Wall clock time and date at job start Sat Apr 11 2020 05:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47697 * 2 1 4 4 C 1.53008 * 109.46622 * 119.99935 * 2 1 3 5 5 N 1.46501 * 109.46530 * 174.99853 * 4 2 1 6 6 C 1.34780 * 119.99413 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00414 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99893 * 179.97438 * 6 5 4 9 9 S 1.81001 * 109.47010 * 179.97438 * 8 6 5 10 10 C 1.76201 * 99.99889 * 180.02562 * 9 8 6 11 11 H 1.08002 * 120.00072 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00127 * 180.02562 * 10 9 8 13 13 N 1.31628 * 119.99778 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00168 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46791 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47222 * 119.99366 * 14 12 10 17 17 H 1.48497 * 109.46930 * 239.99782 * 14 12 10 18 18 N 1.46499 * 109.47260 * 239.99548 * 2 1 3 19 19 C 1.34771 * 119.99911 * 85.00104 * 18 2 1 20 20 O 1.21572 * 120.00052 * 0.02562 * 19 18 2 21 21 C 1.47731 * 120.00110 * 179.97438 * 19 18 2 22 22 N 1.33020 * 120.16501 * 354.68031 * 21 19 18 23 23 C 1.31722 * 120.01279 * 180.02562 * 22 21 19 24 24 C 1.38810 * 120.34049 * 359.97438 * 23 22 21 25 25 N 1.32022 * 120.32695 * 0.02588 * 24 23 22 26 26 C 1.32829 * 119.98444 * 359.66157 * 25 24 23 27 27 N 1.38267 * 120.17158 * 180.29670 * 26 25 24 28 28 H 1.09008 * 109.46925 * 59.99661 * 1 2 3 29 29 H 1.08992 * 109.47697 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47442 * 300.00581 * 1 2 3 31 31 H 1.08995 * 109.46996 * 294.99679 * 4 2 1 32 32 H 1.09001 * 109.47105 * 54.99985 * 4 2 1 33 33 H 0.96999 * 120.00763 * 359.97438 * 5 4 2 34 34 H 1.09003 * 109.46970 * 300.00053 * 8 6 5 35 35 H 1.09001 * 109.47070 * 60.00112 * 8 6 5 36 36 H 0.97008 * 119.99973 * 180.02562 * 13 12 10 37 37 H 0.96998 * 120.00310 * 265.00528 * 18 2 1 38 38 H 1.08002 * 119.83009 * 179.97438 * 23 22 21 39 39 H 1.08003 * 119.83225 * 179.97438 * 24 23 22 40 40 H 0.96999 * 120.00827 * 185.69289 * 27 26 25 41 41 H 0.97001 * 119.99865 * 5.69379 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 3.4999 -0.8264 1.1906 6 6 4.1728 -1.4293 2.1908 7 8 3.5697 -1.8843 3.1396 8 6 5.6747 -1.5380 2.1303 9 16 6.2779 -2.3912 3.6083 10 6 8.0097 -2.3783 3.2836 11 1 8.3860 -1.9259 2.3779 12 6 8.8902 -2.9506 4.1911 13 7 8.4316 -3.5024 5.2946 14 14 10.7262 -2.9363 3.8472 15 1 10.9815 -2.2604 2.5499 16 1 11.4276 -2.2055 4.9330 17 1 11.2290 -4.3322 3.7850 18 7 2.0183 -0.6907 -1.1961 19 6 2.1471 -0.0184 -2.3570 20 8 1.8584 1.1612 -2.4116 21 6 2.6401 -0.7148 -3.5631 22 7 3.0576 -1.9752 -3.4834 23 6 3.4971 -2.5930 -4.5606 24 6 3.5271 -1.9357 -5.7828 25 7 3.1160 -0.6847 -5.8772 26 6 2.6644 -0.0513 -4.8005 27 7 2.2271 1.2569 -4.8962 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7515 -0.1583 2.1370 32 1 1.6052 -1.7198 1.2952 33 1 3.9823 -0.4629 0.4317 34 1 5.9627 -2.1009 1.2424 35 1 6.1097 -0.5396 2.0845 36 1 9.0470 -3.9020 5.9291 37 1 2.2490 -1.6318 -1.1525 38 1 3.8357 -3.6163 -4.4925 39 1 3.8894 -2.4500 -6.6607 40 1 1.9759 1.7442 -4.0960 41 1 2.1716 1.6875 -5.7636 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298753095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:57 Heat of formation + Delta-G solvation = -20.723328 kcal Electronic energy + Delta-G solvation = -25972.027749 eV Core-core repulsion = 22013.431860 eV Total energy + Delta-G solvation = -3958.595889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.67650 -40.01504 -39.06739 -36.83021 -35.74497 -34.12943 -33.66282 -32.42980 -31.62188 -29.97542 -29.36002 -26.19638 -25.85757 -25.36621 -24.04214 -22.34197 -21.03108 -20.35831 -18.94084 -18.38554 -17.97402 -17.74133 -16.87067 -16.32120 -16.21389 -15.92433 -15.68358 -15.29119 -15.05228 -14.80603 -14.71942 -14.47978 -14.04635 -13.80309 -13.49173 -13.12861 -12.94434 -12.91301 -12.57531 -12.29118 -12.22791 -12.02354 -11.81031 -11.34555 -11.07150 -11.02235 -11.01987 -10.75791 -10.69243 -9.81335 -9.62839 -9.57204 -9.42556 -9.08252 -8.95705 -8.49902 -8.23724 -6.50111 -6.22016 -3.92359 0.11605 0.87624 2.30994 2.55938 2.99885 3.05248 3.08177 3.21542 3.28035 3.32697 3.44601 3.66112 3.73276 3.90310 4.16074 4.20173 4.35071 4.68774 4.78385 4.79192 4.89053 4.92353 5.13344 5.13505 5.30939 5.36269 5.50222 5.61639 5.73355 5.80612 5.86787 5.88597 6.02682 6.14140 6.52866 6.56432 6.79432 6.96943 7.15853 7.56805 7.59832 7.64332 7.79823 8.35429 8.57037 9.23618 10.85466 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.002493 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.557611 B =11230.205252 C =12927.783466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.129 3.871 3 H 0.099 0.901 4 C 0.113 3.887 5 N -0.740 5.740 6 C 0.533 3.467 7 O -0.516 6.516 8 C -0.154 4.154 9 S -0.060 6.060 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.701 5.701 19 C 0.593 3.407 20 O -0.547 6.547 21 C -0.059 4.059 22 N -0.368 5.368 23 C -0.022 4.022 24 C 0.142 3.858 25 N -0.512 5.512 26 C 0.413 3.587 27 N -0.816 5.816 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.416 0.584 38 H 0.176 0.824 39 H 0.176 0.824 40 H 0.428 0.572 41 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.272 6.490 -22.872 28.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 H 0.117 0.883 4 C -0.012 4.012 5 N -0.395 5.395 6 C 0.319 3.681 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.352 5.352 19 C 0.379 3.621 20 O -0.425 6.425 21 C -0.207 4.207 22 N -0.085 5.085 23 C -0.188 4.188 24 C -0.024 4.024 25 N -0.235 5.235 26 C 0.169 3.831 27 N -0.368 5.368 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.253 0.747 38 H 0.193 0.807 39 H 0.193 0.807 40 H 0.274 0.726 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -16.524 6.599 -20.967 27.499 hybrid contribution 2.214 0.453 -1.889 2.945 sum -14.310 7.052 -22.856 27.873 Atomic orbital electron populations 1.22109 0.93725 1.02916 1.03185 1.21370 0.95184 0.97918 0.83083 0.88309 1.21616 0.81279 1.01444 0.96827 1.45990 1.06719 1.62110 1.24670 1.20310 0.89526 0.76666 0.81563 1.90708 1.69856 1.45970 1.32468 1.23533 0.93498 1.05693 1.07703 1.85380 1.04641 1.73099 1.20176 1.22906 0.91520 1.44185 1.09659 0.90901 1.24993 0.99599 0.94552 0.94467 1.70029 1.35300 1.35562 1.09403 0.86115 0.82988 0.77988 0.78398 1.19625 1.20569 1.20558 1.45873 1.65511 1.15101 1.08738 1.17495 0.76727 0.85502 0.82353 1.90412 1.52881 1.15481 1.83702 1.21137 1.12444 0.93411 0.93705 1.68064 1.02635 1.06110 1.31685 1.23452 1.04143 1.02369 0.88838 1.23876 0.90159 0.89244 0.99104 1.68211 1.15701 1.10544 1.29073 1.19128 0.87506 0.87359 0.89090 1.43306 1.68762 1.09824 1.14880 0.91591 0.91848 0.90790 0.89732 0.90749 0.76734 0.89199 0.89274 0.92240 0.74746 0.80740 0.80668 0.72646 0.76950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.48 37.16 0.35 -0.82 16 2 C 0.13 1.10 2.73 -67.93 -0.19 0.92 16 3 H 0.10 0.91 7.58 -51.93 -0.39 0.52 16 4 C 0.11 1.19 5.23 -4.04 -0.02 1.17 16 5 N -0.74 -9.55 5.39 -60.29 -0.32 -9.87 16 6 C 0.53 9.74 7.85 -10.98 -0.09 9.65 16 7 O -0.52 -11.42 15.86 5.56 0.09 -11.33 16 8 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 11 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 14 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 N -0.70 -6.28 4.51 -54.79 -0.25 -6.53 16 19 C 0.59 6.11 7.75 -12.38 -0.10 6.01 16 20 O -0.55 -6.18 13.31 5.30 0.07 -6.11 16 21 C -0.06 -0.60 6.77 -82.65 -0.56 -1.16 16 22 N -0.37 -3.51 9.71 -9.49 -0.09 -3.60 16 23 C -0.02 -0.16 11.21 -17.39 -0.19 -0.35 16 24 C 0.14 0.92 11.22 -17.26 -0.19 0.73 16 25 N -0.51 -4.62 10.52 -11.99 -0.13 -4.74 16 26 C 0.41 4.05 7.77 -154.87 -1.20 2.84 16 27 N -0.82 -6.64 8.93 31.32 0.28 -6.36 16 28 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.40 4.47 8.14 -40.82 -0.33 4.14 16 34 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.42 3.71 7.96 -40.82 -0.32 3.38 16 38 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.18 0.47 8.06 -52.48 -0.42 0.05 16 40 H 0.43 3.77 5.32 -40.96 -0.22 3.55 16 41 H 0.40 2.43 8.95 -40.82 -0.37 2.07 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -36.11 371.25 -8.01 -44.12 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.98 Total: 8.49 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.77 Total: 3.17 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.22 Total: -56.51 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.16 Total: -17.44 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.11 -8.01 -44.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298753095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.397 kcal (2) G-P(sol) polarization free energy of solvation -36.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds