Wall clock time and date at job start Sat Apr 11 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46447 * 2 1 4 4 C 1.52993 * 109.47260 * 240.00095 * 2 1 3 5 5 N 1.46500 * 109.47195 * 185.00091 * 4 2 1 6 6 C 1.34775 * 120.00156 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99866 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99949 * 180.02562 * 6 5 4 9 9 S 1.81004 * 109.47115 * 179.97438 * 8 6 5 10 10 C 1.76204 * 100.00105 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99754 * 359.97438 * 10 9 8 12 12 C 1.38797 * 119.99708 * 180.02562 * 10 9 8 13 13 N 1.31626 * 120.00466 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99608 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47168 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47485 * 119.99960 * 14 12 10 17 17 H 1.48503 * 109.46938 * 240.00114 * 14 12 10 18 18 N 1.46500 * 109.46935 * 119.99447 * 2 1 3 19 19 C 1.34768 * 120.00445 * 275.00209 * 18 2 1 20 20 O 1.21572 * 120.00207 * 0.02562 * 19 18 2 21 21 C 1.47730 * 120.00197 * 179.97438 * 19 18 2 22 22 N 1.33018 * 120.16046 * 354.44825 * 21 19 18 23 23 C 1.31734 * 120.00914 * 179.97438 * 22 21 19 24 24 C 1.38800 * 120.34318 * 0.02562 * 23 22 21 25 25 N 1.32040 * 120.32708 * 359.97421 * 24 23 22 26 26 C 1.32831 * 119.98004 * 0.02562 * 25 24 23 27 27 N 1.38268 * 120.16542 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.46690 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46988 * 300.00141 * 1 2 3 30 30 H 1.09003 * 109.46978 * 59.99957 * 1 2 3 31 31 H 1.09001 * 109.47075 * 305.00098 * 4 2 1 32 32 H 1.08996 * 109.47397 * 64.99624 * 4 2 1 33 33 H 0.96995 * 119.99935 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.47009 * 299.99266 * 8 6 5 35 35 H 1.09000 * 109.47498 * 59.99923 * 8 6 5 36 36 H 0.96998 * 120.00665 * 180.02562 * 13 12 10 37 37 H 0.97004 * 119.99359 * 95.00184 * 18 2 1 38 38 H 1.07994 * 119.82972 * 180.02562 * 23 22 21 39 39 H 1.07997 * 119.83838 * 179.97438 * 24 23 22 40 40 H 0.97003 * 120.00209 * 5.38856 * 27 26 25 41 41 H 0.96999 * 120.00042 * 185.38273 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.1732 -1.4282 -2.1911 7 8 3.5701 -1.8832 -3.1399 8 6 5.6750 -1.5368 -2.1304 9 16 6.2785 -2.3899 -3.6083 10 6 8.0103 -2.3770 -3.2835 11 1 8.3865 -1.9238 -2.3782 12 6 8.8909 -2.9483 -4.1915 13 7 8.4325 -3.4992 -5.2956 14 14 10.7268 -2.9352 -3.8468 15 1 10.9819 -2.2601 -2.5489 16 1 11.2291 -4.3313 -3.7862 17 1 11.4289 -2.2031 -4.9314 18 7 2.0184 -0.6905 1.1962 19 6 2.1470 -0.0182 2.3571 20 8 1.8575 1.1613 2.4119 21 6 2.6389 -0.7147 3.5635 22 7 2.8507 -2.0276 3.5375 23 6 3.2898 -2.6456 4.6149 24 6 3.5334 -1.9338 5.7813 25 7 3.3277 -0.6301 5.8221 26 6 2.8851 0.0060 4.7433 27 7 2.6679 1.3710 4.7818 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6055 -1.7197 -1.2951 32 1 1.7517 -0.1583 -2.1369 33 1 3.9825 -0.4621 -0.4319 34 1 6.1099 -0.5384 -2.0838 35 1 5.9630 -2.1004 -1.2430 36 1 9.0479 -3.8988 -5.9300 37 1 2.2491 -1.6317 1.1527 38 1 3.4612 -3.7116 4.5904 39 1 3.8929 -2.4487 6.6599 40 1 2.9121 1.8789 5.5714 41 1 2.2715 1.8208 4.0193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285632128.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:55 Heat of formation + Delta-G solvation = -20.818381 kcal Electronic energy + Delta-G solvation = -25975.410237 eV Core-core repulsion = 22016.810227 eV Total energy + Delta-G solvation = -3958.600011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.67506 -40.01579 -39.07403 -36.83121 -35.74384 -34.12707 -33.66829 -32.43562 -31.62179 -29.97637 -29.36675 -26.19472 -25.86158 -25.37204 -24.04166 -22.34361 -21.02816 -20.36782 -18.94058 -18.38096 -17.97110 -17.74919 -16.89051 -16.33758 -16.21294 -15.94108 -15.61453 -15.30708 -15.05215 -14.81152 -14.78508 -14.42217 -14.05446 -13.81532 -13.49409 -13.13564 -12.94496 -12.91476 -12.58092 -12.27697 -12.23417 -12.02446 -11.81709 -11.34573 -11.07560 -11.02672 -11.01876 -10.76297 -10.69466 -9.81883 -9.62644 -9.57611 -9.43240 -9.08794 -8.96528 -8.49600 -8.24381 -6.50748 -6.22514 -3.92967 0.11734 0.87605 2.31060 2.56007 2.99204 3.04917 3.07845 3.21134 3.27637 3.32235 3.44845 3.65890 3.72132 3.90500 4.16295 4.19640 4.35124 4.68827 4.78216 4.79199 4.88783 4.92553 5.12769 5.12827 5.31283 5.36559 5.50043 5.61548 5.73200 5.80493 5.86959 5.87812 6.02771 6.13040 6.52047 6.56479 6.79841 6.96929 7.15799 7.56971 7.59216 7.63345 7.79960 8.34852 8.56185 9.23077 10.84981 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.002510 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.155468 B =11153.938894 C =12821.380200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.129 3.871 3 H 0.099 0.901 4 C 0.113 3.887 5 N -0.740 5.740 6 C 0.533 3.467 7 O -0.516 6.516 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.701 5.701 19 C 0.593 3.407 20 O -0.547 6.547 21 C -0.059 4.059 22 N -0.369 5.369 23 C -0.022 4.022 24 C 0.142 3.858 25 N -0.512 5.512 26 C 0.413 3.587 27 N -0.816 5.816 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.416 0.584 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.402 0.598 41 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.872 6.599 22.764 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 H 0.117 0.883 4 C -0.012 4.012 5 N -0.395 5.395 6 C 0.319 3.681 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.206 1.206 18 N -0.352 5.352 19 C 0.379 3.621 20 O -0.425 6.425 21 C -0.207 4.207 22 N -0.085 5.085 23 C -0.189 4.189 24 C -0.024 4.024 25 N -0.235 5.235 26 C 0.169 3.831 27 N -0.367 5.367 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.232 0.768 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.253 0.747 38 H 0.192 0.808 39 H 0.193 0.807 40 H 0.231 0.769 41 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -16.131 6.707 20.859 27.208 hybrid contribution 2.255 0.463 1.876 2.969 sum -13.876 7.169 22.735 27.583 Atomic orbital electron populations 1.22112 0.93709 1.02939 1.03178 1.21370 0.95213 0.97895 0.83067 0.88316 1.21617 0.81244 1.01473 0.96843 1.45989 1.06732 1.62131 1.24651 1.20307 0.89522 0.76682 0.81570 1.90709 1.69851 1.45936 1.32463 1.23532 0.93507 1.05686 1.07717 1.85384 1.04641 1.73078 1.20170 1.22906 0.91512 1.44222 1.09658 0.90904 1.24991 0.99602 0.94554 0.94450 1.70022 1.35321 1.35570 1.09376 0.86115 0.82980 0.77995 0.78399 1.19631 1.20543 1.20567 1.45874 1.65549 1.15080 1.08716 1.17492 0.76661 0.85534 0.82385 1.90412 1.52672 1.15585 1.83815 1.21131 1.13269 0.91626 0.94677 1.68061 1.04187 1.07190 1.29093 1.23441 1.03659 1.02131 0.89621 1.23875 0.90328 0.89094 0.99067 1.68220 1.17910 1.10620 1.26770 1.19129 0.87814 0.87313 0.88801 1.43310 1.66174 1.03612 1.23639 0.91824 0.91580 0.90805 0.90724 0.89723 0.76778 0.89268 0.89231 0.92226 0.74745 0.80767 0.80671 0.76920 0.72649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.48 37.16 0.35 -0.83 16 2 C 0.13 1.10 2.73 -67.93 -0.19 0.92 16 3 H 0.10 0.90 7.58 -51.93 -0.39 0.51 16 4 C 0.11 1.19 5.23 -4.05 -0.02 1.16 16 5 N -0.74 -9.51 5.39 -60.30 -0.32 -9.83 16 6 C 0.53 9.71 7.85 -10.99 -0.09 9.62 16 7 O -0.52 -11.39 15.86 5.56 0.09 -11.30 16 8 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 10 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 11 H 0.07 1.97 7.80 -52.48 -0.41 1.57 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 14 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 N -0.70 -6.29 4.51 -54.79 -0.25 -6.53 16 19 C 0.59 6.11 7.75 -12.39 -0.10 6.02 16 20 O -0.55 -6.18 13.31 5.30 0.07 -6.11 16 21 C -0.06 -0.60 6.77 -82.65 -0.56 -1.16 16 22 N -0.37 -3.49 9.71 -9.49 -0.09 -3.59 16 23 C -0.02 -0.16 11.21 -17.39 -0.19 -0.35 16 24 C 0.14 0.93 11.22 -17.25 -0.19 0.73 16 25 N -0.51 -4.65 10.52 -11.99 -0.13 -4.77 16 26 C 0.41 4.07 7.77 -154.87 -1.20 2.87 16 27 N -0.82 -6.72 8.93 31.32 0.28 -6.44 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.40 4.42 8.14 -40.82 -0.33 4.09 16 34 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 35 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.42 3.71 7.96 -40.82 -0.33 3.39 16 38 H 0.18 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.40 2.50 8.95 -40.82 -0.37 2.13 16 41 H 0.43 3.79 5.32 -40.96 -0.22 3.58 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -36.09 371.25 -8.01 -44.10 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.98 Total: 8.53 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.77 Total: 3.17 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.22 Total: -56.54 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.16 Total: -17.42 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.09 -8.01 -44.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285632128.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.279 kcal (2) G-P(sol) polarization free energy of solvation -36.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds