Wall clock time and date at job start Sat Apr 11 2020 05:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46737 * 2 1 4 4 N 1.28707 * 126.04361 * 274.86373 * 3 2 1 5 5 N 1.28508 * 110.64746 * 180.02562 * 4 3 2 6 6 C 1.33328 * 109.43279 * 359.76563 * 5 4 3 7 7 C 1.37002 * 106.37153 * 0.36864 * 6 5 4 8 8 C 1.47234 * 127.18618 * 179.90727 * 7 6 5 9 9 O 1.21622 * 120.00083 * 184.85614 * 8 7 6 10 10 N 1.34772 * 120.00256 * 4.86114 * 8 7 6 11 11 C 1.47583 * 134.49424 * 174.68154 * 10 8 7 12 12 C 1.53952 * 86.11676 * 155.35396 * 11 10 8 13 13 N 1.46503 * 113.74232 * 269.15499 * 12 11 10 14 14 C 1.34772 * 119.99718 * 203.07607 * 13 12 11 15 15 O 1.21283 * 120.00383 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99801 * 180.02562 * 14 13 12 17 17 S 1.81004 * 109.47130 * 179.97438 * 16 14 13 18 18 C 1.76197 * 99.99857 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00346 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00176 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99492 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00255 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47175 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46746 * 120.00063 * 22 20 18 25 25 H 1.48503 * 109.46914 * 239.99954 * 22 20 18 26 26 C 1.47812 * 134.45591 * 354.54300 * 10 8 7 27 27 H 1.08999 * 109.47691 * 55.00153 * 1 2 3 28 28 H 1.09007 * 109.46903 * 175.00014 * 1 2 3 29 29 H 1.09000 * 109.46973 * 294.99136 * 1 2 3 30 30 H 1.09005 * 109.46502 * 240.00758 * 2 1 3 31 31 H 1.08996 * 109.47610 * 120.00445 * 2 1 3 32 32 H 1.08005 * 126.81182 * 180.26023 * 6 5 4 33 33 H 1.09001 * 113.76841 * 41.05437 * 11 10 8 34 34 H 1.08997 * 113.76803 * 269.65283 * 11 10 8 35 35 H 1.09002 * 113.74056 * 137.95194 * 12 11 10 36 36 H 0.96997 * 119.99676 * 23.07442 * 13 12 11 37 37 H 1.09004 * 109.46980 * 299.99853 * 16 14 13 38 38 H 1.08995 * 109.47300 * 59.99635 * 16 14 13 39 39 H 0.97000 * 119.99876 * 180.02562 * 21 20 18 40 40 H 1.08995 * 113.77188 * 90.38153 * 26 10 8 41 41 H 1.09007 * 113.83643 * 318.92191 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.1874 2.1246 -1.0369 5 7 2.6281 3.2830 -0.6970 6 6 2.7612 3.3355 0.6285 7 6 2.3760 2.1097 1.1042 8 6 2.3466 1.6694 2.5088 9 8 2.0639 0.5178 2.7793 10 7 2.6328 2.5424 3.4949 11 6 2.6054 2.4828 4.9693 12 6 3.6560 3.6074 4.9299 13 7 5.0385 3.1229 4.9157 14 6 6.0370 3.9220 5.3411 15 8 5.7911 5.0423 5.7352 16 6 7.4591 3.4238 5.3260 17 16 8.5587 4.7186 5.9511 18 6 10.1086 3.8899 5.8272 19 1 10.1519 2.8791 5.4492 20 6 11.2743 4.5365 6.2143 21 7 11.2216 5.7686 6.6744 22 14 12.9176 3.6581 6.0822 23 1 12.7067 2.2924 5.5387 24 1 13.8138 4.4187 5.1746 25 1 13.5388 3.5654 7.4279 26 6 3.1026 3.9433 3.5331 27 1 -0.3634 0.5894 -0.8418 28 1 -0.3633 -1.0238 -0.0896 29 1 -0.3633 0.4342 0.9314 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.1061 4.1767 1.2115 33 1 2.9811 1.5448 5.3781 34 1 1.6529 2.7864 5.4036 35 1 3.4879 4.3911 5.6686 36 1 5.2352 2.2270 4.6002 37 1 7.5413 2.5401 5.9589 38 1 7.7435 3.1675 4.3055 39 1 12.0362 6.2207 6.9446 40 1 2.2966 4.6769 3.5447 41 1 3.8746 4.1693 2.7974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297003309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:51 Heat of formation + Delta-G solvation = 44.526431 kcal Electronic energy + Delta-G solvation = -26158.088674 eV Core-core repulsion = 22202.322227 eV Total energy + Delta-G solvation = -3955.766447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.46923 -41.71927 -40.24010 -38.85051 -36.49688 -34.79049 -34.56740 -32.97354 -31.87527 -31.17413 -29.52755 -27.65021 -27.42066 -25.82229 -24.84521 -23.39543 -22.48394 -21.70892 -20.48060 -19.84266 -18.65216 -18.30719 -18.02657 -17.64575 -17.26328 -17.01805 -16.87044 -16.50014 -16.34729 -15.98804 -15.70129 -15.08371 -14.82802 -14.66706 -14.61854 -14.21365 -14.02259 -13.97318 -13.43261 -13.37091 -13.23714 -13.14829 -12.92166 -12.88171 -12.64988 -12.59678 -12.25709 -12.05147 -11.71032 -11.38912 -11.23260 -11.15135 -11.00414 -10.70971 -10.26257 -10.20640 -9.91072 -8.63701 -8.34486 -6.10873 -0.24449 0.89617 1.12480 1.27436 1.41113 1.47051 1.57789 1.58074 1.65721 1.87540 2.19804 2.28423 2.88010 2.99932 3.26731 3.31407 3.38208 3.60392 3.73880 3.76965 3.83662 3.95330 4.19020 4.23048 4.25690 4.31795 4.39091 4.54110 4.55265 4.59101 4.62359 4.66511 4.76174 4.83736 4.89616 5.03668 5.29849 5.43299 5.47234 6.20660 6.29728 6.43771 6.71803 7.07801 7.17229 7.20693 8.74625 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017009 B = 0.002205 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.813875 B =12693.539384 C =13286.944564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.093 3.907 3 N -0.249 5.249 4 N -0.076 5.076 5 N -0.303 5.303 6 C 0.004 3.996 7 C -0.076 4.076 8 C 0.620 3.380 9 O -0.561 6.561 10 N -0.628 5.628 11 C 0.118 3.882 12 C 0.108 3.892 13 N -0.700 5.700 14 C 0.545 3.455 15 O -0.551 6.551 16 C -0.134 4.134 17 S -0.142 6.142 18 C -0.546 4.546 19 H 0.080 0.920 20 C 0.014 3.986 21 N -0.909 5.909 22 Si 0.995 3.005 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.274 1.274 26 C 0.080 3.920 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.222 0.778 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.412 0.588 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.271 0.729 40 H 0.139 0.861 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.931 -12.136 -9.120 28.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.026 4.026 3 N -0.047 5.047 4 N -0.057 5.057 5 N -0.165 5.165 6 C -0.157 4.157 7 C -0.210 4.210 8 C 0.407 3.593 9 O -0.440 6.440 10 N -0.363 5.363 11 C -0.003 4.003 12 C 0.002 3.998 13 N -0.353 5.353 14 C 0.331 3.669 15 O -0.428 6.428 16 C -0.286 4.286 17 S 0.085 5.915 18 C -0.694 4.694 19 H 0.098 0.902 20 C -0.191 4.191 21 N -0.546 5.546 22 Si 0.817 3.183 23 H -0.183 1.183 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.043 4.043 27 H 0.081 0.919 28 H 0.131 0.869 29 H 0.072 0.928 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.238 0.762 33 H 0.112 0.888 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.249 0.751 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.157 0.843 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -24.575 -10.851 -9.961 28.651 hybrid contribution 1.596 -1.944 0.361 2.541 sum -22.979 -12.795 -9.599 27.998 Atomic orbital electron populations 1.22068 0.91453 1.05510 1.02433 1.22763 0.97736 0.74431 1.07702 1.48226 1.39020 1.14252 1.03236 1.78214 1.16554 0.98492 1.12401 1.74917 1.16244 1.11439 1.13876 1.24595 1.01739 0.97903 0.91463 1.22020 1.13227 0.94618 0.91150 1.16187 0.76701 0.84337 0.82034 1.90784 1.51173 1.18359 1.83719 1.49843 1.65075 1.14244 1.07124 1.23840 0.99903 0.99482 0.77124 1.22507 0.80655 0.98322 0.98366 1.45444 1.05379 1.18220 1.66209 1.19876 0.86383 0.84803 0.75840 1.90711 1.84317 1.20784 1.46985 1.23396 0.94902 1.04128 1.06139 1.85475 1.00728 1.20915 1.84367 1.23230 0.93007 1.03119 1.50074 0.90183 1.26071 1.03365 0.95718 0.93905 1.70172 1.30078 1.12866 1.41436 0.84956 0.76615 0.78499 0.78205 1.18288 1.20025 1.19904 1.24382 0.99779 0.82681 0.97436 0.91884 0.86903 0.92819 0.85599 0.86081 0.76219 0.88752 0.84515 0.85376 0.75114 0.87391 0.87644 0.91996 0.84339 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.24 71.98 0.74 -0.85 16 2 C 0.09 1.21 6.79 86.38 0.59 1.80 16 3 N -0.25 -4.89 3.39 -335.43 -1.14 -6.03 16 4 N -0.08 -1.81 13.14 37.02 0.49 -1.32 16 5 N -0.30 -7.47 12.35 -57.50 -0.71 -8.18 16 6 C 0.00 0.07 11.16 84.18 0.94 1.01 16 7 C -0.08 -1.46 6.98 40.41 0.28 -1.18 16 8 C 0.62 11.36 8.03 86.61 0.70 12.05 16 9 O -0.56 -12.69 15.47 -4.10 -0.06 -12.75 16 10 N -0.63 -8.08 3.61 -840.54 -3.04 -11.11 16 11 C 0.12 1.08 8.59 86.49 0.74 1.82 16 12 C 0.11 1.42 4.40 46.75 0.21 1.63 16 13 N -0.70 -13.48 5.37 -447.35 -2.40 -15.89 16 14 C 0.54 16.95 7.85 87.66 0.69 17.64 16 15 O -0.55 -21.62 15.48 -3.04 -0.05 -21.67 16 16 C -0.13 -4.89 6.16 71.24 0.44 -4.45 16 17 S -0.14 -7.50 20.57 -56.49 -1.16 -8.66 16 18 C -0.55 -30.43 9.50 67.96 0.65 -29.78 16 19 H 0.08 4.18 7.80 -2.91 -0.02 4.15 16 20 C 0.01 0.80 5.49 84.86 0.47 1.27 16 21 N -0.91 -54.66 13.22 21.65 0.29 -54.38 16 22 Si 1.00 43.03 29.55 68.60 2.03 45.06 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 C 0.08 0.81 6.94 86.44 0.60 1.41 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.12 1.74 6.11 -2.39 -0.01 1.73 16 32 H 0.22 2.83 5.30 -2.91 -0.02 2.81 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.13 1.84 7.51 -2.39 -0.02 1.82 16 36 H 0.41 6.51 8.74 -92.71 -0.81 5.70 16 37 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 38 H 0.11 3.52 8.14 -2.40 -0.02 3.50 16 39 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.09 1.06 6.49 -2.38 -0.02 1.04 16 Total: -1.00 -81.87 369.14 1.54 -80.32 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.28 Total: 12.24 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 7.03 Total: 2.37 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -6.51 Total: -96.91 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.11 Total: -34.42 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -7.50 SS G_CDS: -1.16 Total: -8.66 kcal Total: -81.87 1.54 -80.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297003309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.848 kcal (2) G-P(sol) polarization free energy of solvation -81.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds