Wall clock time and date at job start Sat Apr 11 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28518 * 124.44502 * 2 1 4 4 C 1.31130 * 109.05926 * 179.97438 * 3 2 1 5 5 C 1.40932 * 105.77446 * 0.02562 * 4 3 2 6 6 C 1.47800 * 127.23496 * 179.97438 * 5 4 3 7 7 O 1.21564 * 120.00187 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99859 * 179.97438 * 6 5 4 9 9 C 1.46507 * 119.99867 * 180.02562 * 8 6 5 10 10 H 1.08996 * 112.85030 * 23.80002 * 9 8 6 11 11 C 1.53777 * 113.61245 * 155.00060 * 9 8 6 12 12 C 1.53784 * 87.08221 * 89.11452 * 11 9 8 13 13 H 1.08994 * 113.61591 * 270.79739 * 12 11 9 14 14 N 1.46500 * 113.61757 * 139.97547 * 12 11 9 15 15 C 1.34772 * 120.00383 * 154.99941 * 14 12 11 16 16 O 1.21281 * 119.99720 * 0.02562 * 15 14 12 17 17 C 1.50694 * 120.00401 * 180.02562 * 15 14 12 18 18 S 1.81005 * 109.47415 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99931 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00293 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99843 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99846 * 359.71985 * 21 19 18 23 23 Si 1.86795 * 120.00110 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47088 * 89.99559 * 23 21 19 25 25 H 1.48505 * 109.47015 * 209.99475 * 23 21 19 26 26 H 1.48498 * 109.47362 * 329.99901 * 23 21 19 27 27 C 1.53783 * 113.61230 * 252.49987 * 9 8 6 28 28 N 1.28592 * 124.44174 * 180.29198 * 2 1 3 29 29 H 1.08998 * 109.47274 * 90.01896 * 1 2 3 30 30 H 1.09003 * 109.46996 * 210.02624 * 1 2 3 31 31 H 1.09000 * 109.46615 * 330.02243 * 1 2 3 32 32 H 1.07999 * 127.11429 * 180.02562 * 4 3 2 33 33 H 0.96994 * 119.99871 * 0.02562 * 8 6 5 34 34 H 1.08995 * 113.61810 * 334.56588 * 11 9 8 35 35 H 1.08998 * 113.61510 * 203.65957 * 11 9 8 36 36 H 0.97003 * 119.99680 * 335.00568 * 14 12 11 37 37 H 1.09002 * 109.47362 * 59.99907 * 17 15 14 38 38 H 1.09005 * 109.46865 * 300.00021 * 17 15 14 39 39 H 0.97000 * 120.00210 * 180.02562 * 22 21 19 40 40 H 1.08993 * 113.61377 * 156.33578 * 27 9 8 41 41 H 1.08996 * 113.61647 * 25.42888 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4563 0.7119 0.0006 5 6 3.4658 -0.6974 0.0003 6 6 4.6486 -1.5837 0.0002 7 8 5.7663 -1.1057 -0.0001 8 7 4.4879 -2.9218 0.0005 9 6 5.6603 -3.8003 0.0009 10 1 6.5500 -3.3186 0.4064 11 6 5.3873 -5.1915 0.5967 12 6 4.9898 -5.6342 -0.8214 13 1 3.9339 -5.4833 -1.0460 14 7 5.4592 -6.9774 -1.1702 15 6 4.8103 -7.6958 -2.1078 16 8 3.8379 -7.2301 -2.6632 17 6 5.2928 -9.0777 -2.4661 18 16 4.2212 -9.7781 -3.7457 19 6 4.9932 -11.3465 -3.9664 20 1 5.8645 -11.6064 -3.3837 21 6 4.4820 -12.2478 -4.8901 22 7 3.4173 -11.9329 -5.5972 23 14 5.2999 -13.9108 -5.1236 24 1 4.6902 -14.8970 -4.1958 25 1 5.1077 -14.3646 -6.5245 26 1 6.7521 -13.7930 -4.8363 27 6 5.8994 -4.5091 -1.3427 28 7 2.1923 -1.0605 -0.0054 29 1 -0.3634 -0.0003 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3632 0.8902 0.5135 32 1 4.3131 1.3694 0.0011 33 1 3.5961 -3.3031 0.0004 34 1 4.5607 -5.2078 1.3070 35 1 6.2812 -5.6878 0.9745 36 1 6.2371 -7.3497 -0.7261 37 1 5.2645 -9.7133 -1.5811 38 1 6.3153 -9.0200 -2.8395 39 1 3.0598 -12.5628 -6.2424 40 1 6.9333 -4.8188 -1.4950 41 1 5.4862 -3.9746 -2.1980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353552781.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:39 Heat of formation + Delta-G solvation = 31.858844 kcal Electronic energy + Delta-G solvation = -25286.471289 eV Core-core repulsion = 21330.155534 eV Total energy + Delta-G solvation = -3956.315755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.74121 -41.52001 -40.41196 -38.99474 -35.32262 -34.82081 -34.57796 -34.04490 -33.18609 -30.65972 -29.02950 -27.67965 -26.73758 -26.10106 -24.54816 -23.16561 -22.00403 -21.73046 -20.70656 -19.78345 -18.92678 -18.16633 -18.05785 -17.80402 -17.48398 -16.89434 -16.87067 -16.42016 -16.03443 -15.87154 -15.84349 -15.54866 -14.88938 -14.56308 -14.50656 -14.01966 -13.84554 -13.67378 -13.49414 -13.32102 -13.26500 -13.15818 -12.97017 -12.88677 -12.58851 -12.16987 -11.93398 -11.78251 -11.60112 -11.59069 -11.41111 -11.13744 -10.89808 -10.55378 -10.26400 -10.20423 -9.96956 -8.65829 -8.34247 -6.12043 0.14440 0.84157 1.21763 1.28362 1.42859 1.48262 1.58656 1.62120 1.94947 2.08196 2.27247 2.34791 2.83013 2.99899 3.32885 3.39534 3.55113 3.68897 3.88721 3.96226 3.99003 4.06655 4.27158 4.29203 4.33607 4.47054 4.52940 4.57565 4.65333 4.75136 4.78889 4.86640 4.90686 5.00582 5.02245 5.38379 5.42543 5.48336 5.61204 6.20374 6.29530 6.56273 6.93140 7.04311 7.07162 7.29033 8.74904 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021520 B = 0.001790 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.802927 B =15635.280732 C =16600.043460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.135 5.135 3 N -0.300 5.300 4 C 0.030 3.970 5 C -0.070 4.070 6 C 0.616 3.384 7 O -0.553 6.553 8 N -0.692 5.692 9 C 0.125 3.875 10 H 0.117 0.883 11 C -0.126 4.126 12 C 0.113 3.887 13 H 0.092 0.908 14 N -0.700 5.700 15 C 0.534 3.466 16 O -0.567 6.567 17 C -0.130 4.130 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.258 1.258 27 C -0.162 4.162 28 N -0.255 5.255 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.225 0.775 33 H 0.414 0.586 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.419 0.581 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.271 0.729 40 H 0.111 0.889 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.781 22.855 18.234 29.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.040 5.040 3 N -0.141 5.141 4 C -0.152 4.152 5 C -0.231 4.231 6 C 0.400 3.600 7 O -0.430 6.430 8 N -0.342 5.342 9 C 0.020 3.980 10 H 0.135 0.865 11 C -0.165 4.165 12 C 0.008 3.992 13 H 0.110 0.890 14 N -0.353 5.353 15 C 0.320 3.680 16 O -0.446 6.446 17 C -0.282 4.282 18 S 0.073 5.927 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.182 1.182 27 C -0.202 4.202 28 N -0.105 5.105 29 H 0.127 0.873 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.242 0.758 33 H 0.250 0.750 34 H 0.111 0.889 35 H 0.149 0.851 36 H 0.257 0.743 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.130 0.870 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.522 23.911 17.207 29.498 hybrid contribution 1.869 -1.724 0.052 2.543 sum 0.347 22.187 17.259 28.111 Atomic orbital electron populations 1.22801 0.66926 1.08200 1.07109 1.48618 1.10687 0.98534 1.46129 1.74042 1.03999 1.15906 1.20109 1.25208 0.94957 0.93553 1.01504 1.22988 0.91365 0.95283 1.13484 1.16671 0.85840 0.81848 0.75594 1.90802 1.24751 1.75852 1.51558 1.45528 1.10753 1.04722 1.73186 1.21756 0.89335 0.90077 0.96855 0.86465 1.23693 1.04785 0.93078 0.94920 1.22690 0.98994 0.80583 0.96981 0.89030 1.45704 1.32810 1.16591 1.40185 1.20107 0.82495 0.86330 0.79090 1.90687 1.28460 1.72086 1.53339 1.23391 1.04511 0.96384 1.03872 1.85586 1.41149 1.17770 1.48233 1.23211 1.17295 1.01568 1.27247 0.89841 1.26141 0.95531 1.03335 0.94271 1.70187 1.22922 1.37695 1.24010 0.84947 0.78867 0.76445 0.77683 1.19287 1.20400 1.18166 1.23991 1.01904 0.96619 0.97715 1.74346 1.02978 1.16565 1.16607 0.87280 0.85864 0.85441 0.75838 0.74986 0.88855 0.85070 0.74291 0.87032 0.87240 0.92035 0.87038 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 11.55 127.77 1.48 1.89 16 2 N -0.14 -2.07 4.35 -206.53 -0.90 -2.97 16 3 N -0.30 -5.29 12.01 -56.16 -0.67 -5.96 16 4 C 0.03 0.55 12.04 85.46 1.03 1.58 16 5 C -0.07 -1.41 7.21 42.25 0.30 -1.10 16 6 C 0.62 13.19 7.83 86.77 0.68 13.86 16 7 O -0.55 -14.48 16.55 -3.92 -0.06 -14.55 16 8 N -0.69 -12.07 5.26 -442.94 -2.33 -14.40 16 9 C 0.13 1.91 4.32 45.52 0.20 2.10 16 10 H 0.12 1.78 7.46 -2.39 -0.02 1.76 16 11 C -0.13 -1.44 7.58 31.12 0.24 -1.21 16 12 C 0.11 2.23 4.12 45.52 0.19 2.42 16 13 H 0.09 2.30 7.46 -2.39 -0.02 2.28 16 14 N -0.70 -15.83 5.35 -440.04 -2.36 -18.19 16 15 C 0.53 18.90 7.85 87.66 0.69 19.59 16 16 O -0.57 -25.75 15.46 -3.03 -0.05 -25.80 16 17 C -0.13 -5.00 6.16 71.23 0.44 -4.57 16 18 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 19 C -0.55 -30.93 9.50 67.96 0.65 -30.28 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.67 5.49 84.86 0.47 1.14 16 22 N -0.91 -55.92 13.22 21.65 0.29 -55.64 16 23 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 27 C -0.16 -3.01 7.68 31.12 0.24 -2.77 16 28 N -0.25 -4.75 11.84 -48.17 -0.57 -5.32 16 29 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.23 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.41 6.58 8.47 -92.71 -0.79 5.80 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.13 0.85 8.12 -2.39 -0.02 0.83 16 36 H 0.42 6.25 8.73 -92.71 -0.81 5.45 16 37 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 39 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -86.07 376.36 0.30 -85.77 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -0.50 Total: 18.70 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 6.59 Total: 2.65 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -6.54 Total: -102.47 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -0.11 Total: -40.35 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -86.07 0.30 -85.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353552781.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.627 kcal (2) G-P(sol) polarization free energy of solvation -86.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds