Wall clock time and date at job start Sat Apr 11 2020 05:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99603 * 2 1 4 4 C 1.53002 * 109.46693 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47202 * 65.00084 * 4 3 2 6 6 C 1.46506 * 119.99670 * 269.99991 * 5 4 3 7 7 C 1.50705 * 109.46763 * 269.99594 * 6 5 4 8 8 H 1.07994 * 120.00331 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99720 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99868 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99862 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47137 * 90.00195 * 11 9 7 13 13 H 1.48507 * 109.47005 * 209.99913 * 11 9 7 14 14 H 1.48500 * 109.47390 * 330.00162 * 11 9 7 15 15 C 1.34768 * 120.00349 * 89.99746 * 5 4 3 16 16 O 1.21279 * 120.00243 * 180.02562 * 15 5 4 17 17 C 1.50707 * 119.99969 * 0.02562 * 15 5 4 18 18 N 1.46499 * 109.47166 * 179.97438 * 17 15 5 19 19 C 1.35605 * 119.26461 * 90.00341 * 18 17 15 20 20 C 1.35092 * 120.69955 * 179.71991 * 19 18 17 21 21 C 1.41482 * 119.24492 * 0.02562 * 20 19 18 22 22 O 1.22246 * 120.67990 * 180.02562 * 21 20 19 23 23 C 1.41486 * 118.63755 * 359.97438 * 21 20 19 24 24 N 1.48010 * 120.37301 * 179.97438 * 23 21 20 25 25 O 1.21795 * 119.99897 * 180.02562 * 24 23 21 26 26 O 1.21797 * 120.00223 * 359.97438 * 24 23 21 27 27 C 1.35085 * 119.24778 * 0.02562 * 23 21 20 28 28 H 1.09000 * 109.46703 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47485 * 300.00329 * 1 2 3 30 30 H 1.09002 * 109.46626 * 60.00767 * 1 2 3 31 31 H 1.08995 * 109.47039 * 60.00032 * 3 2 1 32 32 H 1.08995 * 109.47177 * 299.99245 * 3 2 1 33 33 H 1.09001 * 109.47087 * 304.99885 * 4 3 2 34 34 H 1.08997 * 109.46924 * 184.99658 * 4 3 2 35 35 H 1.09001 * 109.47191 * 29.99709 * 6 5 4 36 36 H 1.09002 * 109.47069 * 150.00191 * 6 5 4 37 37 H 0.97002 * 119.99660 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.46874 * 59.99795 * 17 15 5 39 39 H 1.09000 * 109.46706 * 300.00404 * 17 15 5 40 40 H 1.07999 * 119.65027 * 359.73953 * 19 18 17 41 41 H 1.07995 * 120.37318 * 180.02562 * 20 19 18 42 42 H 1.08003 * 119.65257 * 180.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8926 -1.3402 7 6 5.5018 -1.2981 -0.9412 8 1 6.2201 -0.5462 -0.6497 9 6 5.8615 -2.6291 -0.9481 10 7 7.0791 -2.9831 -0.5994 11 14 4.6191 -3.9297 -1.4529 12 1 4.7060 -4.1549 -2.9182 13 1 4.9127 -5.1983 -0.7388 14 1 3.2512 -3.4698 -1.1031 15 6 4.2633 1.3328 -2.3200 16 8 4.6282 0.8190 -3.3562 17 6 4.1305 2.8312 -2.2279 18 7 4.4976 3.4338 -3.5118 19 6 3.5389 3.6288 -4.4508 20 6 3.8440 4.1873 -5.6424 21 6 5.1809 4.5690 -5.9048 22 8 5.4861 5.0770 -6.9740 23 6 6.1570 4.3517 -4.9039 24 7 7.5671 4.7359 -5.1378 25 8 8.4019 4.5454 -4.2716 26 8 7.8929 5.2417 -6.1967 27 6 5.7875 3.7888 -3.7328 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.6885 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8507 0.5686 0.8427 34 1 3.9784 2.1766 0.0901 35 1 3.3858 -1.3632 -0.6712 36 1 3.9139 -1.2123 -2.3644 37 1 7.3319 -3.9195 -0.6039 38 1 4.7925 3.2073 -1.4479 39 1 3.0998 3.0904 -1.9859 40 1 2.5205 3.3349 -4.2436 41 1 3.0762 4.3405 -6.3863 42 1 6.5272 3.6203 -2.9641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340940750.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:22 Heat of formation + Delta-G solvation = -89.446364 kcal Electronic energy + Delta-G solvation = -29874.698475 eV Core-core repulsion = 25438.076909 eV Total energy + Delta-G solvation = -4436.621566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.40270 -42.36299 -40.77618 -39.33924 -38.66065 -37.48209 -36.64949 -34.86416 -34.29083 -33.54857 -31.53072 -30.14433 -28.71150 -27.67922 -27.03448 -24.89716 -24.53188 -24.04048 -23.72300 -20.91415 -20.19945 -19.87786 -19.13106 -18.71894 -18.49783 -18.42618 -18.38749 -17.69395 -17.12893 -16.81949 -16.70783 -16.34409 -16.04150 -15.74939 -15.68898 -15.45420 -14.98068 -14.65823 -14.50870 -14.12672 -13.96504 -13.75782 -13.57498 -13.30660 -13.07164 -12.80560 -12.68508 -12.63515 -12.49049 -12.41967 -12.24590 -12.02768 -11.89376 -11.73020 -11.41516 -10.96723 -10.93630 -10.82266 -10.45670 -9.66604 -9.47469 -8.33783 -6.37238 -1.17170 -0.11838 0.21802 0.26132 1.14039 1.32260 1.34379 1.43163 1.56353 2.09011 2.29544 2.30421 2.91290 3.00356 3.05546 3.14312 3.26896 3.34866 3.59986 3.83719 3.98553 4.15370 4.22239 4.36233 4.40346 4.49387 4.56524 4.63607 4.71570 4.82480 4.94274 4.95724 5.02470 5.03143 5.09750 5.26329 5.34267 5.46690 5.56235 6.20572 6.39486 6.54361 6.56741 6.63167 6.66460 7.16982 7.30376 8.82501 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010935 B = 0.003545 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.922539 B = 7897.119605 C = 9420.415543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.422 6.422 3 C 0.039 3.961 4 C 0.093 3.907 5 N -0.579 5.579 6 C 0.236 3.764 7 C -0.531 4.531 8 H 0.038 0.962 9 C 0.013 3.987 10 N -0.945 5.945 11 Si 0.936 3.064 12 H -0.282 1.282 13 H -0.280 1.280 14 H -0.237 1.237 15 C 0.475 3.525 16 O -0.587 6.587 17 C 0.070 3.930 18 N -0.426 5.426 19 C 0.164 3.836 20 C -0.260 4.260 21 C 0.388 3.612 22 O -0.537 6.537 23 C -0.255 4.255 24 N 0.060 4.940 25 O -0.185 6.185 26 O -0.206 6.206 27 C 0.278 3.722 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.051 0.949 36 H 0.010 0.990 37 H 0.266 0.734 38 H 0.177 0.823 39 H 0.199 0.801 40 H 0.238 0.762 41 H 0.189 0.811 42 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.751 15.090 6.508 26.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.341 6.341 3 C -0.038 4.038 4 C -0.029 4.029 5 N -0.309 5.309 6 C 0.113 3.887 7 C -0.570 4.570 8 H 0.056 0.944 9 C -0.185 4.185 10 N -0.585 5.585 11 Si 0.760 3.240 12 H -0.208 1.208 13 H -0.206 1.206 14 H -0.160 1.160 15 C 0.262 3.738 16 O -0.467 6.467 17 C -0.052 4.052 18 N -0.108 5.108 19 C 0.042 3.958 20 C -0.282 4.282 21 C 0.279 3.721 22 O -0.424 6.424 23 C -0.349 4.349 24 N 0.567 4.433 25 O -0.396 6.396 26 O -0.411 6.411 27 C 0.139 3.861 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.160 0.840 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.195 0.805 39 H 0.216 0.784 40 H 0.255 0.745 41 H 0.206 0.794 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -20.970 14.509 5.714 26.132 hybrid contribution 0.907 -1.084 -0.536 1.511 sum -20.063 13.426 5.178 24.690 Atomic orbital electron populations 1.22833 0.80022 1.02874 1.01042 1.88014 1.21024 1.29477 1.95621 1.23304 0.92579 0.84901 1.02985 1.22165 0.93789 1.01046 0.85893 1.47852 1.63595 1.07181 1.12243 1.19211 0.94803 0.78334 0.96360 1.21631 0.97731 0.92782 1.44840 0.94364 1.25739 0.96915 1.01105 0.94782 1.70036 1.20459 1.17965 1.50085 0.85878 0.81066 0.78774 0.78232 1.20794 1.20588 1.15964 1.21400 0.78134 0.90617 0.83626 1.90812 1.48440 1.75892 1.31550 1.22997 1.10985 0.88346 0.82911 1.43285 1.04902 1.45781 1.16824 1.22926 0.96031 0.90249 0.86577 1.22502 0.96417 1.09106 1.00188 1.17543 0.89506 0.79015 0.86022 1.90916 1.84147 1.40987 1.26340 1.22497 0.83717 1.25423 1.03221 1.43157 1.02866 0.97575 0.99751 1.94455 1.46914 1.59173 1.39072 1.94608 1.85854 1.45939 1.14680 1.21928 0.87756 0.81118 0.95344 0.90719 0.92369 0.92952 0.88911 0.90678 0.90718 0.84022 0.93073 0.97157 0.92526 0.80536 0.78415 0.74545 0.79382 0.77094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -8.44 9.53 -148.98 -1.42 -9.86 16 3 C 0.04 0.39 6.28 71.98 0.45 0.84 16 4 C 0.09 1.41 5.62 86.38 0.49 1.90 16 5 N -0.58 -15.83 2.42 -826.12 -2.00 -17.83 16 6 C 0.24 9.81 4.05 85.63 0.35 10.15 16 7 C -0.53 -28.23 9.94 25.60 0.25 -27.98 16 8 H 0.04 2.24 8.06 -2.91 -0.02 2.21 16 9 C 0.01 0.71 5.47 84.66 0.46 1.18 16 10 N -0.95 -57.70 13.96 21.45 0.30 -57.40 16 11 Si 0.94 42.87 27.47 68.60 1.88 44.75 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.24 -9.72 6.54 99.48 0.65 -9.07 16 15 C 0.48 11.40 7.74 87.66 0.68 12.08 16 16 O -0.59 -21.94 16.01 -3.03 -0.05 -21.99 16 17 C 0.07 0.42 4.59 85.64 0.39 0.81 16 18 N -0.43 -5.03 2.09 -529.46 -1.11 -6.14 16 19 C 0.16 1.55 10.25 83.39 0.85 2.40 16 20 C -0.26 -4.60 10.01 22.34 0.22 -4.38 16 21 C 0.39 11.93 6.76 23.87 0.16 12.09 16 22 O -0.54 -21.93 16.15 14.32 0.23 -21.70 16 23 C -0.25 -7.53 6.86 36.45 0.25 -7.28 16 24 N 0.06 2.24 4.45 -46.29 -0.21 2.03 16 25 O -0.19 -6.57 18.43 18.89 0.35 -6.22 16 26 O -0.21 -8.90 17.51 25.41 0.44 -8.46 16 27 C 0.28 5.36 9.79 83.38 0.82 6.18 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.08 0.27 7.30 -2.39 -0.02 0.25 16 33 H 0.07 1.62 8.07 -2.39 -0.02 1.60 16 34 H 0.14 0.49 6.44 -2.39 -0.02 0.47 16 35 H 0.05 2.11 6.18 -2.39 -0.01 2.09 16 36 H 0.01 0.48 6.85 -2.39 -0.02 0.47 16 37 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.18 -0.21 7.25 -2.39 -0.02 -0.23 16 39 H 0.20 -1.22 7.12 -2.39 -0.02 -1.24 16 40 H 0.24 -0.51 8.02 -2.91 -0.02 -0.53 16 41 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 42 H 0.21 3.19 7.52 -2.91 -0.02 3.17 16 Total: -1.00 -105.11 368.86 6.06 -99.05 By element: Atomic # 1 Polarization: -6.84 SS G_CDS: 1.01 Total: -5.83 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 6.63 Total: 9.59 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -3.01 Total: -79.34 kcal Atomic # 8 Polarization: -67.78 SS G_CDS: -0.44 Total: -68.22 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.88 Total: 44.75 kcal Total: -105.11 6.06 -99.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340940750.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.606 kcal (2) G-P(sol) polarization free energy of solvation -105.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds