Wall clock time and date at job start Sat Apr 11 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28710 * 126.03536 * 2 1 4 4 N 1.28515 * 110.63560 * 180.02562 * 3 2 1 5 5 C 1.33320 * 109.44224 * 359.97438 * 4 3 2 6 6 C 1.37005 * 106.36849 * 359.74027 * 5 4 3 7 7 C 1.47239 * 127.18963 * 180.27150 * 6 5 4 8 8 O 1.21617 * 120.00204 * 186.63108 * 7 6 5 9 9 N 1.34776 * 119.99551 * 6.62853 * 7 6 5 10 10 C 1.47431 * 125.65206 * 5.55020 * 9 7 6 11 11 C 1.55130 * 104.72257 * 155.81317 * 10 9 7 12 12 C 1.55155 * 101.48630 * 37.29744 * 11 10 9 13 13 H 1.08997 * 110.72399 * 82.69118 * 12 11 10 14 14 N 1.46502 * 110.87225 * 205.89725 * 12 11 10 15 15 C 1.34772 * 119.99932 * 200.06554 * 14 12 11 16 16 O 1.21281 * 120.00056 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99897 * 180.02562 * 15 14 12 18 18 S 1.80997 * 109.47364 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00327 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00022 * 359.97438 * 19 18 17 21 21 C 1.38804 * 120.00141 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99711 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99934 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46828 * 90.00256 * 23 21 19 25 25 H 1.48496 * 109.47233 * 210.00071 * 23 21 19 26 26 H 1.48498 * 109.47118 * 330.00329 * 23 21 19 27 27 C 1.47022 * 125.64816 * 185.85441 * 9 7 6 28 28 H 1.09004 * 109.47032 * 85.18614 * 1 2 3 29 29 H 1.08999 * 109.46987 * 205.18672 * 1 2 3 30 30 H 1.09000 * 109.46796 * 325.18409 * 1 2 3 31 31 H 1.07997 * 126.81062 * 180.02562 * 5 4 3 32 32 H 1.09001 * 110.36440 * 274.74504 * 10 9 7 33 33 H 1.08999 * 110.36092 * 37.06399 * 10 9 7 34 34 H 1.08997 * 111.19358 * 279.18903 * 11 10 9 35 35 H 1.09005 * 110.93208 * 155.28810 * 11 10 9 36 36 H 0.97001 * 119.99715 * 20.05980 * 14 12 11 37 37 H 1.09001 * 109.46953 * 299.99589 * 17 15 14 38 38 H 1.08999 * 109.47341 * 59.99508 * 17 15 14 39 39 H 0.97004 * 119.99917 * 179.97438 * 22 21 19 40 40 H 1.09000 * 109.88021 * 300.44005 * 27 9 7 41 41 H 1.09004 * 109.88360 * 61.44849 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4612 0.6995 -0.0005 5 6 3.5552 -0.6303 -0.0004 6 6 2.2712 -1.1081 0.0063 7 6 1.8462 -2.5178 0.0147 8 8 0.6686 -2.7987 -0.1016 9 7 2.7622 -3.4970 0.1512 10 6 4.1991 -3.2987 0.4152 11 6 4.6626 -4.6188 1.0853 12 6 3.8316 -5.6704 0.3038 13 1 4.3157 -5.9205 -0.6401 14 7 3.6213 -6.8745 1.1114 15 6 3.2937 -8.0376 0.5145 16 8 3.1725 -8.0872 -0.6912 17 6 3.0769 -9.2760 1.3453 18 16 2.6521 -10.6625 0.2621 19 6 2.4603 -11.9396 1.4607 20 1 2.6068 -11.7232 2.5086 21 6 2.1218 -13.2242 1.0581 22 7 1.9790 -14.1783 1.9535 23 14 1.8691 -13.5987 -0.7544 24 1 3.1598 -14.0170 -1.3581 25 1 0.8766 -14.6937 -0.8999 26 1 1.3700 -12.3831 -1.4461 27 6 2.4953 -4.9396 0.0552 28 1 -0.3633 0.0862 -1.0241 29 1 -0.3633 -0.9300 0.4373 30 1 -0.3633 0.8437 0.5867 31 1 4.4633 -1.2149 -0.0003 32 1 4.7373 -3.1351 -0.5185 33 1 4.3478 -2.4575 1.0922 34 1 4.4112 -4.6317 2.1458 35 1 5.7310 -4.7765 0.9372 36 1 3.7180 -6.8347 2.0758 37 1 3.9892 -9.5096 1.8941 38 1 2.2633 -9.1032 2.0497 39 1 1.7421 -15.0759 1.6722 40 1 1.7663 -5.2327 0.8107 41 1 2.1170 -5.1813 -0.9381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350498176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:30 Heat of formation + Delta-G solvation = 18.084311 kcal Electronic energy + Delta-G solvation = -26035.567712 eV Core-core repulsion = 22078.654649 eV Total energy + Delta-G solvation = -3956.913063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.46957 -41.44187 -40.45196 -38.63287 -35.87419 -35.35181 -34.66177 -33.14267 -31.94291 -30.80643 -29.28539 -28.95126 -27.83569 -25.97746 -23.89237 -23.59486 -22.33836 -21.69752 -20.93148 -19.90252 -18.74733 -18.27214 -18.05297 -17.87538 -17.50581 -17.12070 -16.96636 -16.60189 -16.35269 -15.73029 -15.58470 -15.20154 -14.91909 -14.68848 -14.55754 -14.32153 -14.12132 -13.93546 -13.81233 -13.49401 -13.35389 -13.32121 -13.01093 -12.82577 -12.63179 -12.53560 -12.27596 -11.87858 -11.83469 -11.45380 -11.33098 -11.16328 -11.02305 -10.68755 -10.51879 -10.27034 -9.91546 -8.98003 -8.50852 -6.21074 -0.25461 0.89272 1.01113 1.13118 1.31783 1.46734 1.52323 1.55720 1.74685 1.82063 2.23634 2.27562 2.72594 2.87574 3.01433 3.28793 3.38497 3.56125 3.65722 3.83541 3.89606 4.04893 4.13663 4.15853 4.25835 4.27425 4.47784 4.50150 4.51742 4.57987 4.69189 4.74659 4.83971 4.91310 5.05478 5.13996 5.22748 5.43383 5.71448 6.11881 6.12600 6.44700 6.68108 6.94624 7.16757 7.18031 8.61346 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029184 B = 0.001962 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.200658 B =14265.613009 C =14714.399359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.253 5.253 3 N -0.076 5.076 4 N -0.299 5.299 5 C 0.008 3.992 6 C -0.078 4.078 7 C 0.607 3.393 8 O -0.569 6.569 9 N -0.595 5.595 10 C 0.076 3.924 11 C -0.122 4.122 12 C 0.138 3.862 13 H 0.101 0.899 14 N -0.702 5.702 15 C 0.539 3.461 16 O -0.557 6.557 17 C -0.113 4.113 18 S -0.178 6.178 19 C -0.527 4.527 20 H 0.063 0.937 21 C 0.044 3.956 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.261 1.261 25 H -0.262 1.262 26 H -0.237 1.237 27 C 0.101 3.899 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.242 0.758 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.421 0.579 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.276 0.724 40 H 0.066 0.934 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.708 29.906 -0.272 30.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.051 5.051 3 N -0.057 5.057 4 N -0.160 5.160 5 C -0.153 4.153 6 C -0.212 4.212 7 C 0.394 3.606 8 O -0.448 6.448 9 N -0.327 5.327 10 C -0.045 4.045 11 C -0.160 4.160 12 C 0.032 3.968 13 H 0.119 0.881 14 N -0.356 5.356 15 C 0.324 3.676 16 O -0.434 6.434 17 C -0.264 4.264 18 S 0.049 5.951 19 C -0.675 4.675 20 H 0.082 0.918 21 C -0.161 4.161 22 N -0.555 5.555 23 Si 0.736 3.264 24 H -0.186 1.186 25 H -0.186 1.186 26 H -0.161 1.161 27 C -0.023 4.023 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.144 0.856 31 H 0.258 0.742 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.120 0.880 35 H 0.145 0.855 36 H 0.259 0.741 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.788 31.108 -2.273 31.556 hybrid contribution -0.646 -1.940 1.310 2.429 sum 4.143 29.167 -0.963 29.476 Atomic orbital electron populations 1.22830 0.69853 1.07526 1.06954 1.47959 1.10923 1.03140 1.43047 1.78269 0.97167 1.12000 1.18289 1.74921 1.09253 1.13893 1.17982 1.25009 0.97781 0.91229 1.01263 1.21808 0.92230 0.90077 1.17128 1.16381 0.84469 0.82659 0.77043 1.90820 1.17877 1.83773 1.52369 1.47971 1.10239 1.05293 1.69215 1.23277 0.78195 1.00136 1.02900 1.23192 1.02030 0.90267 1.00526 1.21972 0.93654 0.84196 0.97011 0.88123 1.45641 1.71209 1.07059 1.11683 1.19960 0.75318 0.84578 0.87705 1.90714 1.51058 1.85618 1.16038 1.23282 1.06939 0.94346 1.01792 1.84736 1.91627 1.04197 1.14554 1.22467 1.54349 0.96109 0.94584 0.91844 1.25572 0.93320 0.95018 1.02221 1.70016 1.46957 1.02737 1.35777 0.85869 0.79773 0.80456 0.80289 1.18602 1.18629 1.16082 1.22371 0.99237 0.78820 1.01910 0.87302 0.87313 0.85604 0.74218 0.87295 0.86705 0.87986 0.85504 0.74060 0.86396 0.86934 0.91433 0.91562 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 11.00 127.77 1.41 2.15 16 2 N -0.25 -4.33 3.79 -356.75 -1.35 -5.68 16 3 N -0.08 -1.53 13.14 37.02 0.49 -1.04 16 4 N -0.30 -5.73 12.35 -57.50 -0.71 -6.44 16 5 C 0.01 0.10 10.35 84.18 0.87 0.97 16 6 C -0.08 -1.28 6.91 40.41 0.28 -1.00 16 7 C 0.61 11.58 7.82 86.61 0.68 12.26 16 8 O -0.57 -14.86 15.17 -4.09 -0.06 -14.92 16 9 N -0.59 -8.42 3.33 -815.41 -2.71 -11.13 16 10 C 0.08 0.33 5.14 86.93 0.45 0.78 16 11 C -0.12 -0.46 6.71 32.06 0.22 -0.25 16 12 C 0.14 1.91 3.23 46.18 0.15 2.05 16 13 H 0.10 1.68 7.69 -2.39 -0.02 1.66 16 14 N -0.70 -12.21 5.13 -436.92 -2.24 -14.45 16 15 C 0.54 15.94 7.84 87.66 0.69 16.63 16 16 O -0.56 -21.33 15.59 -3.03 -0.05 -21.37 16 17 C -0.11 -3.84 6.16 71.24 0.44 -3.40 16 18 S -0.18 -8.61 18.55 -56.49 -1.05 -9.66 16 19 C -0.53 -29.91 10.04 67.96 0.68 -29.23 16 20 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 21 C 0.04 2.54 5.50 84.86 0.47 3.01 16 22 N -0.92 -55.10 13.97 21.65 0.30 -54.80 16 23 Si 0.91 44.33 27.74 68.60 1.90 46.24 16 24 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 26 H -0.24 -11.47 6.74 99.48 0.67 -10.80 16 27 C 0.10 1.85 6.62 86.73 0.57 2.42 16 28 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.11 1.44 6.32 -2.39 -0.02 1.42 16 30 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.24 0.91 4.96 -2.91 -0.01 0.90 16 32 H 0.11 0.07 7.79 -2.39 -0.02 0.05 16 33 H 0.12 0.07 5.94 -2.39 -0.01 0.05 16 34 H 0.10 0.19 8.01 -2.39 -0.02 0.17 16 35 H 0.13 -0.05 8.14 -2.38 -0.02 -0.07 16 36 H 0.42 4.53 8.53 -92.71 -0.79 3.74 16 37 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 38 H 0.11 3.55 8.14 -2.40 -0.02 3.53 16 39 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.07 1.41 8.03 -2.39 -0.02 1.39 16 41 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -84.47 359.49 1.67 -82.80 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 0.26 Total: 4.06 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 6.89 Total: 6.39 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -6.23 Total: -93.54 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -0.11 Total: -36.29 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.90 Total: 46.24 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.05 Total: -9.66 kcal Total: -84.47 1.67 -82.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350498176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.882 kcal (2) G-P(sol) polarization free energy of solvation -84.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds