Wall clock time and date at job start Sat Apr 11 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48496 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47417 * 300.00313 * 3 2 1 6 6 H 1.48503 * 109.47002 * 60.00146 * 3 2 1 7 7 C 1.39939 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99935 * 197.85623 * 7 2 1 9 9 C 1.41394 * 119.99918 * 17.85315 * 7 2 1 10 10 C 1.40719 * 120.24460 * 204.37696 * 9 7 2 11 11 C 1.37614 * 119.74658 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24963 * 0.03303 * 11 10 9 13 13 C 1.50697 * 119.75259 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47366 * 89.99879 * 13 12 11 15 15 C 1.34769 * 120.00381 * 180.02562 * 14 13 12 16 16 O 1.21289 * 119.99929 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00159 * 179.97438 * 15 14 13 18 18 C 1.50710 * 109.47176 * 180.02562 * 17 15 14 19 19 C 1.38255 * 119.92525 * 269.72883 * 18 17 15 20 20 C 1.38239 * 120.13852 * 179.69028 * 19 18 17 21 21 C 1.38546 * 120.02912 * 0.63454 * 20 19 18 22 22 C 1.39267 * 119.82837 * 359.64230 * 21 20 19 23 23 C 1.38234 * 119.92862 * 89.99966 * 18 17 15 24 24 O 1.36498 * 108.63768 * 179.97438 * 22 21 20 25 25 C 1.43982 * 105.48622 * 342.72332 * 24 22 21 26 26 O 1.36497 * 131.52887 * 179.64016 * 21 20 19 27 27 C 1.38642 * 120.50139 * 0.24450 * 12 11 10 28 28 C 1.37625 * 120.24249 * 359.44934 * 27 12 11 29 29 H 0.96997 * 120.00535 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.12523 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.87932 * 179.97438 * 11 10 9 32 32 H 1.08999 * 109.47221 * 210.00119 * 13 12 11 33 33 H 1.08998 * 109.46871 * 329.99744 * 13 12 11 34 34 H 0.97009 * 119.99561 * 0.02562 * 14 13 12 35 35 H 1.08999 * 109.47225 * 299.99842 * 17 15 14 36 36 H 1.08998 * 109.47157 * 60.00286 * 17 15 14 37 37 H 1.08003 * 119.93015 * 359.97438 * 19 18 17 38 38 H 1.08003 * 119.98414 * 180.27264 * 20 19 18 39 39 H 1.07998 * 119.98583 * 0.02562 * 23 18 17 40 40 H 1.09003 * 110.57300 * 268.55269 * 25 24 22 41 41 H 1.09009 * 110.57429 * 145.68336 * 25 24 22 42 42 H 1.07993 * 119.87779 * 179.70737 * 27 12 11 43 43 H 1.07998 * 120.12464 * 180.27581 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7021 1.3465 -0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8834 2.3965 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2863 9 6 1.3521 -2.4068 -0.3765 10 6 1.8259 -3.6499 0.0821 11 6 1.1801 -4.8065 -0.2906 12 6 0.0670 -4.7502 -1.1151 13 6 -0.6314 -6.0237 -1.5167 14 7 -1.6745 -6.3384 -0.5375 15 6 -2.4339 -7.4410 -0.6925 16 8 -2.2533 -8.1730 -1.6425 17 6 -3.5065 -7.7650 0.3152 18 6 -4.2042 -9.0393 -0.0858 19 6 -5.3181 -8.9879 -0.9032 20 6 -5.9576 -10.1544 -1.2790 21 6 -5.4909 -11.3778 -0.8261 22 6 -4.3723 -11.4291 0.0019 23 6 -3.7323 -10.2564 0.3689 24 8 -4.1158 -12.7343 0.3082 25 6 -5.3263 -13.4479 -0.0057 26 8 -5.9349 -12.6508 -1.0391 27 6 -0.4053 -3.5314 -1.5775 28 6 0.2212 -2.3616 -1.2125 29 1 -0.4851 0.8400 0.0004 30 1 2.6932 -3.6961 0.7241 31 1 1.5421 -5.7617 0.0598 32 1 -1.0832 -5.8957 -2.5004 33 1 0.0915 -6.8388 -1.5522 34 1 -1.8187 -5.7531 0.2226 35 1 -3.0544 -7.8928 1.2987 36 1 -4.2296 -6.9502 0.3508 37 1 -5.6866 -8.0347 -1.2526 38 1 -6.8249 -10.1117 -1.9211 39 1 -2.8649 -10.2932 1.0112 40 1 -5.9756 -13.5035 0.8681 41 1 -5.0968 -14.4465 -0.3776 42 1 -1.2704 -3.4996 -2.2232 43 1 -0.1510 -1.4130 -1.5703 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361418438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:01 Heat of formation + Delta-G solvation = -78.590300 kcal Electronic energy + Delta-G solvation = -26912.340998 eV Core-core repulsion = 22887.039450 eV Total energy + Delta-G solvation = -4025.301548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.13106 -40.84875 -39.51526 -38.74864 -37.29478 -36.26193 -35.01889 -33.35066 -32.01128 -31.41667 -31.15359 -29.23411 -27.92593 -26.52497 -25.25677 -23.98493 -23.22708 -22.87754 -21.79579 -21.32133 -19.22826 -18.92057 -18.64987 -18.36695 -18.03761 -17.33515 -17.15738 -16.68051 -16.38549 -15.84273 -15.55102 -15.46983 -15.45746 -15.11091 -14.86324 -14.63420 -14.49790 -14.17456 -14.00448 -13.81417 -13.66981 -13.64246 -13.44701 -13.08048 -12.85510 -12.74074 -12.69639 -12.45721 -12.08965 -12.05578 -11.78154 -11.49640 -11.28018 -11.07630 -10.85650 -9.96007 -9.84139 -9.37956 -9.26852 -9.02582 -8.66093 -6.35476 0.08296 0.23122 0.86624 1.15221 1.39828 1.47570 1.54171 1.74716 1.79241 2.20519 2.29940 2.52698 2.63803 2.88037 3.48534 3.67281 3.75120 3.80087 4.01432 4.04787 4.09128 4.23089 4.27021 4.30625 4.33885 4.46998 4.53976 4.64162 4.68424 4.69488 4.85262 5.02882 5.06376 5.07343 5.15991 5.22626 5.37051 5.40732 5.44585 5.51392 5.56232 5.70057 5.93153 6.10181 6.12086 6.22066 6.37692 6.69465 6.71786 6.93242 7.02043 7.36235 8.30501 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.034817 B = 0.001693 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.012418 B =16533.474110 C =16839.281479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.497 4.497 8 H 0.075 0.925 9 C 0.084 3.916 10 C -0.244 4.244 11 C -0.069 4.069 12 C -0.225 4.225 13 C 0.193 3.807 14 N -0.714 5.714 15 C 0.509 3.491 16 O -0.586 6.586 17 C -0.093 4.093 18 C -0.059 4.059 19 C -0.096 4.096 20 C -0.103 4.103 21 C 0.010 3.990 22 C 0.011 3.989 23 C -0.099 4.099 24 O -0.329 6.329 25 C 0.204 3.796 26 O -0.326 6.326 27 C -0.082 4.082 28 C -0.191 4.191 29 H 0.289 0.711 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.411 0.589 35 H 0.131 0.869 36 H 0.139 0.861 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.140 0.860 40 H 0.106 0.894 41 H 0.158 0.842 42 H 0.106 0.894 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.260 -16.284 3.159 21.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.526 4.526 8 H 0.093 0.907 9 C 0.082 3.918 10 C -0.263 4.263 11 C -0.088 4.088 12 C -0.227 4.227 13 C 0.070 3.930 14 N -0.365 5.365 15 C 0.296 3.704 16 O -0.467 6.467 17 C -0.132 4.132 18 C -0.060 4.060 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.034 4.034 22 C -0.033 4.033 23 C -0.117 4.117 24 O -0.246 6.246 25 C 0.094 3.906 26 O -0.243 6.243 27 C -0.101 4.101 28 C -0.211 4.211 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.133 0.867 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.247 0.753 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.178 0.822 38 H 0.172 0.828 39 H 0.157 0.843 40 H 0.124 0.876 41 H 0.176 0.824 42 H 0.124 0.876 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.282 -16.872 2.424 21.609 hybrid contribution 0.497 0.769 0.311 0.967 sum -12.786 -16.103 2.735 20.743 Atomic orbital electron populations 1.69853 1.08867 1.30615 1.35003 1.26714 0.95504 1.04388 0.91235 0.85200 0.79443 0.76389 0.78969 1.18355 1.18966 1.18972 1.19902 0.98380 0.92609 1.41697 0.90719 1.18013 0.91764 0.93071 0.88963 1.21158 1.04500 0.93058 1.07588 1.20680 0.94838 0.96871 0.96370 1.19212 1.01295 0.93271 1.08896 1.19700 0.88647 0.93456 0.91163 1.46324 1.35406 1.26023 1.28757 1.21122 0.82550 0.80053 0.86632 1.90706 1.71073 1.50594 1.34302 1.20713 0.96806 0.96444 0.99206 1.19224 0.95730 0.93258 0.97754 1.21131 0.94967 0.98678 0.96656 1.20344 1.02033 0.87545 1.02252 1.20084 0.96140 0.86774 1.00437 1.19933 0.97150 0.85621 1.00646 1.20100 1.01046 0.88217 1.02377 1.87317 1.37680 1.15958 1.83643 1.26110 0.80065 0.94556 0.89890 1.87309 1.68991 1.15997 1.51990 1.20762 0.98314 0.92282 0.98702 1.21265 1.00342 0.97125 1.02353 0.90005 0.88516 0.86705 0.92675 0.92482 0.75292 0.85148 0.84358 0.82240 0.82784 0.84261 0.87608 0.82445 0.87608 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.79 10.95 21.82 0.24 -40.55 16 2 C 0.04 1.81 5.14 85.26 0.44 2.25 16 3 Si 0.98 36.79 29.60 68.60 2.03 38.82 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.50 -25.88 9.05 23.46 0.21 -25.67 16 8 H 0.07 3.79 7.91 -2.91 -0.02 3.76 16 9 C 0.08 4.36 5.57 -21.29 -0.12 4.24 16 10 C -0.24 -11.30 9.80 22.73 0.22 -11.07 16 11 C -0.07 -2.77 9.67 22.22 0.21 -2.56 16 12 C -0.23 -8.66 5.27 -19.67 -0.10 -8.76 16 13 C 0.19 6.34 5.79 85.63 0.50 6.83 16 14 N -0.71 -19.24 5.55 -466.80 -2.59 -21.83 16 15 C 0.51 13.40 7.82 87.66 0.69 14.08 16 16 O -0.59 -20.73 16.03 -3.06 -0.05 -20.78 16 17 C -0.09 -1.55 5.83 29.10 0.17 -1.38 16 18 C -0.06 -1.21 4.37 -19.86 -0.09 -1.30 16 19 C -0.10 -1.82 9.69 22.27 0.22 -1.60 16 20 C -0.10 -2.06 10.06 22.34 0.22 -1.83 16 21 C 0.01 0.23 7.15 22.59 0.16 0.39 16 22 C 0.01 0.26 7.15 22.59 0.16 0.42 16 23 C -0.10 -2.26 9.71 22.34 0.22 -2.04 16 24 O -0.33 -7.57 11.40 -76.02 -0.87 -8.44 16 25 C 0.20 3.09 8.89 113.37 1.01 4.10 16 26 O -0.33 -7.08 11.40 -76.01 -0.87 -7.94 16 27 C -0.08 -3.49 9.67 22.22 0.21 -3.27 16 28 C -0.19 -9.52 8.70 22.73 0.20 -9.33 16 29 H 0.29 12.96 8.30 -92.71 -0.77 12.19 16 30 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 31 H 0.11 3.98 8.06 -2.91 -0.02 3.96 16 32 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 33 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16 34 H 0.41 9.77 8.46 -92.70 -0.78 8.99 16 35 H 0.13 1.57 8.08 -2.39 -0.02 1.55 16 36 H 0.14 1.51 8.08 -2.39 -0.02 1.50 16 37 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.16 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.11 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.10 5.30 6.16 -2.91 -0.02 5.28 16 Total: -1.00 -67.72 373.37 2.70 -65.02 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 0.27 Total: 32.22 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: 4.53 Total: -36.50 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -2.35 Total: -62.39 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.78 Total: -37.17 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Total: -67.72 2.70 -65.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361418438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.569 kcal (2) G-P(sol) polarization free energy of solvation -67.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds