Wall clock time and date at job start Sat Apr 11 2020 05:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48496 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47417 * 300.00313 * 3 2 1 6 6 H 1.48503 * 109.47002 * 60.00146 * 3 2 1 7 7 C 1.39939 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99935 * 197.85623 * 7 2 1 9 9 C 1.41394 * 119.99918 * 17.85315 * 7 2 1 10 10 C 1.40719 * 120.24460 * 204.37696 * 9 7 2 11 11 C 1.37614 * 119.74658 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24963 * 0.03303 * 11 10 9 13 13 C 1.50697 * 119.75259 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47366 * 89.99879 * 13 12 11 15 15 C 1.34769 * 120.00381 * 180.02562 * 14 13 12 16 16 O 1.21289 * 119.99929 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00159 * 179.97438 * 15 14 13 18 18 C 1.50710 * 109.47176 * 180.02562 * 17 15 14 19 19 C 1.38255 * 119.92525 * 269.72883 * 18 17 15 20 20 C 1.38239 * 120.13852 * 179.69028 * 19 18 17 21 21 C 1.38546 * 120.02912 * 0.63454 * 20 19 18 22 22 C 1.39267 * 119.82837 * 359.64230 * 21 20 19 23 23 C 1.38234 * 119.92862 * 89.99966 * 18 17 15 24 24 O 1.36498 * 108.63768 * 179.97438 * 22 21 20 25 25 C 1.43982 * 105.48622 * 342.72332 * 24 22 21 26 26 O 1.36497 * 131.52887 * 179.64016 * 21 20 19 27 27 C 1.38642 * 120.50139 * 0.24450 * 12 11 10 28 28 C 1.37625 * 120.24249 * 359.44934 * 27 12 11 29 29 H 0.96997 * 120.00535 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.12523 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.87932 * 179.97438 * 11 10 9 32 32 H 1.08999 * 109.47221 * 210.00119 * 13 12 11 33 33 H 1.08998 * 109.46871 * 329.99744 * 13 12 11 34 34 H 0.97009 * 119.99561 * 0.02562 * 14 13 12 35 35 H 1.08999 * 109.47225 * 299.99842 * 17 15 14 36 36 H 1.08998 * 109.47157 * 60.00286 * 17 15 14 37 37 H 1.08003 * 119.93015 * 359.97438 * 19 18 17 38 38 H 1.08003 * 119.98414 * 180.27264 * 20 19 18 39 39 H 1.07998 * 119.98583 * 0.02562 * 23 18 17 40 40 H 1.09003 * 110.57300 * 268.55269 * 25 24 22 41 41 H 1.09009 * 110.57429 * 145.68336 * 25 24 22 42 42 H 1.07993 * 119.87779 * 179.70737 * 27 12 11 43 43 H 1.07998 * 120.12464 * 180.27581 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7021 1.3465 -0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8834 2.3965 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2863 9 6 1.3521 -2.4068 -0.3765 10 6 1.8259 -3.6499 0.0821 11 6 1.1801 -4.8065 -0.2906 12 6 0.0670 -4.7502 -1.1151 13 6 -0.6314 -6.0237 -1.5167 14 7 -1.6745 -6.3384 -0.5375 15 6 -2.4339 -7.4410 -0.6925 16 8 -2.2533 -8.1730 -1.6425 17 6 -3.5065 -7.7650 0.3152 18 6 -4.2042 -9.0393 -0.0858 19 6 -5.3181 -8.9879 -0.9032 20 6 -5.9576 -10.1544 -1.2790 21 6 -5.4909 -11.3778 -0.8261 22 6 -4.3723 -11.4291 0.0019 23 6 -3.7323 -10.2564 0.3689 24 8 -4.1158 -12.7343 0.3082 25 6 -5.3263 -13.4479 -0.0057 26 8 -5.9349 -12.6508 -1.0391 27 6 -0.4053 -3.5314 -1.5775 28 6 0.2212 -2.3616 -1.2125 29 1 -0.4851 0.8400 0.0004 30 1 2.6932 -3.6961 0.7241 31 1 1.5421 -5.7617 0.0598 32 1 -1.0832 -5.8957 -2.5004 33 1 0.0915 -6.8388 -1.5522 34 1 -1.8187 -5.7531 0.2226 35 1 -3.0544 -7.8928 1.2987 36 1 -4.2296 -6.9502 0.3508 37 1 -5.6866 -8.0347 -1.2526 38 1 -6.8249 -10.1117 -1.9211 39 1 -2.8649 -10.2932 1.0112 40 1 -5.9756 -13.5035 0.8681 41 1 -5.0968 -14.4465 -0.3776 42 1 -1.2704 -3.4996 -2.2232 43 1 -0.1510 -1.4130 -1.5703 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361418438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:02 Heat of formation + Delta-G solvation = -61.349432 kcal Electronic energy + Delta-G solvation = -26911.593378 eV Core-core repulsion = 22887.039450 eV Total energy + Delta-G solvation = -4024.553928 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.35770 -39.70443 -38.11894 -37.54383 -36.49560 -34.72047 -33.44320 -32.44493 -30.66080 -30.35917 -29.39314 -28.09245 -26.62548 -25.71291 -23.72269 -23.17010 -22.29190 -21.10717 -20.20446 -20.09889 -18.14745 -17.79918 -17.59724 -17.42100 -16.92209 -16.47961 -15.59449 -15.44943 -15.19782 -14.67896 -14.48198 -14.22899 -14.05909 -13.84759 -13.82201 -13.59717 -13.31202 -13.19372 -12.86211 -12.55723 -12.38360 -12.28422 -12.06315 -11.74136 -11.69456 -11.29051 -11.18652 -11.06147 -11.03551 -10.74634 -10.47454 -9.83451 -9.64428 -9.51183 -9.25217 -9.00833 -8.66347 -8.21296 -7.60085 -7.47739 -6.89991 -4.49140 0.92587 1.05685 2.52703 2.54391 2.86324 2.95346 2.99462 3.01803 3.06237 3.19546 3.31182 3.81060 3.84230 4.29186 4.36868 4.46566 4.52051 4.64105 4.77335 4.95412 5.01404 5.13635 5.20297 5.37867 5.38619 5.57230 5.78261 5.83827 5.88663 5.89475 6.02120 6.17036 6.21185 6.28315 6.32086 6.32411 6.81905 6.84176 6.91734 6.95045 7.15591 7.23755 7.48454 7.67177 7.90690 7.93239 7.98931 8.16666 8.49551 8.51796 8.76213 8.83786 10.04020 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.034817 B = 0.001693 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.012418 B =16533.474110 C =16839.281479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.116 3.884 10 C -0.229 4.229 11 C -0.070 4.070 12 C -0.245 4.245 13 C 0.185 3.815 14 N -0.718 5.718 15 C 0.506 3.494 16 O -0.544 6.544 17 C -0.103 4.103 18 C -0.048 4.048 19 C -0.094 4.094 20 C -0.097 4.097 21 C 0.026 3.974 22 C 0.031 3.969 23 C -0.085 4.085 24 O -0.310 6.310 25 C 0.213 3.787 26 O -0.311 6.311 27 C -0.081 4.081 28 C -0.169 4.169 29 H 0.282 0.718 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.402 0.598 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.129 0.871 42 H 0.088 0.912 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.205 -15.777 2.697 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.113 3.887 10 C -0.249 4.249 11 C -0.089 4.089 12 C -0.247 4.247 13 C 0.063 3.937 14 N -0.369 5.369 15 C 0.291 3.709 16 O -0.422 6.422 17 C -0.143 4.143 18 C -0.049 4.049 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.019 4.019 22 C -0.013 4.013 23 C -0.104 4.104 24 O -0.226 6.226 25 C 0.101 3.899 26 O -0.228 6.228 27 C -0.100 4.100 28 C -0.188 4.188 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.236 0.764 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.100 0.900 41 H 0.147 0.853 42 H 0.106 0.894 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.212 -16.354 1.937 20.502 hybrid contribution 0.246 0.829 0.484 0.991 sum -11.965 -15.525 2.421 19.750 Atomic orbital electron populations 1.69818 1.07654 1.29378 1.34374 1.25948 0.94754 1.01500 0.92101 0.86255 0.81068 0.80763 0.78665 1.18302 1.19595 1.19903 1.19695 0.98242 0.91274 1.39442 0.90226 1.17681 0.90896 0.92069 0.88063 1.20977 1.03954 0.92812 1.07159 1.20407 0.95131 0.96497 0.96869 1.18990 1.02084 0.92735 1.10895 1.19940 0.88064 0.95061 0.90634 1.46534 1.35897 1.25438 1.29023 1.20450 0.82498 0.81290 0.86616 1.90714 1.69837 1.49397 1.32255 1.20682 0.97694 0.96089 0.99791 1.19014 0.95324 0.93065 0.97514 1.20788 0.95323 0.97788 0.97356 1.20006 1.01453 0.87843 1.02301 1.19785 0.95892 0.86055 1.00124 1.19675 0.96543 0.85132 0.99929 1.19862 1.00718 0.87873 1.01922 1.87362 1.35909 1.15977 1.83372 1.25600 0.80694 0.94255 0.89303 1.87349 1.68600 1.16020 1.50810 1.20562 0.98082 0.92560 0.98840 1.21314 0.99535 0.96782 1.01215 0.90741 0.88904 0.89386 0.92402 0.92480 0.76400 0.87689 0.87438 0.84437 0.84709 0.84828 0.90007 0.85313 0.89391 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.26 10.95 55.55 0.61 -18.65 16 2 C 0.08 1.80 5.14 -17.35 -0.09 1.71 16 3 Si 0.91 17.78 29.60 -169.99 -5.03 12.75 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.56 9.05 -37.74 -0.34 -11.90 16 8 H 0.08 1.94 7.91 -52.48 -0.42 1.53 16 9 C 0.12 2.92 5.57 -106.83 -0.60 2.32 16 10 C -0.23 -5.30 9.80 -38.87 -0.38 -5.68 16 11 C -0.07 -1.46 9.67 -39.66 -0.38 -1.84 16 12 C -0.25 -4.91 5.27 -104.33 -0.55 -5.46 16 13 C 0.18 3.22 5.79 -5.20 -0.03 3.19 16 14 N -0.72 -10.62 5.55 -61.48 -0.34 -10.96 16 15 C 0.51 7.29 7.82 -10.99 -0.09 7.21 16 16 O -0.54 -10.04 16.03 5.55 0.09 -9.96 16 17 C -0.10 -1.03 5.83 -29.03 -0.17 -1.20 16 18 C -0.05 -0.55 4.37 -104.61 -0.46 -1.00 16 19 C -0.09 -0.99 9.69 -39.57 -0.38 -1.37 16 20 C -0.10 -1.04 10.06 -39.47 -0.40 -1.44 16 21 C 0.03 0.31 7.15 -39.09 -0.28 0.03 16 22 C 0.03 0.39 7.15 -39.09 -0.28 0.11 16 23 C -0.09 -1.01 9.71 -39.47 -0.38 -1.40 16 24 O -0.31 -3.64 11.40 -45.68 -0.52 -4.16 16 25 C 0.21 1.74 8.89 101.05 0.90 2.64 16 26 O -0.31 -3.51 11.40 -45.68 -0.52 -4.03 16 27 C -0.08 -1.76 9.67 -39.66 -0.38 -2.15 16 28 C -0.17 -4.13 8.70 -38.87 -0.34 -4.47 16 29 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 30 H 0.09 2.04 8.06 -52.49 -0.42 1.61 16 31 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 33 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.40 5.38 8.46 -40.82 -0.35 5.03 16 35 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.11 0.82 8.08 -51.93 -0.42 0.40 16 37 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 39 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.13 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.12 3.00 6.16 -52.49 -0.32 2.68 16 LS Contribution 373.37 15.07 5.63 5.63 Total: -1.00 -30.40 373.37 -10.00 -40.40 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.28 Total: 9.68 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -4.63 Total: -20.69 kcal Atomic # 7 Polarization: -29.88 SS G_CDS: 0.27 Total: -29.62 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.95 Total: -18.14 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.40 -10.00 -40.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361418438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.949 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds