Wall clock time and date at job start Sat Apr 11 2020 05:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34816 * 126.59327 * 2 1 4 4 C 1.36602 * 106.83847 * 179.97438 * 3 2 1 5 5 C 1.47523 * 125.76914 * 180.26109 * 4 3 2 6 6 O 1.21593 * 119.99812 * 359.71778 * 5 4 3 7 7 N 1.34778 * 119.99695 * 179.71894 * 5 4 3 8 8 C 1.46496 * 119.99759 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46891 * 179.97438 * 8 7 5 10 10 C 1.53947 * 113.74524 * 273.73869 * 9 8 7 11 11 N 1.47815 * 86.03592 * 222.08821 * 10 9 8 12 12 C 1.34779 * 134.44945 * 204.64562 * 11 10 9 13 13 O 1.21287 * 119.99570 * 179.86530 * 12 11 10 14 14 C 1.50692 * 120.00297 * 359.86684 * 12 11 10 15 15 S 1.81008 * 109.46979 * 180.02562 * 14 12 11 16 16 C 1.76204 * 99.99869 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99833 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00010 * 179.97438 * 16 15 14 19 19 N 1.31632 * 119.99770 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00116 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47272 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47123 * 119.99998 * 20 18 16 23 23 H 1.48492 * 109.47220 * 240.00072 * 20 18 16 24 24 C 1.47583 * 91.05197 * 24.55049 * 11 10 9 25 25 N 1.34404 * 108.45542 * 359.97438 * 4 3 2 26 26 N 1.28755 * 109.52541 * 0.02562 * 25 4 3 27 27 H 1.09001 * 109.47336 * 269.97805 * 1 2 3 28 28 H 1.08999 * 109.46666 * 29.98249 * 1 2 3 29 29 H 1.08995 * 109.46861 * 149.97623 * 1 2 3 30 30 H 1.07999 * 126.58373 * 0.03979 * 3 2 1 31 31 H 0.96999 * 120.00018 * 359.97438 * 7 5 4 32 32 H 1.08996 * 109.47514 * 299.99896 * 8 7 5 33 33 H 1.09003 * 109.47038 * 59.99991 * 8 7 5 34 34 H 1.08996 * 112.94404 * 45.34042 * 9 8 7 35 35 H 1.09002 * 113.76524 * 336.35116 * 10 9 8 36 36 H 1.08991 * 113.76410 * 107.74670 * 10 9 8 37 37 H 1.08997 * 109.47135 * 299.99862 * 14 12 11 38 38 H 1.08995 * 109.47236 * 60.00062 * 14 12 11 39 39 H 0.97005 * 119.99674 * 180.02562 * 19 18 16 40 40 H 1.09003 * 113.76288 * 221.15144 * 24 11 10 41 41 H 1.08998 * 113.76749 * 89.75783 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6207 0.0006 5 6 4.7704 1.4558 0.0063 6 8 4.6755 2.6680 0.0058 7 7 5.9866 0.8750 0.0120 8 6 7.1943 1.7042 0.0181 9 6 8.4312 0.8037 0.0245 10 6 8.8711 0.3645 1.4329 11 7 10.2510 0.6247 0.9713 12 6 11.4681 0.1720 1.3324 13 8 12.4586 0.5716 0.7577 14 6 11.5982 -0.8305 2.4499 15 16 13.3448 -1.2375 2.6949 16 6 13.2071 -2.3922 4.0187 17 1 12.2355 -2.6409 4.4195 18 6 14.3471 -2.9830 4.5457 19 7 15.5312 -2.6803 4.0569 20 14 14.2012 -4.2066 5.9496 21 1 12.7714 -4.3727 6.3149 22 1 14.7583 -5.5159 5.5250 23 1 14.9576 -3.7044 7.1246 24 6 9.7608 1.5766 -0.0444 25 7 3.5239 -0.7230 0.0015 26 7 2.3009 -1.1257 0.0010 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3632 0.8902 -0.5136 29 1 -0.3633 -0.8897 -0.5142 30 1 1.9561 2.1162 0.0006 31 1 6.0623 -0.0921 0.0127 32 1 7.2074 2.3338 -0.8715 33 1 7.1986 2.3331 0.9084 34 1 8.3631 -0.0168 -0.6898 35 1 8.5392 1.0349 2.2257 36 1 8.6692 -0.6845 1.6489 37 1 11.1923 -0.4058 3.3680 38 1 11.0466 -1.7347 2.1929 39 1 16.3279 -3.0935 4.4250 40 1 10.2682 1.4933 -1.0055 41 1 9.6910 2.6037 0.3137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297195657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:54 Heat of formation + Delta-G solvation = 34.154064 kcal Electronic energy + Delta-G solvation = -25010.964364 eV Core-core repulsion = 21054.748137 eV Total energy + Delta-G solvation = -3956.216227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.18564 -41.40999 -40.29574 -38.90021 -35.84875 -35.42370 -34.60231 -32.46976 -31.91657 -30.23257 -28.70736 -27.72879 -27.18241 -26.70009 -24.26683 -23.15575 -22.00468 -21.45428 -20.36455 -19.52422 -19.12195 -18.00047 -17.47628 -17.26753 -17.12620 -16.91659 -16.83196 -16.55687 -16.21515 -15.72037 -15.61062 -15.52378 -14.77147 -14.64068 -14.45869 -14.07246 -13.95690 -13.92147 -13.65404 -13.44469 -13.21134 -13.10947 -12.95033 -12.92008 -12.60254 -12.37189 -12.23538 -11.87834 -11.73083 -11.31475 -11.26979 -11.17190 -10.87825 -10.41813 -10.30435 -10.01250 -9.75485 -8.69784 -8.36219 -6.15146 0.18159 0.62389 1.19544 1.21436 1.40711 1.42383 1.54643 1.57348 1.96644 2.11839 2.25761 2.25900 2.97920 3.15777 3.22039 3.31903 3.53486 3.62437 3.78247 3.92565 3.99151 4.08086 4.19782 4.25429 4.39130 4.43504 4.49838 4.52499 4.58790 4.63335 4.70416 4.75570 4.80817 4.86107 4.93126 5.23089 5.40363 5.40655 5.46709 6.18571 6.41009 6.56933 6.90788 7.04886 7.10345 7.14331 8.73442 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.001818 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.377759 B =15399.240199 C =16945.113236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.352 5.352 3 C 0.108 3.892 4 C -0.129 4.129 5 C 0.607 3.393 6 O -0.567 6.567 7 N -0.707 5.707 8 C 0.136 3.864 9 C -0.110 4.110 10 C 0.101 3.899 11 N -0.651 5.651 12 C 0.552 3.448 13 O -0.570 6.570 14 C -0.119 4.119 15 S -0.152 6.152 16 C -0.546 4.546 17 H 0.082 0.918 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 1.000 3.000 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.273 1.273 24 C 0.113 3.887 25 N -0.225 5.225 26 N -0.098 5.098 27 H 0.107 0.893 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.238 0.762 31 H 0.416 0.584 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.272 0.728 40 H 0.081 0.919 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.323 8.776 -8.966 39.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.137 5.137 3 C -0.050 4.050 4 C -0.269 4.269 5 C 0.392 3.608 6 O -0.445 6.445 7 N -0.358 5.358 8 C 0.013 3.987 9 C -0.129 4.129 10 C -0.020 4.020 11 N -0.387 5.387 12 C 0.341 3.659 13 O -0.449 6.449 14 C -0.270 4.270 15 S 0.075 5.925 16 C -0.694 4.694 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.822 3.178 21 H -0.180 1.180 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.009 4.009 25 N -0.099 5.099 26 N -0.078 5.078 27 H 0.125 0.875 28 H 0.149 0.851 29 H 0.125 0.875 30 H 0.254 0.746 31 H 0.252 0.748 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -35.565 8.579 -9.752 37.862 hybrid contribution -0.634 -0.600 1.386 1.638 sum -36.198 7.980 -8.366 37.999 Atomic orbital electron populations 1.22719 0.69446 1.07787 1.06555 1.50743 1.10747 1.04684 1.47495 1.23912 0.89261 0.96314 0.95546 1.21573 0.95415 0.90320 1.19590 1.16816 0.82278 0.85954 0.75715 1.90809 1.87123 1.14066 1.52533 1.45731 1.04787 1.11616 1.73669 1.21337 0.80896 0.92639 1.03860 1.23221 0.92481 0.99487 0.97753 1.23731 0.76823 1.03878 0.97575 1.50065 1.05151 1.44927 1.38595 1.19749 0.81804 0.81401 0.82928 1.90686 1.37823 1.60459 1.55976 1.23270 1.02728 1.01087 0.99947 1.85579 1.03433 1.56510 1.46948 1.23224 0.96615 1.28915 1.20647 0.89973 1.26147 0.93863 0.98839 1.00286 1.70194 0.98809 1.43202 1.42526 0.84885 0.79081 0.77067 0.76785 1.18046 1.19816 1.19821 1.23328 0.90573 0.94562 0.92442 1.74597 1.13770 1.10907 1.10587 1.81962 0.93739 1.08065 1.24075 0.87509 0.85107 0.87479 0.74576 0.74771 0.89752 0.90075 0.86093 0.87585 0.88579 0.87808 0.87663 0.91931 0.90036 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.15 11.51 127.77 1.47 1.32 16 2 N -0.35 -3.05 4.03 -368.58 -1.49 -4.54 16 3 C 0.11 0.99 11.31 83.85 0.95 1.94 16 4 C -0.13 -2.02 6.99 40.82 0.29 -1.73 16 5 C 0.61 10.44 7.82 86.69 0.68 11.12 16 6 O -0.57 -12.35 16.86 -4.01 -0.07 -12.42 16 7 N -0.71 -9.48 5.55 -466.29 -2.59 -12.07 16 8 C 0.14 1.58 5.51 86.38 0.48 2.05 16 9 C -0.11 -1.39 3.93 -10.13 -0.04 -1.43 16 10 C 0.10 1.67 8.18 86.44 0.71 2.38 16 11 N -0.65 -17.50 3.61 -835.89 -3.02 -20.52 16 12 C 0.55 21.87 8.07 87.65 0.71 22.58 16 13 O -0.57 -28.14 16.59 -3.05 -0.05 -28.19 16 14 C -0.12 -5.00 5.91 71.23 0.42 -4.58 16 15 S -0.15 -8.71 20.57 -56.49 -1.16 -9.87 16 16 C -0.55 -31.85 9.50 67.95 0.65 -31.21 16 17 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 18 C 0.01 0.77 5.49 84.86 0.47 1.24 16 19 N -0.91 -56.70 13.22 21.65 0.29 -56.42 16 20 Si 1.00 44.20 29.55 68.60 2.03 46.23 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 C 0.11 2.12 8.41 86.49 0.73 2.85 16 25 N -0.23 -4.21 12.04 -49.99 -0.60 -4.82 16 26 N -0.10 -1.68 13.78 37.02 0.51 -1.17 16 27 H 0.11 -0.48 8.14 -2.39 -0.02 -0.49 16 28 H 0.13 -1.05 8.14 -2.39 -0.02 -1.07 16 29 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H 0.24 0.40 8.06 -2.91 -0.02 0.38 16 31 H 0.42 4.89 8.16 -92.71 -0.76 4.14 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 0.96 7.87 -2.39 -0.02 0.94 16 34 H 0.12 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.11 1.44 7.92 -2.39 -0.02 1.42 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 3.99 8.14 -2.40 -0.02 3.97 16 38 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 39 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.10 1.62 8.10 -2.39 -0.02 1.60 16 Total: -1.00 -91.51 379.28 1.66 -89.85 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.32 Total: 7.41 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 7.49 Total: 6.53 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -6.90 Total: -99.53 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -0.12 Total: -40.61 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -91.51 1.66 -89.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297195657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.004 kcal (2) G-P(sol) polarization free energy of solvation -91.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds