Wall clock time and date at job start Sat Apr 11 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99603 * 2 1 4 4 C 1.53002 * 109.46693 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47202 * 65.00084 * 4 3 2 6 6 C 1.46506 * 119.99670 * 269.99991 * 5 4 3 7 7 C 1.50705 * 109.46763 * 269.99594 * 6 5 4 8 8 H 1.07994 * 120.00331 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99720 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99868 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99862 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47137 * 90.00195 * 11 9 7 13 13 H 1.48507 * 109.47005 * 209.99913 * 11 9 7 14 14 H 1.48500 * 109.47390 * 330.00162 * 11 9 7 15 15 C 1.34768 * 120.00349 * 89.99746 * 5 4 3 16 16 O 1.21279 * 120.00243 * 180.02562 * 15 5 4 17 17 C 1.50707 * 119.99969 * 0.02562 * 15 5 4 18 18 N 1.46499 * 109.47166 * 179.97438 * 17 15 5 19 19 C 1.35605 * 119.26461 * 90.00341 * 18 17 15 20 20 C 1.35092 * 120.69955 * 179.71991 * 19 18 17 21 21 C 1.41482 * 119.24492 * 0.02562 * 20 19 18 22 22 O 1.22246 * 120.67990 * 180.02562 * 21 20 19 23 23 C 1.41486 * 118.63755 * 359.97438 * 21 20 19 24 24 N 1.48010 * 120.37301 * 179.97438 * 23 21 20 25 25 O 1.21795 * 119.99897 * 180.02562 * 24 23 21 26 26 O 1.21797 * 120.00223 * 359.97438 * 24 23 21 27 27 C 1.35085 * 119.24778 * 0.02562 * 23 21 20 28 28 H 1.09000 * 109.46703 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47485 * 300.00329 * 1 2 3 30 30 H 1.09002 * 109.46626 * 60.00767 * 1 2 3 31 31 H 1.08995 * 109.47039 * 60.00032 * 3 2 1 32 32 H 1.08995 * 109.47177 * 299.99245 * 3 2 1 33 33 H 1.09001 * 109.47087 * 304.99885 * 4 3 2 34 34 H 1.08997 * 109.46924 * 184.99658 * 4 3 2 35 35 H 1.09001 * 109.47191 * 29.99709 * 6 5 4 36 36 H 1.09002 * 109.47069 * 150.00191 * 6 5 4 37 37 H 0.97002 * 119.99660 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.46874 * 59.99795 * 17 15 5 39 39 H 1.09000 * 109.46706 * 300.00404 * 17 15 5 40 40 H 1.07999 * 119.65027 * 359.73953 * 19 18 17 41 41 H 1.07995 * 120.37318 * 180.02562 * 20 19 18 42 42 H 1.08003 * 119.65257 * 180.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8926 -1.3402 7 6 5.5018 -1.2981 -0.9412 8 1 6.2201 -0.5462 -0.6497 9 6 5.8615 -2.6291 -0.9481 10 7 7.0791 -2.9831 -0.5994 11 14 4.6191 -3.9297 -1.4529 12 1 4.7060 -4.1549 -2.9182 13 1 4.9127 -5.1983 -0.7388 14 1 3.2512 -3.4698 -1.1031 15 6 4.2633 1.3328 -2.3200 16 8 4.6282 0.8190 -3.3562 17 6 4.1305 2.8312 -2.2279 18 7 4.4976 3.4338 -3.5118 19 6 3.5389 3.6288 -4.4508 20 6 3.8440 4.1873 -5.6424 21 6 5.1809 4.5690 -5.9048 22 8 5.4861 5.0770 -6.9740 23 6 6.1570 4.3517 -4.9039 24 7 7.5671 4.7359 -5.1378 25 8 8.4019 4.5454 -4.2716 26 8 7.8929 5.2417 -6.1967 27 6 5.7875 3.7888 -3.7328 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.6885 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8507 0.5686 0.8427 34 1 3.9784 2.1766 0.0901 35 1 3.3858 -1.3632 -0.6712 36 1 3.9139 -1.2123 -2.3644 37 1 7.3319 -3.9195 -0.6039 38 1 4.7925 3.2073 -1.4479 39 1 3.0998 3.0904 -1.9859 40 1 2.5205 3.3349 -4.2436 41 1 3.0762 4.3405 -6.3863 42 1 6.5272 3.6203 -2.9641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340940750.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:23 Heat of formation + Delta-G solvation = -58.978318 kcal Electronic energy + Delta-G solvation = -29873.377281 eV Core-core repulsion = 25438.076909 eV Total energy + Delta-G solvation = -4435.300372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.28992 -41.30246 -39.67325 -38.32016 -37.84266 -36.16028 -35.45691 -33.46497 -32.79149 -32.63772 -30.29366 -29.17900 -27.42366 -26.59362 -26.33607 -23.84055 -23.40435 -23.09667 -22.45913 -19.73776 -19.07920 -18.77630 -17.74047 -17.54095 -17.43615 -17.27955 -17.13342 -16.68169 -16.41221 -15.97087 -15.42139 -15.35900 -15.07130 -14.82739 -14.61297 -14.17074 -13.86211 -13.79158 -13.21531 -13.15490 -12.84407 -12.71288 -12.38037 -12.35354 -12.07503 -11.80143 -11.30279 -11.27343 -11.13635 -11.11390 -10.83868 -10.62294 -10.52440 -10.30701 -9.91376 -9.82379 -9.80826 -9.63880 -8.70972 -8.67344 -8.16528 -6.21342 -4.22134 -0.06422 0.77034 1.23544 1.40819 2.04252 2.56572 3.08563 3.21018 3.26029 3.28586 3.31828 3.59119 3.71226 3.97149 4.07403 4.16987 4.28699 4.29089 4.37520 4.45957 4.83571 4.91945 4.95000 5.03143 5.09471 5.12511 5.16175 5.17930 5.19854 5.50544 5.61549 5.77714 5.87117 6.10017 6.50657 6.53530 6.73850 6.92868 6.97377 7.44798 7.59424 7.73498 7.93132 8.19718 8.38764 8.78530 9.37657 10.91534 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010935 B = 0.003545 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.922539 B = 7897.119605 C = 9420.415543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.042 3.958 4 C 0.103 3.897 5 N -0.571 5.571 6 C 0.221 3.779 7 C -0.538 4.538 8 H 0.074 0.926 9 C 0.076 3.924 10 N -0.893 5.893 11 Si 0.873 3.127 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.262 1.262 15 C 0.482 3.518 16 O -0.519 6.519 17 C 0.060 3.940 18 N -0.439 5.439 19 C 0.138 3.862 20 C -0.246 4.246 21 C 0.407 3.593 22 O -0.474 6.474 23 C -0.222 4.222 24 N 0.057 4.943 25 O -0.197 6.197 26 O -0.130 6.130 27 C 0.257 3.743 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.034 0.966 37 H 0.266 0.734 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.178 0.822 41 H 0.168 0.832 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.225 13.992 3.863 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.036 4.036 4 C -0.021 4.021 5 N -0.302 5.302 6 C 0.101 3.899 7 C -0.576 4.576 8 H 0.092 0.908 9 C -0.127 4.127 10 N -0.531 5.531 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.187 1.187 15 C 0.266 3.734 16 O -0.395 6.395 17 C -0.064 4.064 18 N -0.124 5.124 19 C 0.015 3.985 20 C -0.270 4.270 21 C 0.293 3.707 22 O -0.355 6.355 23 C -0.315 4.315 24 N 0.572 4.428 25 O -0.401 6.401 26 O -0.352 6.352 27 C 0.121 3.879 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.195 0.805 41 H 0.186 0.814 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -16.383 13.321 3.118 21.344 hybrid contribution -0.444 -0.672 0.008 0.805 sum -16.827 12.649 3.125 21.282 Atomic orbital electron populations 1.22740 0.81495 1.02892 0.99436 1.88081 1.19183 1.26790 1.95195 1.23117 0.94818 0.85765 0.99883 1.21716 0.91482 0.99408 0.89537 1.47890 1.63267 1.09370 1.09637 1.19806 0.98227 0.73643 0.98219 1.21252 0.95916 0.93702 1.46723 0.90802 1.24815 0.95149 0.98371 0.94359 1.69880 1.18106 1.17548 1.47529 0.86895 0.82246 0.81555 0.79347 1.20005 1.20955 1.18673 1.20248 0.80275 0.87630 0.85278 1.90818 1.45792 1.73794 1.29125 1.22580 1.05815 0.94681 0.83351 1.42840 1.05751 1.48094 1.15718 1.22058 0.94242 0.93761 0.88443 1.22446 0.98689 1.07805 0.98024 1.16748 0.87445 0.79769 0.86762 1.90949 1.82983 1.37466 1.24111 1.22317 0.85730 1.22370 1.01116 1.42751 1.01502 0.98200 1.00304 1.94525 1.45582 1.60421 1.39607 1.94605 1.84768 1.42400 1.13471 1.21633 0.86167 0.83531 0.96600 0.89639 0.94247 0.94425 0.92241 0.93887 0.87747 0.89620 0.93411 0.94831 0.92375 0.84892 0.85124 0.80510 0.81429 0.79103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.51 9.53 -35.23 -0.34 -4.85 16 3 C 0.04 0.35 6.28 37.16 0.23 0.58 16 4 C 0.10 1.05 5.62 -4.04 -0.02 1.03 16 5 N -0.57 -8.85 2.42 -175.05 -0.42 -9.27 16 6 C 0.22 4.73 4.05 -5.19 -0.02 4.71 16 7 C -0.54 -14.12 9.94 -34.44 -0.34 -14.46 16 8 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 9 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 11 Si 0.87 20.59 27.47 -169.99 -4.67 15.92 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 14 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 15 C 0.48 6.90 7.74 -10.99 -0.09 6.81 16 16 O -0.52 -10.31 16.01 5.56 0.09 -10.22 16 17 C 0.06 0.42 4.59 -5.19 -0.02 0.40 16 18 N -0.44 -3.88 2.09 -118.70 -0.25 -4.13 16 19 C 0.14 1.06 10.25 -17.00 -0.17 0.89 16 20 C -0.25 -2.52 10.01 -39.47 -0.39 -2.91 16 21 C 0.41 6.16 6.76 -37.11 -0.25 5.91 16 22 O -0.47 -8.98 16.15 -16.69 -0.27 -9.25 16 23 C -0.22 -3.30 6.86 -79.84 -0.55 -3.85 16 24 N 0.06 1.01 4.45 34.02 0.15 1.16 16 25 O -0.20 -3.43 18.43 -29.46 -0.54 -3.98 16 26 O -0.13 -2.56 17.51 -36.28 -0.64 -3.19 16 27 C 0.26 2.88 9.79 -17.01 -0.17 2.71 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.04 0.27 7.30 -51.93 -0.38 -0.11 16 33 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 34 H 0.09 0.49 6.44 -51.93 -0.33 0.15 16 35 H 0.05 1.02 6.18 -51.93 -0.32 0.70 16 36 H 0.03 0.80 6.85 -51.93 -0.36 0.44 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.13 0.54 7.25 -51.93 -0.38 0.16 16 39 H 0.13 0.35 7.12 -51.93 -0.37 -0.02 16 40 H 0.18 0.63 8.02 -52.49 -0.42 0.21 16 41 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.19 1.80 7.52 -52.48 -0.39 1.41 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -40.79 368.86 -6.41 -47.20 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -5.07 Total: -4.50 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.78 Total: 5.20 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.25 Total: -37.89 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -1.69 Total: -31.49 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -40.79 -6.41 -47.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340940750.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.781 kcal (2) G-P(sol) polarization free energy of solvation -40.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds