Wall clock time and date at job start Sat Apr 11 2020 05:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46737 * 2 1 4 4 N 1.28707 * 126.04361 * 274.86373 * 3 2 1 5 5 N 1.28508 * 110.64746 * 180.02562 * 4 3 2 6 6 C 1.33328 * 109.43279 * 359.76563 * 5 4 3 7 7 C 1.37002 * 106.37153 * 0.36864 * 6 5 4 8 8 C 1.47234 * 127.18618 * 179.90727 * 7 6 5 9 9 O 1.21622 * 120.00083 * 184.85614 * 8 7 6 10 10 N 1.34772 * 120.00256 * 4.86114 * 8 7 6 11 11 C 1.47583 * 134.49424 * 174.68154 * 10 8 7 12 12 C 1.53952 * 86.11676 * 155.35396 * 11 10 8 13 13 N 1.46503 * 113.74232 * 269.15499 * 12 11 10 14 14 C 1.34772 * 119.99718 * 203.07607 * 13 12 11 15 15 O 1.21283 * 120.00383 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99801 * 180.02562 * 14 13 12 17 17 S 1.81004 * 109.47130 * 179.97438 * 16 14 13 18 18 C 1.76197 * 99.99857 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00346 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00176 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99492 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00255 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47175 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46746 * 120.00063 * 22 20 18 25 25 H 1.48503 * 109.46914 * 239.99954 * 22 20 18 26 26 C 1.47812 * 134.45591 * 354.54300 * 10 8 7 27 27 H 1.08999 * 109.47691 * 55.00153 * 1 2 3 28 28 H 1.09007 * 109.46903 * 175.00014 * 1 2 3 29 29 H 1.09000 * 109.46973 * 294.99136 * 1 2 3 30 30 H 1.09005 * 109.46502 * 240.00758 * 2 1 3 31 31 H 1.08996 * 109.47610 * 120.00445 * 2 1 3 32 32 H 1.08005 * 126.81182 * 180.26023 * 6 5 4 33 33 H 1.09001 * 113.76841 * 41.05437 * 11 10 8 34 34 H 1.08997 * 113.76803 * 269.65283 * 11 10 8 35 35 H 1.09002 * 113.74056 * 137.95194 * 12 11 10 36 36 H 0.96997 * 119.99676 * 23.07442 * 13 12 11 37 37 H 1.09004 * 109.46980 * 299.99853 * 16 14 13 38 38 H 1.08995 * 109.47300 * 59.99635 * 16 14 13 39 39 H 0.97000 * 119.99876 * 180.02562 * 21 20 18 40 40 H 1.08995 * 113.77188 * 90.38153 * 26 10 8 41 41 H 1.09007 * 113.83643 * 318.92191 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.1874 2.1246 -1.0369 5 7 2.6281 3.2830 -0.6970 6 6 2.7612 3.3355 0.6285 7 6 2.3760 2.1097 1.1042 8 6 2.3466 1.6694 2.5088 9 8 2.0639 0.5178 2.7793 10 7 2.6328 2.5424 3.4949 11 6 2.6054 2.4828 4.9693 12 6 3.6560 3.6074 4.9299 13 7 5.0385 3.1229 4.9157 14 6 6.0370 3.9220 5.3411 15 8 5.7911 5.0423 5.7352 16 6 7.4591 3.4238 5.3260 17 16 8.5587 4.7186 5.9511 18 6 10.1086 3.8899 5.8272 19 1 10.1519 2.8791 5.4492 20 6 11.2743 4.5365 6.2143 21 7 11.2216 5.7686 6.6744 22 14 12.9176 3.6581 6.0822 23 1 12.7067 2.2924 5.5387 24 1 13.8138 4.4187 5.1746 25 1 13.5388 3.5654 7.4279 26 6 3.1026 3.9433 3.5331 27 1 -0.3634 0.5894 -0.8418 28 1 -0.3633 -1.0238 -0.0896 29 1 -0.3633 0.4342 0.9314 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.1061 4.1767 1.2115 33 1 2.9811 1.5448 5.3781 34 1 1.6529 2.7864 5.4036 35 1 3.4879 4.3911 5.6686 36 1 5.2352 2.2270 4.6002 37 1 7.5413 2.5401 5.9589 38 1 7.7435 3.1675 4.3055 39 1 12.0362 6.2207 6.9446 40 1 2.2966 4.6769 3.5447 41 1 3.8746 4.1693 2.7974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297003309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:52 Heat of formation + Delta-G solvation = 72.825950 kcal Electronic energy + Delta-G solvation = -26156.861515 eV Core-core repulsion = 22202.322227 eV Total energy + Delta-G solvation = -3954.539288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.68152 -40.96246 -39.15447 -37.96216 -35.81873 -33.73704 -32.47064 -32.14789 -31.23872 -30.03784 -28.49399 -26.87322 -25.54527 -25.15863 -24.09804 -22.61050 -21.63687 -20.68429 -19.76594 -18.07469 -17.86412 -17.52236 -17.11603 -16.71648 -16.34985 -16.09685 -15.57022 -15.31944 -15.05942 -14.84105 -14.48564 -14.20465 -13.97727 -13.63061 -13.45199 -13.34183 -13.26164 -12.82520 -12.59334 -12.49399 -12.28372 -12.17019 -11.94346 -11.57765 -11.33342 -11.09994 -11.06778 -10.80074 -10.63281 -10.46909 -9.91181 -9.86171 -9.65842 -9.32542 -9.16740 -9.10066 -8.30613 -6.55841 -6.26369 -3.97347 0.52039 1.56647 1.94232 2.28910 2.61663 2.82490 2.84603 3.19108 3.23850 3.28761 3.52068 3.59151 3.95253 4.02184 4.15941 4.26539 4.33792 4.39797 4.47948 4.69037 4.81031 4.83821 4.90378 4.96714 5.02684 5.03563 5.09344 5.11665 5.21757 5.37164 5.41442 5.48400 5.58660 5.66783 5.79171 6.00454 6.05848 6.37531 6.98508 7.43771 7.47174 7.56141 7.98482 8.31091 8.39791 9.19555 10.81067 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017009 B = 0.002205 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.813875 B =12693.539384 C =13286.944564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.100 3.900 3 N -0.253 5.253 4 N -0.057 5.057 5 N -0.272 5.272 6 C 0.002 3.998 7 C -0.069 4.069 8 C 0.620 3.380 9 O -0.537 6.537 10 N -0.631 5.631 11 C 0.108 3.892 12 C 0.118 3.882 13 N -0.722 5.722 14 C 0.538 3.462 15 O -0.510 6.510 16 C -0.155 4.155 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.280 1.280 26 C 0.076 3.924 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.200 0.800 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.402 0.598 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.268 0.732 40 H 0.107 0.893 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.049 -10.421 -8.861 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.020 4.020 3 N -0.050 5.050 4 N -0.037 5.037 5 N -0.135 5.135 6 C -0.159 4.159 7 C -0.203 4.203 8 C 0.408 3.592 9 O -0.414 6.414 10 N -0.367 5.367 11 C -0.014 4.014 12 C 0.010 3.990 13 N -0.376 5.376 14 C 0.324 3.676 15 O -0.384 6.384 16 C -0.305 4.305 17 S 0.169 5.831 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.048 4.048 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.126 0.874 31 H 0.143 0.857 32 H 0.216 0.784 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.146 0.854 36 H 0.237 0.763 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.653 -9.107 -9.682 27.132 hybrid contribution 1.454 -2.414 0.276 2.832 sum -22.199 -11.521 -9.406 26.720 Atomic orbital electron populations 1.22099 0.92609 1.04140 1.03393 1.22487 0.96811 0.75667 1.07035 1.47918 1.39962 1.13589 1.03541 1.78271 1.15629 0.98182 1.11659 1.74958 1.15115 1.10848 1.12540 1.24207 1.02347 0.97239 0.92079 1.21814 1.13177 0.94480 0.90830 1.16224 0.76640 0.84413 0.81943 1.90795 1.49750 1.17396 1.83461 1.49775 1.66154 1.14016 1.06747 1.23690 0.99337 1.00249 0.78161 1.22290 0.82297 0.97287 0.97147 1.45726 1.05022 1.18601 1.68212 1.20385 0.86497 0.85032 0.75646 1.90717 1.83952 1.19038 1.44658 1.23542 0.94763 1.06597 1.05627 1.85380 0.98513 1.16080 1.83140 1.22897 0.92327 1.02862 1.50315 0.90857 1.24997 0.99135 0.94981 0.94469 1.70021 1.28907 1.11067 1.40220 0.86112 0.81957 0.79395 0.78013 1.19628 1.20532 1.20534 1.24226 0.98950 0.82710 0.98901 0.91410 0.89382 0.91578 0.87417 0.85656 0.78384 0.88793 0.87594 0.85441 0.76336 0.89038 0.89101 0.92185 0.87515 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 10.24 37.16 0.38 -0.56 16 2 C 0.10 0.71 6.79 -4.04 -0.03 0.68 16 3 N -0.25 -2.58 3.39 -57.37 -0.19 -2.78 16 4 N -0.06 -0.69 13.14 60.35 0.79 0.11 16 5 N -0.27 -3.42 12.35 30.48 0.38 -3.05 16 6 C 0.00 0.02 11.16 -17.35 -0.19 -0.18 16 7 C -0.07 -0.71 6.98 -82.33 -0.57 -1.29 16 8 C 0.62 6.26 8.03 -12.61 -0.10 6.16 16 9 O -0.54 -6.48 15.47 5.26 0.08 -6.40 16 10 N -0.63 -4.94 3.61 -179.65 -0.65 -5.59 16 11 C 0.11 0.67 8.59 -2.96 -0.03 0.65 16 12 C 0.12 0.93 4.40 -70.13 -0.31 0.62 16 13 N -0.72 -7.75 5.37 -55.33 -0.30 -8.05 16 14 C 0.54 8.66 7.85 -10.99 -0.09 8.57 16 15 O -0.51 -10.05 15.48 5.56 0.09 -9.96 16 16 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 17 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 18 C -0.54 -14.85 9.50 30.94 0.29 -14.55 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -25.58 13.22 55.49 0.73 -24.85 16 22 Si 0.92 21.07 29.55 -169.99 -5.02 16.04 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.08 0.50 6.94 -2.84 -0.02 0.48 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.13 0.96 6.11 -51.93 -0.32 0.64 16 32 H 0.20 1.47 5.30 -52.48 -0.28 1.19 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.13 1.07 7.51 -51.93 -0.39 0.68 16 36 H 0.40 3.71 8.74 -40.82 -0.36 3.35 16 37 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 38 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.67 6.49 -51.92 -0.34 0.34 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -36.61 369.14 -6.31 -42.92 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.03 Total: -0.15 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -0.54 Total: -0.11 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.76 Total: -44.19 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.17 Total: -16.37 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.61 -6.31 -42.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297003309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.746 kcal (2) G-P(sol) polarization free energy of solvation -36.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds