Wall clock time and date at job start Sat Apr 11 2020 05:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28518 * 124.44502 * 2 1 4 4 C 1.31130 * 109.05926 * 179.97438 * 3 2 1 5 5 C 1.40932 * 105.77446 * 0.02562 * 4 3 2 6 6 C 1.47800 * 127.23496 * 179.97438 * 5 4 3 7 7 O 1.21564 * 120.00187 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99859 * 179.97438 * 6 5 4 9 9 C 1.46507 * 119.99867 * 180.02562 * 8 6 5 10 10 H 1.08996 * 112.85030 * 23.80002 * 9 8 6 11 11 C 1.53777 * 113.61245 * 155.00060 * 9 8 6 12 12 C 1.53784 * 87.08221 * 89.11452 * 11 9 8 13 13 H 1.08994 * 113.61591 * 270.79739 * 12 11 9 14 14 N 1.46500 * 113.61757 * 139.97547 * 12 11 9 15 15 C 1.34772 * 120.00383 * 154.99941 * 14 12 11 16 16 O 1.21281 * 119.99720 * 0.02562 * 15 14 12 17 17 C 1.50694 * 120.00401 * 180.02562 * 15 14 12 18 18 S 1.81005 * 109.47415 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99931 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00293 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99843 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99846 * 359.71985 * 21 19 18 23 23 Si 1.86795 * 120.00110 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47088 * 89.99559 * 23 21 19 25 25 H 1.48505 * 109.47015 * 209.99475 * 23 21 19 26 26 H 1.48498 * 109.47362 * 329.99901 * 23 21 19 27 27 C 1.53783 * 113.61230 * 252.49987 * 9 8 6 28 28 N 1.28592 * 124.44174 * 180.29198 * 2 1 3 29 29 H 1.08998 * 109.47274 * 90.01896 * 1 2 3 30 30 H 1.09003 * 109.46996 * 210.02624 * 1 2 3 31 31 H 1.09000 * 109.46615 * 330.02243 * 1 2 3 32 32 H 1.07999 * 127.11429 * 180.02562 * 4 3 2 33 33 H 0.96994 * 119.99871 * 0.02562 * 8 6 5 34 34 H 1.08995 * 113.61810 * 334.56588 * 11 9 8 35 35 H 1.08998 * 113.61510 * 203.65957 * 11 9 8 36 36 H 0.97003 * 119.99680 * 335.00568 * 14 12 11 37 37 H 1.09002 * 109.47362 * 59.99907 * 17 15 14 38 38 H 1.09005 * 109.46865 * 300.00021 * 17 15 14 39 39 H 0.97000 * 120.00210 * 180.02562 * 22 21 19 40 40 H 1.08993 * 113.61377 * 156.33578 * 27 9 8 41 41 H 1.08996 * 113.61647 * 25.42888 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4563 0.7119 0.0006 5 6 3.4658 -0.6974 0.0003 6 6 4.6486 -1.5837 0.0002 7 8 5.7663 -1.1057 -0.0001 8 7 4.4879 -2.9218 0.0005 9 6 5.6603 -3.8003 0.0009 10 1 6.5500 -3.3186 0.4064 11 6 5.3873 -5.1915 0.5967 12 6 4.9898 -5.6342 -0.8214 13 1 3.9339 -5.4833 -1.0460 14 7 5.4592 -6.9774 -1.1702 15 6 4.8103 -7.6958 -2.1078 16 8 3.8379 -7.2301 -2.6632 17 6 5.2928 -9.0777 -2.4661 18 16 4.2212 -9.7781 -3.7457 19 6 4.9932 -11.3465 -3.9664 20 1 5.8645 -11.6064 -3.3837 21 6 4.4820 -12.2478 -4.8901 22 7 3.4173 -11.9329 -5.5972 23 14 5.2999 -13.9108 -5.1236 24 1 4.6902 -14.8970 -4.1958 25 1 5.1077 -14.3646 -6.5245 26 1 6.7521 -13.7930 -4.8363 27 6 5.8994 -4.5091 -1.3427 28 7 2.1923 -1.0605 -0.0054 29 1 -0.3634 -0.0003 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3632 0.8902 0.5135 32 1 4.3131 1.3694 0.0011 33 1 3.5961 -3.3031 0.0004 34 1 4.5607 -5.2078 1.3070 35 1 6.2812 -5.6878 0.9745 36 1 6.2371 -7.3497 -0.7261 37 1 5.2645 -9.7133 -1.5811 38 1 6.3153 -9.0200 -2.8395 39 1 3.0598 -12.5628 -6.2424 40 1 6.9333 -4.8188 -1.4950 41 1 5.4862 -3.9746 -2.1980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353552781.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:40 Heat of formation + Delta-G solvation = 62.772675 kcal Electronic energy + Delta-G solvation = -25285.130765 eV Core-core repulsion = 21330.155534 eV Total energy + Delta-G solvation = -3954.975231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.08500 -40.63386 -39.26841 -37.92696 -34.37900 -34.18711 -33.20814 -32.43891 -32.26302 -29.20890 -28.50185 -26.01331 -25.58492 -25.25233 -23.70383 -22.54973 -21.17891 -20.47022 -19.84425 -18.24348 -17.81340 -17.46512 -17.43106 -16.61940 -16.33015 -15.98047 -15.27400 -15.18333 -14.98825 -14.81295 -14.67726 -14.11944 -13.84115 -13.59856 -13.44678 -13.22401 -12.93584 -12.78607 -12.72557 -12.41070 -12.14138 -11.94715 -11.47618 -11.08445 -11.05974 -11.03485 -10.89925 -10.87163 -10.72722 -10.57163 -9.90535 -9.82172 -9.45772 -9.36869 -9.07833 -8.86922 -8.24823 -6.51078 -6.22665 -3.93222 0.87098 1.52623 1.69582 2.65825 2.86862 3.03094 3.04506 3.21635 3.27468 3.31846 3.46999 3.71747 4.13966 4.19586 4.27892 4.33935 4.47391 4.52097 4.67200 4.69693 4.75567 4.80233 5.10433 5.12563 5.22505 5.31675 5.40879 5.45035 5.53931 5.58395 5.65936 5.81771 5.87004 5.89465 6.03879 6.12712 6.21528 6.63247 7.05599 7.58656 7.64626 7.69336 7.78631 8.34265 8.59137 9.22701 10.84745 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021520 B = 0.001790 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.802927 B =15635.280732 C =16600.043460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.141 5.141 3 N -0.291 5.291 4 C 0.037 3.963 5 C -0.049 4.049 6 C 0.616 3.384 7 O -0.525 6.525 8 N -0.697 5.697 9 C 0.122 3.878 10 H 0.112 0.888 11 C -0.152 4.152 12 C 0.126 3.874 13 H 0.114 0.886 14 N -0.728 5.728 15 C 0.533 3.467 16 O -0.518 6.518 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.164 4.164 28 N -0.247 5.247 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.209 0.791 33 H 0.410 0.590 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.097 0.903 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 23.256 16.279 28.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.044 5.044 3 N -0.130 5.130 4 C -0.147 4.147 5 C -0.212 4.212 6 C 0.399 3.601 7 O -0.399 6.399 8 N -0.348 5.348 9 C 0.017 3.983 10 H 0.130 0.870 11 C -0.191 4.191 12 C 0.020 3.980 13 H 0.132 0.868 14 N -0.381 5.381 15 C 0.319 3.681 16 O -0.392 6.392 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.204 4.204 28 N -0.096 5.096 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.226 0.774 33 H 0.245 0.755 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.234 0.766 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.971 24.303 15.199 28.818 hybrid contribution 2.363 -1.977 0.602 3.139 sum -0.607 22.326 15.801 27.359 Atomic orbital electron populations 1.22319 0.69369 1.06393 1.05685 1.48076 1.09379 0.99146 1.47773 1.74048 1.03856 1.15443 1.19675 1.24872 0.94338 0.93574 1.01884 1.23012 0.91269 0.94879 1.12052 1.16565 0.86003 0.81421 0.76104 1.90828 1.23745 1.75321 1.49962 1.45512 1.10235 1.05041 1.74015 1.21742 0.89346 0.89565 0.97676 0.86974 1.23753 1.03290 0.94864 0.97188 1.22496 0.99839 0.81706 0.93991 0.86835 1.45968 1.33264 1.16566 1.42315 1.20359 0.82748 0.86664 0.78324 1.90696 1.26106 1.71248 1.51105 1.23543 1.05692 0.95372 1.05896 1.85395 1.37462 1.16383 1.44190 1.22869 1.17083 1.01437 1.26979 0.90915 1.25000 0.94991 0.98835 0.94803 1.70019 1.21108 1.36023 1.23143 0.86161 0.79477 0.82183 0.77641 1.20277 1.20751 1.19694 1.23974 1.01571 0.97068 0.97771 1.74384 1.02979 1.15872 1.16370 0.88561 0.87369 0.87435 0.77401 0.75456 0.90037 0.87926 0.76632 0.89199 0.89186 0.92186 0.88458 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.32 11.55 59.85 0.69 1.01 16 2 N -0.14 -1.14 4.35 -16.63 -0.07 -1.21 16 3 N -0.29 -2.65 12.01 30.90 0.37 -2.28 16 4 C 0.04 0.34 12.04 -16.83 -0.20 0.13 16 5 C -0.05 -0.50 7.21 -82.68 -0.60 -1.09 16 6 C 0.62 6.63 7.83 -12.35 -0.10 6.54 16 7 O -0.52 -6.90 16.55 5.31 0.09 -6.81 16 8 N -0.70 -6.31 5.26 -53.97 -0.28 -6.59 16 9 C 0.12 1.04 4.32 -67.12 -0.29 0.75 16 10 H 0.11 0.98 7.46 -51.93 -0.39 0.59 16 11 C -0.15 -1.11 7.58 -25.92 -0.20 -1.30 16 12 C 0.13 1.34 4.12 -67.11 -0.28 1.06 16 13 H 0.11 1.43 7.46 -51.93 -0.39 1.04 16 14 N -0.73 -9.03 5.35 -53.02 -0.28 -9.31 16 15 C 0.53 9.62 7.85 -10.99 -0.09 9.53 16 16 O -0.52 -11.47 15.46 5.56 0.09 -11.38 16 17 C -0.15 -3.05 6.16 36.00 0.22 -2.82 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 23 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C -0.16 -1.62 7.68 -25.91 -0.20 -1.82 16 28 N -0.25 -2.35 11.84 33.42 0.40 -1.95 16 29 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.21 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.41 3.35 8.47 -40.82 -0.35 3.01 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.58 8.12 -51.93 -0.42 0.16 16 36 H 0.40 3.72 8.73 -40.82 -0.36 3.36 16 37 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 38 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -38.22 376.36 -6.61 -44.83 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.25 Total: 2.88 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.83 Total: -0.92 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.86 Total: -46.70 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.17 Total: -18.19 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.22 -6.61 -44.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353552781.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.602 kcal (2) G-P(sol) polarization free energy of solvation -38.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds