.017 kcal (2) G-P(sol) polarization free energy of solvation -71.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds