Wall clock time and date at job start Sat Apr 11 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46447 * 2 1 4 4 C 1.52993 * 109.47260 * 240.00095 * 2 1 3 5 5 N 1.46500 * 109.47195 * 185.00091 * 4 2 1 6 6 C 1.34775 * 120.00156 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99866 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99949 * 180.02562 * 6 5 4 9 9 S 1.81004 * 109.47115 * 179.97438 * 8 6 5 10 10 C 1.76204 * 100.00105 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99754 * 359.97438 * 10 9 8 12 12 C 1.38797 * 119.99708 * 180.02562 * 10 9 8 13 13 N 1.31626 * 120.00466 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99608 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47168 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47485 * 119.99960 * 14 12 10 17 17 H 1.48503 * 109.46938 * 240.00114 * 14 12 10 18 18 N 1.46500 * 109.46935 * 119.99447 * 2 1 3 19 19 C 1.34768 * 120.00445 * 275.00209 * 18 2 1 20 20 O 1.21572 * 120.00207 * 0.02562 * 19 18 2 21 21 C 1.47730 * 120.00197 * 179.97438 * 19 18 2 22 22 N 1.33018 * 120.16046 * 354.44825 * 21 19 18 23 23 C 1.31734 * 120.00914 * 179.97438 * 22 21 19 24 24 C 1.38800 * 120.34318 * 0.02562 * 23 22 21 25 25 N 1.32040 * 120.32708 * 359.97421 * 24 23 22 26 26 C 1.32831 * 119.98004 * 0.02562 * 25 24 23 27 27 N 1.38268 * 120.16542 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.46690 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46988 * 300.00141 * 1 2 3 30 30 H 1.09003 * 109.46978 * 59.99957 * 1 2 3 31 31 H 1.09001 * 109.47075 * 305.00098 * 4 2 1 32 32 H 1.08996 * 109.47397 * 64.99624 * 4 2 1 33 33 H 0.96995 * 119.99935 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.47009 * 299.99266 * 8 6 5 35 35 H 1.09000 * 109.47498 * 59.99923 * 8 6 5 36 36 H 0.96998 * 120.00665 * 180.02562 * 13 12 10 37 37 H 0.97004 * 119.99359 * 95.00184 * 18 2 1 38 38 H 1.07994 * 119.82972 * 180.02562 * 23 22 21 39 39 H 1.07997 * 119.83838 * 179.97438 * 24 23 22 40 40 H 0.97003 * 120.00209 * 5.38856 * 27 26 25 41 41 H 0.96999 * 120.00042 * 185.38273 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.1732 -1.4282 -2.1911 7 8 3.5701 -1.8832 -3.1399 8 6 5.6750 -1.5368 -2.1304 9 16 6.2785 -2.3899 -3.6083 10 6 8.0103 -2.3770 -3.2835 11 1 8.3865 -1.9238 -2.3782 12 6 8.8909 -2.9483 -4.1915 13 7 8.4325 -3.4992 -5.2956 14 14 10.7268 -2.9352 -3.8468 15 1 10.9819 -2.2601 -2.5489 16 1 11.2291 -4.3313 -3.7862 17 1 11.4289 -2.2031 -4.9314 18 7 2.0184 -0.6905 1.1962 19 6 2.1470 -0.0182 2.3571 20 8 1.8575 1.1613 2.4119 21 6 2.6389 -0.7147 3.5635 22 7 2.8507 -2.0276 3.5375 23 6 3.2898 -2.6456 4.6149 24 6 3.5334 -1.9338 5.7813 25 7 3.3277 -0.6301 5.8221 26 6 2.8851 0.0060 4.7433 27 7 2.6679 1.3710 4.7818 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6055 -1.7197 -1.2951 32 1 1.7517 -0.1583 -2.1369 33 1 3.9825 -0.4621 -0.4319 34 1 6.1099 -0.5384 -2.0838 35 1 5.9630 -2.1004 -1.2430 36 1 9.0479 -3.8988 -5.9300 37 1 2.2491 -1.6317 1.1527 38 1 3.4612 -3.7116 4.5904 39 1 3.8929 -2.4487 6.6599 40 1 2.9121 1.8789 5.5714 41 1 2.2715 1.8208 4.0193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285632128.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:54 Heat of formation + Delta-G solvation = -50.361465 kcal Electronic energy + Delta-G solvation = -25976.691322 eV Core-core repulsion = 22016.810227 eV Total energy + Delta-G solvation = -3959.881095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.30785 -40.93592 -40.26772 -37.71008 -36.43796 -34.84755 -34.70106 -34.58109 -32.45931 -30.94498 -30.43967 -27.74653 -26.92338 -26.53601 -24.66328 -23.08301 -21.81808 -21.71618 -19.91883 -19.55716 -18.95198 -18.55326 -17.79916 -17.65186 -17.29355 -16.88334 -16.68210 -16.57620 -16.20103 -15.95555 -15.81057 -15.44854 -15.12942 -14.83495 -14.54663 -14.38900 -14.21027 -13.86880 -13.67841 -13.26220 -13.16359 -12.98654 -12.91241 -12.86304 -12.65743 -12.59580 -12.10010 -11.71208 -11.63396 -11.43726 -11.16041 -11.00620 -10.34137 -10.28094 -10.21192 -10.15168 -9.10733 -8.66423 -8.35124 -6.12795 -0.49466 0.27324 1.26266 1.41155 1.46289 1.57452 1.58783 1.61166 1.86750 2.23967 2.28129 2.44930 2.82757 2.99113 3.08270 3.31257 3.35909 3.52009 3.58482 3.93839 4.04322 4.12105 4.20447 4.25118 4.28497 4.48104 4.49556 4.56750 4.69258 4.75635 4.93360 5.21519 5.30864 5.31476 5.38418 5.41904 5.95190 6.19476 6.19762 6.29925 6.40548 6.51891 6.93429 7.06490 7.09811 7.18641 8.74305 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.002510 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.155468 B =11153.938894 C =12821.380200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 H 0.097 0.903 4 C 0.115 3.885 5 N -0.714 5.714 6 C 0.537 3.463 7 O -0.559 6.559 8 C -0.132 4.132 9 S -0.145 6.145 10 C -0.546 4.546 11 H 0.081 0.919 12 C 0.014 3.986 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.258 1.258 16 H -0.273 1.273 17 H -0.274 1.274 18 N -0.697 5.697 19 C 0.590 3.410 20 O -0.563 6.563 21 C -0.086 4.086 22 N -0.386 5.386 23 C -0.022 4.022 24 C 0.150 3.850 25 N -0.528 5.528 26 C 0.398 3.602 27 N -0.813 5.813 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.410 0.590 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.271 0.729 37 H 0.416 0.584 38 H 0.206 0.794 39 H 0.217 0.783 40 H 0.409 0.591 41 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.179 6.640 25.149 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 H 0.115 0.885 4 C -0.009 4.009 5 N -0.368 5.368 6 C 0.323 3.677 7 O -0.437 6.437 8 C -0.283 4.283 9 S 0.082 5.918 10 C -0.694 4.694 11 H 0.099 0.901 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.820 3.180 15 H -0.182 1.182 16 H -0.198 1.198 17 H -0.200 1.200 18 N -0.347 5.347 19 C 0.378 3.622 20 O -0.442 6.442 21 C -0.232 4.232 22 N -0.102 5.102 23 C -0.189 4.189 24 C -0.016 4.016 25 N -0.252 5.252 26 C 0.155 3.845 27 N -0.364 5.364 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.246 0.754 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.254 0.746 38 H 0.222 0.778 39 H 0.233 0.767 40 H 0.239 0.761 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -15.466 6.801 23.286 28.769 hybrid contribution 1.959 0.424 1.292 2.385 sum -13.507 7.225 24.578 28.961 Atomic orbital electron populations 1.22071 0.92480 1.03370 1.03482 1.21277 0.95979 0.97257 0.81959 0.88526 1.21763 0.79254 1.01929 0.97993 1.45727 1.07833 1.59965 1.23293 1.19964 0.88748 0.76959 0.82037 1.90701 1.70290 1.48283 1.34445 1.23379 0.94981 1.05633 1.04324 1.85524 1.05719 1.74982 1.25586 1.23227 0.91783 1.44354 1.10063 0.90118 1.26108 1.05154 0.93811 0.94014 1.70177 1.37338 1.36587 1.10592 0.84914 0.75968 0.78348 0.78768 1.18191 1.19792 1.19954 1.45829 1.65401 1.15004 1.08513 1.17614 0.76481 0.85403 0.82747 1.90399 1.53477 1.16207 1.84151 1.21068 1.15209 0.92178 0.94788 1.68052 1.04859 1.06964 1.30347 1.24065 1.02237 1.03518 0.89126 1.24593 0.88399 0.88308 1.00255 1.68303 1.18396 1.11893 1.26559 1.19310 0.88247 0.87786 0.89144 1.43267 1.65940 1.03410 1.23816 0.91349 0.92209 0.89531 0.90595 0.89530 0.75369 0.87613 0.87422 0.91952 0.74646 0.77777 0.76680 0.76054 0.73036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.48 71.98 0.68 -1.40 16 2 C 0.14 2.21 2.73 44.99 0.12 2.33 16 3 H 0.10 1.64 7.58 -2.38 -0.02 1.62 16 4 C 0.11 2.26 5.23 86.38 0.45 2.71 16 5 N -0.71 -17.35 5.39 -463.08 -2.49 -19.84 16 6 C 0.54 19.24 7.85 87.66 0.69 19.93 16 7 O -0.56 -24.96 15.86 -3.04 -0.05 -25.01 16 8 C -0.13 -5.21 6.16 71.23 0.44 -4.77 16 9 S -0.15 -8.01 20.57 -56.49 -1.16 -9.18 16 10 C -0.55 -31.18 9.50 67.95 0.65 -30.53 16 11 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 12 C 0.01 0.79 5.49 84.86 0.47 1.26 16 13 N -0.91 -55.71 13.22 21.65 0.29 -55.42 16 14 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 15 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 18 N -0.70 -11.79 4.51 -445.52 -2.01 -13.79 16 19 C 0.59 11.84 7.75 86.75 0.67 12.51 16 20 O -0.56 -12.56 13.31 -3.94 -0.05 -12.61 16 21 C -0.09 -1.70 6.77 42.01 0.28 -1.42 16 22 N -0.39 -6.76 9.71 -183.94 -1.79 -8.55 16 23 C -0.02 -0.26 11.21 84.84 0.95 0.69 16 24 C 0.15 1.56 11.22 84.80 0.95 2.51 16 25 N -0.53 -8.73 10.52 -191.86 -2.02 -10.75 16 26 C 0.40 7.56 7.77 133.50 1.04 8.60 16 27 N -0.81 -13.17 8.93 -54.83 -0.49 -13.66 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.41 8.32 8.14 -92.71 -0.75 7.56 16 34 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 35 H 0.11 3.85 8.14 -2.40 -0.02 3.84 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.42 6.97 7.96 -92.71 -0.74 6.23 16 38 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.22 0.28 8.06 -2.91 -0.02 0.26 16 40 H 0.41 4.95 8.95 -92.71 -0.83 4.12 16 41 H 0.43 7.53 5.32 -94.93 -0.51 7.03 16 Total: -1.00 -80.12 371.25 -2.06 -82.18 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -1.70 Total: 28.65 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 7.39 Total: 12.43 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -8.51 Total: -122.02 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.10 Total: -37.62 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.18 kcal Total: -80.12 -2.06 -82.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285632128.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.817 kcal (2) G-P(sol) polarization free energy of solvation -80.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds