Wall clock time and date at job start Sat Apr 11 2020 05:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34816 * 126.59327 * 2 1 4 4 C 1.36602 * 106.83847 * 179.97438 * 3 2 1 5 5 C 1.47523 * 125.76914 * 180.26109 * 4 3 2 6 6 O 1.21593 * 119.99812 * 359.71778 * 5 4 3 7 7 N 1.34778 * 119.99695 * 179.71894 * 5 4 3 8 8 C 1.46496 * 119.99759 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46891 * 179.97438 * 8 7 5 10 10 C 1.53947 * 113.74524 * 273.73869 * 9 8 7 11 11 N 1.47815 * 86.03592 * 222.08821 * 10 9 8 12 12 C 1.34779 * 134.44945 * 204.64562 * 11 10 9 13 13 O 1.21287 * 119.99570 * 179.86530 * 12 11 10 14 14 C 1.50692 * 120.00297 * 359.86684 * 12 11 10 15 15 S 1.81008 * 109.46979 * 180.02562 * 14 12 11 16 16 C 1.76204 * 99.99869 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99833 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00010 * 179.97438 * 16 15 14 19 19 N 1.31632 * 119.99770 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00116 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47272 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47123 * 119.99998 * 20 18 16 23 23 H 1.48492 * 109.47220 * 240.00072 * 20 18 16 24 24 C 1.47583 * 91.05197 * 24.55049 * 11 10 9 25 25 N 1.34404 * 108.45542 * 359.97438 * 4 3 2 26 26 N 1.28755 * 109.52541 * 0.02562 * 25 4 3 27 27 H 1.09001 * 109.47336 * 269.97805 * 1 2 3 28 28 H 1.08999 * 109.46666 * 29.98249 * 1 2 3 29 29 H 1.08995 * 109.46861 * 149.97623 * 1 2 3 30 30 H 1.07999 * 126.58373 * 0.03979 * 3 2 1 31 31 H 0.96999 * 120.00018 * 359.97438 * 7 5 4 32 32 H 1.08996 * 109.47514 * 299.99896 * 8 7 5 33 33 H 1.09003 * 109.47038 * 59.99991 * 8 7 5 34 34 H 1.08996 * 112.94404 * 45.34042 * 9 8 7 35 35 H 1.09002 * 113.76524 * 336.35116 * 10 9 8 36 36 H 1.08991 * 113.76410 * 107.74670 * 10 9 8 37 37 H 1.08997 * 109.47135 * 299.99862 * 14 12 11 38 38 H 1.08995 * 109.47236 * 60.00062 * 14 12 11 39 39 H 0.97005 * 119.99674 * 180.02562 * 19 18 16 40 40 H 1.09003 * 113.76288 * 221.15144 * 24 11 10 41 41 H 1.08998 * 113.76749 * 89.75783 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6207 0.0006 5 6 4.7704 1.4558 0.0063 6 8 4.6755 2.6680 0.0058 7 7 5.9866 0.8750 0.0120 8 6 7.1943 1.7042 0.0181 9 6 8.4312 0.8037 0.0245 10 6 8.8711 0.3645 1.4329 11 7 10.2510 0.6247 0.9713 12 6 11.4681 0.1720 1.3324 13 8 12.4586 0.5716 0.7577 14 6 11.5982 -0.8305 2.4499 15 16 13.3448 -1.2375 2.6949 16 6 13.2071 -2.3922 4.0187 17 1 12.2355 -2.6409 4.4195 18 6 14.3471 -2.9830 4.5457 19 7 15.5312 -2.6803 4.0569 20 14 14.2012 -4.2066 5.9496 21 1 12.7714 -4.3727 6.3149 22 1 14.7583 -5.5159 5.5250 23 1 14.9576 -3.7044 7.1246 24 6 9.7608 1.5766 -0.0444 25 7 3.5239 -0.7230 0.0015 26 7 2.3009 -1.1257 0.0010 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3632 0.8902 -0.5136 29 1 -0.3633 -0.8897 -0.5142 30 1 1.9561 2.1162 0.0006 31 1 6.0623 -0.0921 0.0127 32 1 7.2074 2.3338 -0.8715 33 1 7.1986 2.3331 0.9084 34 1 8.3631 -0.0168 -0.6898 35 1 8.5392 1.0349 2.2257 36 1 8.6692 -0.6845 1.6489 37 1 11.1923 -0.4058 3.3680 38 1 11.0466 -1.7347 2.1929 39 1 16.3279 -3.0935 4.4250 40 1 10.2682 1.4933 -1.0055 41 1 9.6910 2.6037 0.3137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297195657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:54 Heat of formation + Delta-G solvation = 66.252393 kcal Electronic energy + Delta-G solvation = -25009.572476 eV Core-core repulsion = 21054.748137 eV Total energy + Delta-G solvation = -3954.824339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.68884 -40.41563 -39.47537 -37.56555 -35.29598 -34.84297 -32.41870 -31.68238 -30.88420 -29.13405 -28.28402 -26.33727 -25.95326 -25.36525 -23.62661 -22.73067 -21.21838 -20.76052 -19.04630 -18.59576 -17.67448 -16.85391 -16.78680 -16.67110 -16.49102 -15.77278 -15.48273 -15.21617 -15.10007 -14.79397 -14.56686 -14.23026 -13.91655 -13.84056 -13.65822 -13.33757 -13.03882 -12.81749 -12.63989 -12.47606 -12.15437 -11.90689 -11.77683 -11.54900 -11.07885 -11.05930 -10.99660 -10.93999 -10.74732 -10.53317 -9.84864 -9.79870 -9.43425 -9.33241 -9.06397 -8.58783 -8.22112 -6.49228 -6.20688 -3.91291 0.61591 1.24346 1.49450 2.67977 2.77302 2.89357 3.08361 3.22598 3.25512 3.31772 3.56645 3.71497 3.78849 4.05329 4.21209 4.24163 4.32844 4.43082 4.49224 4.62094 4.62782 4.83248 4.85154 4.99990 5.14558 5.22105 5.28227 5.34167 5.36461 5.45180 5.51434 5.61289 5.76070 5.85563 5.93958 6.03904 6.06262 6.16358 7.03272 7.44975 7.61090 7.77918 7.82866 8.36652 8.56182 9.24711 10.86838 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.001818 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.377759 B =15399.240199 C =16945.113236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.364 5.364 3 C 0.095 3.905 4 C -0.104 4.104 5 C 0.607 3.393 6 O -0.539 6.539 7 N -0.713 5.713 8 C 0.130 3.870 9 C -0.139 4.139 10 C 0.107 3.893 11 N -0.652 5.652 12 C 0.556 3.444 13 O -0.515 6.515 14 C -0.145 4.145 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.120 3.880 25 N -0.203 5.203 26 N -0.063 5.063 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.206 0.794 31 H 0.411 0.589 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.085 0.915 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.739 8.685 -9.623 36.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.148 5.148 3 C -0.063 4.063 4 C -0.243 4.243 5 C 0.391 3.609 6 O -0.415 6.415 7 N -0.364 5.364 8 C 0.006 3.994 9 C -0.158 4.158 10 C -0.016 4.016 11 N -0.391 5.391 12 C 0.346 3.654 13 O -0.389 6.389 14 C -0.296 4.296 15 S 0.165 5.835 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.003 4.003 25 N -0.077 5.077 26 N -0.043 5.043 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.223 0.777 31 H 0.247 0.753 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -31.886 8.512 -10.397 34.602 hybrid contribution -1.518 -0.679 1.670 2.356 sum -33.404 7.833 -8.728 35.402 Atomic orbital electron populations 1.22241 0.72282 1.05954 1.05000 1.50418 1.09302 1.05684 1.49425 1.23405 0.90137 0.95095 0.97620 1.21462 0.94598 0.90469 1.17816 1.16702 0.81742 0.86245 0.76237 1.90830 1.86694 1.13054 1.50925 1.45757 1.04973 1.11309 1.74373 1.21402 0.81628 0.93000 1.03381 1.23481 0.93602 0.99846 0.98910 1.23322 0.80006 1.02475 0.95840 1.50023 1.05414 1.45326 1.38348 1.20044 0.80593 0.81408 0.83403 1.90715 1.35490 1.58482 1.54199 1.23471 1.08143 0.99646 0.98296 1.85404 0.96152 1.55727 1.46189 1.22904 0.95937 1.28819 1.20599 0.90866 1.24996 0.94472 0.96797 0.97336 1.70033 0.97789 1.41721 1.40723 0.86109 0.78337 0.80145 0.80867 1.19607 1.20555 1.20560 1.22987 0.89852 0.93954 0.93540 1.74644 1.13052 1.10175 1.09847 1.82055 0.93402 1.06355 1.22513 0.89010 0.88240 0.87924 0.77718 0.75329 0.90308 0.90376 0.87076 0.89511 0.89637 0.89358 0.89316 0.92234 0.89665 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.03 11.51 59.85 0.69 0.72 16 2 N -0.36 -1.94 4.03 -67.85 -0.27 -2.22 16 3 C 0.09 0.54 11.31 -16.83 -0.19 0.35 16 4 C -0.10 -0.88 6.99 -83.55 -0.58 -1.47 16 5 C 0.61 5.67 7.82 -12.47 -0.10 5.57 16 6 O -0.54 -6.30 16.86 5.28 0.09 -6.22 16 7 N -0.71 -5.46 5.55 -61.36 -0.34 -5.80 16 8 C 0.13 0.92 5.51 -4.04 -0.02 0.89 16 9 C -0.14 -1.06 3.93 -89.69 -0.35 -1.41 16 10 C 0.11 1.03 8.18 -2.84 -0.02 1.00 16 11 N -0.65 -9.23 3.61 -178.14 -0.64 -9.87 16 12 C 0.56 10.98 8.07 -10.99 -0.09 10.89 16 13 O -0.51 -12.28 16.59 5.55 0.09 -12.19 16 14 C -0.15 -3.05 5.91 36.00 0.21 -2.84 16 15 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 16 C -0.53 -15.44 9.50 30.94 0.29 -15.14 16 17 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.41 13.22 55.49 0.73 -25.67 16 20 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.12 1.24 8.41 -2.96 -0.02 1.21 16 25 N -0.20 -1.97 12.04 32.85 0.40 -1.57 16 26 N -0.06 -0.56 13.78 60.35 0.83 0.27 16 27 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 28 H 0.10 -0.21 8.14 -51.93 -0.42 -0.63 16 29 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.21 0.51 8.06 -52.49 -0.42 0.09 16 31 H 0.41 2.79 8.16 -40.82 -0.33 2.45 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 34 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.73 7.92 -51.93 -0.41 0.32 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 38 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -40.17 379.28 -6.26 -46.44 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.35 Total: -3.37 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.28 Total: 1.80 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.70 Total: -44.87 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.18 Total: -18.41 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -40.17 -6.26 -46.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297195657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.692 kcal (2) G-P(sol) polarization free energy of solvation -40.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds