Wall clock time and date at job start Sat Apr 11 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86798 * 120.00294 * 2 1 4 4 H 1.48502 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47187 * 299.99618 * 3 2 1 6 6 H 1.48496 * 109.47141 * 59.99722 * 3 2 1 7 7 C 1.39947 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00554 * 188.80193 * 7 2 1 9 9 C 1.41404 * 119.99848 * 8.80217 * 7 2 1 10 10 C 1.40716 * 120.24255 * 208.12591 * 9 7 2 11 11 C 1.37616 * 119.74464 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24821 * 0.02566 * 11 10 9 13 13 C 1.50701 * 119.75075 * 179.97438 * 12 11 10 14 14 N 1.46499 * 109.47260 * 89.99726 * 13 12 11 15 15 C 1.34772 * 119.99896 * 180.27313 * 14 13 12 16 16 O 1.21715 * 120.00285 * 359.73185 * 15 14 13 17 17 C 1.46262 * 119.99879 * 179.72254 * 15 14 13 18 18 C 1.34982 * 119.99796 * 173.80854 * 17 15 14 19 19 C 1.46996 * 120.00002 * 346.51317 * 18 17 15 20 20 C 1.39949 * 120.09875 * 316.80395 * 19 18 17 21 21 C 1.37747 * 119.98066 * 179.69558 * 20 19 18 22 22 C 1.38867 * 120.16912 * 0.58526 * 21 20 19 23 23 O 1.35818 * 119.90275 * 179.73474 * 22 21 20 24 24 C 1.39435 * 120.19262 * 359.71678 * 22 21 20 25 25 O 1.35994 * 119.99083 * 179.97438 * 24 22 21 26 26 C 1.38097 * 120.01836 * 359.97438 * 24 22 21 27 27 C 1.38634 * 120.49894 * 0.24656 * 12 11 10 28 28 C 1.37625 * 120.25119 * 359.45199 * 27 12 11 29 29 H 0.97005 * 119.99886 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.12901 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.87649 * 180.02562 * 11 10 9 32 32 H 1.08993 * 109.46957 * 329.99654 * 13 12 11 33 33 H 1.09003 * 109.46988 * 209.99898 * 13 12 11 34 34 H 0.97005 * 119.99526 * 0.02562 * 14 13 12 35 35 H 1.08001 * 119.99872 * 353.81557 * 17 15 14 36 36 H 1.08007 * 119.99404 * 166.51013 * 18 17 15 37 37 H 1.08003 * 120.01161 * 0.02562 * 20 19 18 38 38 H 1.07993 * 119.92083 * 180.27725 * 21 20 19 39 39 H 0.96698 * 114.00646 * 269.97841 * 23 22 21 40 40 H 0.96700 * 114.00529 * 269.98134 * 25 24 22 41 41 H 1.08002 * 120.08225 * 179.97438 * 26 24 22 42 42 H 1.08005 * 119.87786 * 179.70603 * 27 12 11 43 43 H 1.07999 * 120.12558 * 180.26990 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0079 -1.2120 0.0005 8 1 3.0784 -1.2176 0.1437 9 6 1.3133 -2.4294 -0.1863 10 6 1.8122 -3.6224 0.3686 11 6 1.1282 -4.8015 0.1800 12 6 -0.0478 -4.8170 -0.5540 13 6 -0.7875 -6.1146 -0.7541 14 7 -1.7501 -6.3010 0.3344 15 6 -2.5254 -7.4029 0.3670 16 8 -2.4294 -8.2408 -0.5105 17 6 -3.4821 -7.5918 1.4571 18 6 -4.3449 -8.6294 1.4255 19 6 -4.5340 -9.3905 0.1822 20 6 -4.6489 -8.7197 -1.0407 21 6 -4.8197 -9.4356 -2.2051 22 6 -4.8905 -10.8219 -2.1679 23 8 -5.0645 -11.5221 -3.3187 24 6 -4.7832 -11.4972 -0.9528 25 8 -4.8537 -12.8550 -0.9211 26 6 -4.6055 -10.7877 0.2186 27 6 -0.5456 -3.6486 -1.1100 28 6 0.1185 -2.4569 -0.9290 29 1 -0.4850 0.8401 -0.0004 30 1 2.7284 -3.6127 0.9404 31 1 1.5090 -5.7184 0.6053 32 1 -0.0770 -6.9412 -0.7563 33 1 -1.3168 -6.0880 -1.7067 34 1 -1.8268 -5.6330 1.0336 35 1 -3.4983 -6.9011 2.2872 36 1 -4.8963 -8.9004 2.3138 37 1 -4.5983 -7.6413 -1.0722 38 1 -4.9038 -8.9172 -3.1487 39 1 -5.9908 -11.6777 -3.5483 40 1 -5.7500 -13.1999 -0.8077 41 1 -4.5227 -11.3097 1.1604 42 1 -1.4601 -3.6730 -1.6840 43 1 -0.2734 -1.5472 -1.3594 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001299898412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:09 Heat of formation + Delta-G solvation = -77.304314 kcal Electronic energy + Delta-G solvation = -27142.134737 eV Core-core repulsion = 23116.888953 eV Total energy + Delta-G solvation = -4025.245784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33069 -40.54976 -39.47369 -37.91565 -37.73751 -36.23155 -34.99808 -34.16716 -32.11322 -31.25055 -31.16730 -29.65908 -28.46077 -25.85820 -24.36978 -23.73738 -22.90769 -22.59399 -21.79244 -20.61857 -19.74745 -19.24251 -18.80123 -17.95750 -17.36471 -17.16298 -16.90441 -16.52366 -16.23196 -15.94070 -15.69487 -15.65490 -15.25962 -15.02850 -14.66320 -14.50630 -14.23690 -14.09156 -13.83465 -13.59110 -13.50582 -13.32936 -13.00598 -12.89517 -12.79485 -12.73564 -12.49202 -12.28028 -12.08006 -11.51729 -11.28015 -11.16277 -11.13932 -10.85850 -10.69485 -10.04494 -9.63742 -9.40573 -9.24949 -8.95114 -8.60054 -6.39967 -0.34049 0.34953 0.75689 0.83650 1.12095 1.39005 1.46387 1.53105 2.20504 2.37073 2.46393 2.69031 2.84023 3.13450 3.25709 3.71467 3.79085 3.89709 4.01156 4.19860 4.23311 4.30528 4.46298 4.50128 4.54649 4.65225 4.78953 4.87121 4.90304 5.03394 5.03828 5.15026 5.20293 5.33598 5.34131 5.35551 5.43806 5.53696 5.62783 5.68472 5.79101 5.89939 6.09322 6.18901 6.35800 6.64942 6.68409 6.72045 6.92635 6.98486 6.99748 7.35932 8.34194 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.027276 B = 0.001861 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.288323 B =15045.677927 C =15210.393479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.031 3.969 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.495 4.495 8 H 0.074 0.926 9 C 0.082 3.918 10 C -0.238 4.238 11 C -0.074 4.074 12 C -0.219 4.219 13 C 0.195 3.805 14 N -0.710 5.710 15 C 0.524 3.476 16 O -0.573 6.573 17 C -0.211 4.211 18 C -0.018 4.018 19 C -0.068 4.068 20 C -0.044 4.044 21 C -0.154 4.154 22 C 0.077 3.923 23 O -0.503 6.503 24 C 0.059 3.941 25 O -0.500 6.500 26 C -0.115 4.115 27 C -0.086 4.086 28 C -0.184 4.184 29 H 0.287 0.713 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.408 0.592 35 H 0.166 0.834 36 H 0.180 0.820 37 H 0.114 0.886 38 H 0.132 0.868 39 H 0.406 0.594 40 H 0.405 0.595 41 H 0.153 0.847 42 H 0.105 0.895 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.613 -15.744 3.208 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.183 4.183 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.525 4.525 8 H 0.093 0.907 9 C 0.079 3.921 10 C -0.257 4.257 11 C -0.092 4.092 12 C -0.221 4.221 13 C 0.072 3.928 14 N -0.360 5.360 15 C 0.315 3.685 16 O -0.456 6.456 17 C -0.232 4.232 18 C -0.038 4.038 19 C -0.068 4.068 20 C -0.063 4.063 21 C -0.173 4.173 22 C 0.032 3.968 23 O -0.316 6.316 24 C 0.014 3.986 25 O -0.313 6.313 26 C -0.133 4.133 27 C -0.105 4.105 28 C -0.204 4.204 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.244 0.756 35 H 0.183 0.817 36 H 0.197 0.803 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.265 0.735 40 H 0.263 0.737 41 H 0.171 0.829 42 H 0.123 0.877 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.514 -16.135 2.484 21.845 hybrid contribution -0.346 1.267 0.060 1.315 sum -14.860 -14.868 2.543 21.174 Atomic orbital electron populations 1.69837 1.08694 1.30250 1.36721 1.26742 0.95705 1.04414 0.91435 0.85113 0.79225 0.76225 0.78883 1.18355 1.19024 1.19056 1.19907 0.95686 0.91597 1.45302 0.90750 1.18041 0.92372 0.93067 0.88579 1.21219 1.03117 0.93783 1.07591 1.20683 0.94575 0.96654 0.97299 1.19252 0.99345 0.93903 1.09604 1.19686 0.89897 0.93802 0.89458 1.46316 1.38833 1.22671 1.28135 1.19117 0.82016 0.81072 0.86339 1.90881 1.70248 1.43855 1.40577 1.23223 0.98164 1.01450 1.00339 1.22696 0.94423 0.90676 0.95969 1.19045 1.00697 0.93057 0.94030 1.21050 0.94259 0.99424 0.91541 1.21280 1.03651 0.93045 0.99332 1.19026 1.02277 0.89836 0.85646 1.84813 1.33029 1.75118 1.38640 1.18654 1.04617 0.83602 0.91730 1.84889 1.35144 1.15780 1.95467 1.21574 1.00398 0.92907 0.98461 1.20782 0.98343 0.92441 0.98905 1.21401 0.99012 0.96993 1.02954 0.90231 0.88332 0.86777 0.92560 0.92653 0.75623 0.81691 0.80273 0.86815 0.84973 0.73508 0.73659 0.82934 0.87718 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.11 10.70 21.83 0.23 -41.88 16 2 C 0.03 1.52 5.29 85.26 0.45 1.97 16 3 Si 0.98 37.54 29.57 68.60 2.03 39.56 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 6 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 7 C -0.50 -26.16 9.07 23.46 0.21 -25.95 16 8 H 0.07 3.81 7.86 -2.91 -0.02 3.79 16 9 C 0.08 4.30 5.57 -21.29 -0.12 4.18 16 10 C -0.24 -11.23 9.80 22.73 0.22 -11.00 16 11 C -0.07 -3.04 9.67 22.22 0.21 -2.83 16 12 C -0.22 -8.73 5.27 -19.67 -0.10 -8.84 16 13 C 0.19 6.67 5.79 85.63 0.50 7.17 16 14 N -0.71 -20.69 5.54 -471.25 -2.61 -23.31 16 15 C 0.52 14.79 6.78 86.33 0.59 15.38 16 16 O -0.57 -20.06 12.36 -4.40 -0.05 -20.12 16 17 C -0.21 -4.03 9.87 23.61 0.23 -3.79 16 18 C -0.02 -0.30 9.80 23.82 0.23 -0.07 16 19 C -0.07 -1.49 4.49 -20.15 -0.09 -1.58 16 20 C -0.04 -1.12 6.68 22.57 0.15 -0.96 16 21 C -0.15 -3.86 9.96 22.30 0.22 -3.64 16 22 C 0.08 1.86 6.72 22.71 0.15 2.01 16 23 O -0.50 -10.71 13.27 -77.48 -1.03 -11.74 16 24 C 0.06 1.32 6.71 22.52 0.15 1.47 16 25 O -0.50 -9.58 13.28 -79.45 -1.05 -10.64 16 26 C -0.11 -2.35 9.72 22.65 0.22 -2.13 16 27 C -0.09 -3.77 9.67 22.22 0.21 -3.55 16 28 C -0.18 -9.36 8.67 22.73 0.20 -9.16 16 29 H 0.29 13.16 8.30 -92.70 -0.77 12.40 16 30 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 31 H 0.11 4.11 8.06 -2.91 -0.02 4.09 16 32 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 33 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 34 H 0.41 10.85 8.44 -92.70 -0.78 10.07 16 35 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.11 2.94 7.10 -2.91 -0.02 2.92 16 38 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.41 3.81 9.06 -74.06 -0.67 3.14 16 40 H 0.41 2.98 9.06 -74.06 -0.67 2.31 16 41 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 42 H 0.10 4.17 8.06 -2.91 -0.02 4.14 16 43 H 0.11 5.72 6.10 -2.91 -0.02 5.71 16 Total: -1.00 -71.05 374.05 0.12 -70.93 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -1.04 Total: 38.51 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 3.64 Total: -41.32 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: -2.38 Total: -65.19 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -2.14 Total: -42.49 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.56 kcal Total: -71.05 0.12 -70.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299898412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.379 kcal (2) G-P(sol) polarization free energy of solvation -71.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds